Intrahelical side chain interactions in α-helices: Poor correlation between energetics and frequency

FEBS Letters

Volumn 429, Issue 1, 1998, Pages 99-103

  Fernandez Recio J ^a   Sancho, J ^a  

^a UNIVERSITY OF ZARAGOZA   (Spain)

Author keywords

Helix design; Helix stability; Protein design; Protein folding; Protein stability; Side chain interaction

Indexed keywords

ALPHA HELIX; ARTICLE; ENERGY TRANSFER; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STABILITY;

DATA INTERPRETATION, STATISTICAL; LINEAR MODELS; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; STATISTICS;

EID: 0032486233     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(98)00569-9     Document Type: Article

References (36)

1. Davies D.R. J. Mol. Biol. 9:1964;605-612.
2. Prothero J.W. Biophys. J. 6:1966;367-370.
3. Chou P.Y., Fasman G.D. Biochemistry. 13:1974;211-222.
4. Chakrabartty A., Baldwin R.L. Adv. Protein Chem. 46:1995;141-176.
5. Huyghues-Despointes B.M.P., Klingler T.M., Baldwin R.L. Biochemistry. 34:1995;13267-13271.
6. Stapley B.J., Rohl C.A., Doig A.J. Protein Sci. 4:1995;2383-2391.
7. Stapley B.J., Doig A. J. Mol. Biol. 272:1997;465-473.
8. Padmanabhan S., Baldwin R.L. J. Mol. Biol. 241:1994;706-713.
9. Viguera A.R., Serrano L. Biochemistry. 34:1995;8771-8779.
10. Fernández-Recio J., Vázquez A., Civera C., Sevilla P., Sancho J. J. Mol. Biol. 267:1997;184-197.
11. Huyghues-Despointes B.M.P., Baldwin R.L. Biochemistry. 36:1997;1965-1970.
12. Hobohm U., Sander C. Protein Sci. 3:1994;522-524.
13. Vriend G. J. Mol. Graphics. 8:1990;52-56.
14. Kabsch W., Sander C. Biopolymers. 22:1983;2577-2637.
15. Vriend G., Sander C., Stouten P.F.W. Protein Eng. 7:1994;23-29.
16. Klingler T.M., Brutlag D.L. Protein Sci. 3:1994;1847-1857.
17. Muñoz V., Serrano L. Nature Struct. Biol. 1:1994;399-409.
18. Stellwagen E., Park S.-H., Shalongo W., Jain A. Biopolymers. 32:1992;1193-1200.
19. Lyu P.C., Gans P.J., Kallenbach N.R. J. Mol. Biol. 223:1992;343-350.
20. Scholtz J.M., Qian H., Robbins V.H., Baldwin R.L. Biochemistry. 32:1993;9668-9676.
21. Shallongo W., Stellwagen E. Protein Sci. 4:1995;1161-1166.
22. Smith J.S., Scholtz J.M. Biochemistry. 37:1998;33-40.
23. Shoemaker K.R., Fairman R., Schultz D.A., Robertson A.D., York E.J., Stewart J.M., Baldwin R.L. Biopolymers. 29:1990;1-11.
24. Lyu P.C., Liff M.I., Marky L.A., Kallenbach N.R. Science. 250:1990;669-673.
25. O'Neil K.T., DeGrado W.F. Science. 250:1990;646-651.
26. Wojcik J., Altmann K.-H., Scheraga H.A. Biopolymers. 30:1990;121-134.
27. Horovitz A., Matthews J.M., Fersht A.R. J. Mol. Biol. 227:1992;560-568.
28. Chakrabartty A., Kortemme T., Baldwin R.L. Protein Sci. 3:1994;843-852.
29. Blaber M., Zhang X.-J., Lindstrom J.D., Pepiot S.D., Baase W.A., Matthews B.W. J. Mol. Biol. 235:1994;600-624.
30. Walther D., Argos P. Protein Eng. 9:1996;471-478.
31. Minor D.L. Jr., Kim P.S. Nature. 380:1996;730-734.
32. Sturtevant J. COSB. 4:1994;69-78.
33. Viguera A.R., Villegas V., Avilés F.X., Serrano L. Fold. Des. 2:1996;23-33.
34. Abkevich V.I., Gutin A.M., Shakhnovich E.I. J. Mol. Biol. 252:1995;460-471.
35. Govindarajan S., Goldstein R.A. Proteins. 22:1995;413-418.
36. Muñoz V., Serrano L. Fold. Des. 1:1996;R71-R77.