A molecular model for the d chain of the giant haemoglobin from Lumbricus terrestris and its implications for subunit assembly

Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology

Volumn 1383, Issue 1, 1998, Pages 130-142

  Viana, Ednilson ^a   Da Silva, Carlos Henrique T P ^a   Tabak, Marcel ^a   Imasato, Hidetake ^a   Garratt, Richard ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

d Chain; Hemoglobin; Lumbricus terrestris; Molecular model; Oligomeric structure; Subunit contact

Indexed keywords

HEMOGLOBIN; TRYPTOPHAN;

ANNELID WORM; ARTICLE; BIOLOGICAL MODEL; CRYSTAL STRUCTURE; FLUORESCENCE; MICROTUBULE ASSEMBLY; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; HEMOGLOBINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OLIGOCHAETA; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

ANNELIDA; BIVALVIA; LUMBRICUS TERRESTRIS;

EID: 0032478245     PISSN: 01674838     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4838(97)00194-5     Document Type: Article

References (50)

1. Shishikura F., Snow J.W., Gotoh T., Vinogradov S.N., Walz D.A. J. Biol. Chem. 262:1987;3123-3131.
2. Fushitani K., Matsuura M.S.A., Riggs A.F. J. Biol. Chem. 263:1988;6502-6517.
3. Fushitani K., Riggs A.F. Proc. Natl. Acad. Sci. USA. 85:1988;9461-9463.
4. Vinogradov S.N., Lugo S.D., Mainwaring M.G., Kapp O.H., Crewe A.V. Proc. Natl. Acad. Sci. USA. 83:1986;8034-8038.
5. Ownby D.W., Zhu H., Schneider K., Beavis R.C., Chait B.T., Riggs A.F. J. Biol. Chem. 268:1993;13539-13547.
6. Suzuki T., Takagi T., Gotoh T. J. Biol. Chem. 265:1990;12168-12177.
7. Fushitani K., Riggs A.F. J. Biol. Chem. 266:1991;10275-10281.
8. Vinogradov S.N., Sharma P.K., Qabar A.N., Wall J.S., Westrick J.A., Simmons J.H., Gill S.J. J. Biol. Chem. 266:1991;13091-13096.
9. Zhu H., Ownby D.W., Riggs C.K., Nolasco N.J., Stoops J.K., Riggs A.F. J. Biol. Chem. 271:1996;30007-30021.
10. Schatz M., Orlova E.V., Dube P., Jager J., Van Heel M. J. Struct. Biol. 114:1995;28-40.
11. de Haas F., Boisset N., Taveau J.C., Lambert O., Vinogradov S.N., Lamy J.N. Biophys. J. 70:1996;1973-1984.
12. de Haas F., Taveau J.C., Boisset N., Lambert O., Vinogradov S.N., Lamy J.N. J. Mol. Biol. 255:1996;140-153.
13. Martin P.D., Kuchumov A.R., Green B.N., Oliver R.W.A., Braswell E.H., Wall J.S., Vinogradov S.N. J. Mol. Biol. 255:1996;154-169.
14. Strand K., Royer W.E. Jr. Biophys. J. 70:1996;A435.
15. Martin P.D., Eisele K.L., Doyle M.A., Kuchumov A.R., Walz D.A., Arutyunyan E.G., Vinogradov S.N., Edwards B.F.P. J. Mol. Biol. 255:1996;170-175.
16. Perussi J.R., Imasato H., Tabak M., Meirelles N.C. Physiol. Chem. Phys. Med. NMR. 22:1990;159-168.
17. Imasato H., Tinto M.H., Perussi J.R., Tabak M. Comp. Biochem. Physiol. 112B:1995;217-226.
18. S.C.M. Agustinho, M.H. Tinto, J.R. Perussi, M. Tabak, H. Imasato, Comp. Biochem. Physiol. (1997) in press.
19. Agustinho S.C.M., Tinto M.H., Imasato H., Tominaga T.T., Perussi J.R., Tabak M. Biochim. Biophys. Acta. 1298:1996;148-158.
20. Ascoli F., RossiFanelli M.R., Chiancone E., Vecchini P., Antonini E. J. Mol. Biol. 119:1978;191.
21. Fushitani K., Higashiyama K., Asao M., Hasakawa K. Biochim. Biophys. Acta. 1292:1996;273-280.
22. Xie Q., Donahue R.A. Jr., Schneider K., Mirza U.A., Haller I., Chait B.T., Riggs A. Biochim. Biophys. Acta. 1337:1997;241-247.
23. Bernstein F.C., Koetzle T.F., Williams G.J.B., Meyer E.F. Jr., Brice M.D., Ridgers J.R., Kennard O., Shimanouchi T., Tasumi M. J. Mol. Biol. 112:1977;535-542.
24. Lesk A.M., Chothia C. J. Mol. Biol. 136:1980;225-270.
25. Bashford D., Chothia C., Lesk A.M. J. Mol. Biol. 196:1987;199-216.
26. Aronson H.-E., Royer W.E., Hendrickson W.A. Protein Sci. 3:1994;1706-1711.
27. Gerstein M., Altman R.B. CABIOS. 11:1995;633-644.
28. Kapp O.H., Moens L., Vanfleteren J., Trotman C.N.A., Suzuki T., Vinogradov S.N. Protein Sci. 4:1995;2179-2190.
29. Jones T.A., Zon J.-Y., Cowan S.W., Kjelgaard M. Acta Cryst. A47:1991;110-119.
30. Barton G., Sternberg M.J.E. J. Mol. Biol. 198:1987;327-337.
31. Kolatkar P.R., Meador W.E., Stanfield R.L., Hackert M.L. J. Biol. Chem. 263:1988;3462-3465.
32. Jones T.A., Thirup S. EMBO J. 5:1986;819-822.
33. Cambillau C.C., Horjales E. J. Mol. Graph. 5:1987;174-177.
34. Vriend G., Sander C., Stouten P.F.W. Protein Eng. 7:1994;23-29.
35. R.E. Dickerson, I. Geis, in: Hemoglobin: Structure, Function, Evolution and Pathology, Benjamin Cummings, Menlo Park, 1983, pp. 66-116.
36. J.S. Richardson, D.C. Richardson, Principles and patterns of protein conformation, in: G.D. Fasman (Ed.), Prediction of Protein Structure and the Principles of Protein Conformation, Plenum, New York, 1989, pp. 1-98.
37. Weiner S.J., Kollman P.A., Case D.A., Singh U.D., Ghio D., Alagona G., Profeta S. Jr., Weiner P. J. Am. Chem. Soc. 106:1984;765-784.
38. Laskowski R.A., MacArthur M.W., Thornton J.M. J. Appl. Cryst. 26:1993;283-291.
39. Lüthy R., Bowie J.U., Eisenberg D. Nature. 356:1992;83-85.
40. Vriend G., Sander C. J. Appl. Cryst. 26:1993;47-60.
41. Vriend G. J. Mol. Graph. 8:1990;52-56.
42. Sippl M.J. Proteins Struct. Funct. Genet. 17:1993;355-362.
43. Thornton J.M. J. Mol. Biol. 151:1981;261-287.
44. Gotoh T., Shishikura F., Snow J.W., Ereifej K.I., Vinogradov S.N., Walz D.A. Biochem. J. 241:1987;441-445.
45. MacGregor M.J., Islam S.A., Sternberg M.J.E. J. Mol. Biol. 198:1987;295-310.
46. Sander C., Schneider R. Proteins Struct. Funct. Genet. 9:1991;56-68.
47. Hirsh R.E., Vidugiris G.J.A., Friedman J.M., Harrington J.P. Biochim. Biophys. Acta. 1205:1994;248-251.
48. Willis K.J., Szabo A.G., Zuker M., Ridgeway J.M., Alpert B. Biochemistry. 29:1990;5270-5275.
49. Royer W.E. Jr. J. Mol. Biol. 235:1994;657-681.
50. Royer W.E. Jr., Love W.E., Fenderson F.F. Nature. 316:1985;277-280.