Temperature dependence of self-entanglements in protein backones near the glass-like transition

Canadian Journal of Chemistry

Volumn 76, Issue 10, 1998, Pages 1402-1409

  Arteca, Gustavo A ^a   Caughill, Denise I ^a  

^a LAURENTIAN UNIVERSITY   (Canada)

Author keywords

Anharmonic vibrations; Flexible molecular chains; Glass phase transition; Isotropic temperature factors; Molecular shape fluctuations

Indexed keywords

PROTEIN;

ARTICLE; CALCULATION; CATALYSIS; CHEMICAL BOND; CONFORMATIONAL TRANSITION; HYDRATION; MOLECULAR INTERACTION; MOLECULAR SIZE; PHASE TRANSITION; POLYMERIZATION; PROTEIN CONFORMATION; STRUCTURE ACTIVITY RELATION; TEMPERATURE DEPENDENCE;

EID: 0032463317     PISSN: 00084042     EISSN: None     Source Type: Journal    
DOI: 10.1139/v98-179     Document Type: Article

References (58)

1. 1. F.R.N. Gurd and T.M. Rothgeb. Adv. Prot. Chem. 33, 73 (1979).
2. 2. M. Karplus and J.A. McCammon. Annu. Rev. Biochem. 53, 263 (1983).
3. 3. D. Ringe and G.A. Petsko. Prog. Biophys. Mol. Biol. 45, 197 (1985).
4. 4. J.A. McCammon and S.C. Harvey. Dynamics of proteins and nucleic acids. Cambridge University Press, Cambridge. 1987.
5. 5. M. Diehl, W. Doster, W. Petry, and H. Schober. Biophys. J. 73, 2726 (1997).
6. 6. M. Gerstein, A.M. Lesk, and C. Chothia. Biochemistry, 33, 6739 (1994).
7. 7. A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia. J. Mol. Biol. 247, 536 (1995).
8. 8. W.A. Gilbert, J. Kuriyan, G.A. Petsko, and D. Ringe Ponzi. In Structure and dynamics: nucleic acids and proteins. Edited by E. Clementi and R.H. Sharma. Adenine Press, New York. 1983.
9. 9. H. Frauenfelder, H. Hartmann, M. Karplus, I.D. Kuntz, J. Kuriyan, F. Parak, G.A. Petsko, D. Ringe, R.F. Tilton, M. Connolly, and N. Max. Biochemistry, 26, 254 (1987).
10. 10. K. Kuczera, J. Kuriyan, and M. Karplus. J. Mol. Biol. 213, 351 (1990).
11. 11. B.F. Rasmussen, A.M. Stock, D. Ringe, and G.A. Petsko. Nature (London), 357, 423 (1992).
12. 12. W. Doster, S. Cusack, and W. Petry. Nature (London), 337, 754 (1992).
13. 13. R.F. Tilton, J.C. Dewan, and G.A. Petsko. Biochemistry, 31, 2469 (1992).
14. 14. I.V. Kurinov and R.W. Harrison. Acta Crystallogr. Sect. D: Biol. Crystallogr. 51, 98 (1995).
15. 15. F. Parak, E.W. Knapp, and D. Kucheida. J. Mol. Biol. 161, 177 (1982).
16. 16. E.R. Bauminger, S.G. Cohen, I. Nowik, S. Ofer, and J. Yariv. Proc. Nat. Acad. Sci. U.S.A. 80, 736 (1983).
17. 17. S. Cusack and W. Doster. Biophys. J. 58, 243 (1990).
18. 18. M.-C. Bellisent-Funel, J.-M. Zanotti, and S.H. Chen. Faraday Discuss. 103, 281 (1996).
19. 19. D. Tobias. Bull. Am. Phys. Soc. 43, 516 (1998).
20. 20. R.J. Loncharich and B.R. Brooks. J. Mol. Biol. 215, 439 (1990).
21. 21. J.E. Wampler. J. Chem. Inf. Comput. Sci. 37, 1171 (1997).
22. 22. G.A. Arteca and P.G. Mezey. Biopolymers, 32, 1609 (1992).
23. 23. E.J. Janse van Rensburg, D.W. Sumners, E. Wasserman, and S.G. Whittington. J. Phys. A: Math Gen. 25, 6557 (1992).
24. 24. G.A. Arteca. Biopolymers, 33, 1829 (1993).
25. 25. G.A. Arteca. Phys. Rev. E: Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top. 49, 2417 (1994).
26. 26. E. Orlandini, M.C. Tesi, S.G. Whittington, D.W. Sumners, and E.J. Janse van Rensburg. J. Phys. A: Math Gen. 27, L333 (1994).
27. 27. A.L. Kholodenko and D.P. Rolfsen. J. Phys. A: Math Gen. 29, 5677 (1996).
28. 28. A.L. Kholodenko and T.A. Vilgis. Phys. Rep. 298, 251 (1998).
29. 29. G.A. Arteca. Phys. Rev. E: Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top. 51, 2600 (1995); 54, 3044 (1996); 56, 4516 (1997).
30. 29. G.A. Arteca. Phys. Rev. E: Stat. Phys. Plasmas Fluids Relat.Interdiscip. Top. 51, 2600 (1995); 54, 3044 (1996); 56, 4516 (1997).
31. 29. G.A. Arteca. Phys. Rev. E: Stat. Phys. Plasmas Fluids Relat.Interdiscip. Top. 51, 2600 (1995); 54, 3044 (1996); 56, 4516 (1997).
32. 30. G.A. Arteca. Can. J. Chem. 73, 241 (1995).
33. 31. G.A. Arteca. Macromolecules, 29, 7594 (1996).
34. 32. G.A. Arteca. J. Phys. Chem. B, 101, 4097 (1997).
35. 33. G.A. Arteca. Biopolymers, 35, 393 (1995).
36. 34. G.A. Arteca. Int. J. Quantum Chem. Quantum Chem. Symp. 28, 433 (1994).
37. 35. G.A. Arteca. J. Comp. Chem. 15, 633 (1994).
38. 36. A. Stasiak, V. Katritch, J. Bednar, D. Michoud, and J. Dubochet. Nature (London), 384, 122 (1996).
39. 37. V. Katritch, J. Bednar, D. Michoud, R.G. Scharein, J. Dubochet, and A. Stasiak. Nature (London), 384, 142 (1996).
40. 38. A.Yu. Grosberg, A. Feigel, and Y. Rabin. Phys. Rev. E: Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top. 54, 6618 (1996).
41. 39. E.J. Janse van Rensburg, E. Orlandini, D.W. Sumners, M.C. Tesi, and S.G. Whittington. J. Knot Theory Ram. 6, 31 (1997).
42. 40. C.F. Gauss. König. Ges. Wiss. Göttingen, 5, 602 (1877).
43. 41. G. Câlugâreanu. Rev. Math. Pure Appl. 4, 5 (1959).
44. 42. F.B. Fuller. Proc. Symp. Appl. Math. 14, 64 (1962).
45. 43. S.F. Edwards. Proc. R. Soc. (London), 91, 513 (1967); J. Phys.A: Math Gen. 1, 15 (1968).
46. 43. S.F. Edwards. Proc. R. Soc. (London), 91, 513 (1967); J. Phys. A: Math Gen. 1, 15 (1968).
47. 44. M.G. Brereton and S. Shah. J. Phys. A: Math Gen. 14, L51 (1981).
48. 45. F.W. Wiegel. In Phase transitions and critical phenomena. Vol. 7. Edited by C. Domb and J.L. Lebowitz. Academic Press, London. 1983.
49. 46. M. Doi and S.F. Edwards. The theory of polymer dynamics. Clarendon Press, Oxford. 1988.
50. 47. M.G. Brereton. J. Mol. Struct. (Theochem), 336, 191 (1995).
51. 48. H. Kleinert. Path integrals in quantum mechanics, statistics, and polymer physics. World Scientific, Singapore. 1995.
52. 49. B. O'Neill. Elementary differential geometry. Academic Press, Boston. 1966. p. 290.
53. 50. V.I. Arnol'd. Sel. Math. Sov. 5, 327 (1986).
54. 51. M.E. Freedman and Z.-X. He. Ann. Math. 134, 189 (1991).
55. 52. S. Brynson, M.E. Freedman, Z.-X. He, and Z. Wang. Bull. Am. Math. Soc. (NS), 28, 99 (1993).
56. 53. M.H. Freedman, Z.-X. He, and Z. Wang. Ann. Math. 139, 1 (1994).
57. 54. V.G. Ozol'-Kalnin. Pis'ma. Zh. Eksp. Teor. Fiz. 59, 535 (1994). (JETP Lett. 59, 565 (1994).)
58. 55. I.S. Gradshtein and I.M. Ryzhik. Tablitsy integralov, summ, riadov i proizvedenii. FM Publishers, Moscow. 1962.