Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli

Journal of Bacteriology

Volumn 180, Issue 24, 1998, Pages 6625-6634

  Benoit, Stéphane ^a   Abaibou, Hafid ^a,b   Mandrand Berthelot, Marie Andrée ^a  

^a UNIVERSITÉ DE LYON   (France)

^b LOMA LINDA UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; ANTIBIOTIC AGENT; BACTERIAL ENZYME; BETA LACTAMASE; CYTOCHROME B; FORMATE DEHYDROGENASE; HYBRID PROTEIN; PLASMID DNA;

AEROBIC METABOLISM; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL METABOLISM; CYTOPLASM; ENZYME ACTIVITY; ESCHERICHIA COLI; MEMBRANE BINDING; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE PHOSPHORYLATION; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0032436623     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.24.6625-6634.1998     Document Type: Article

References (50)

1. Abaibou, H., J. Pommier, S. Benoit, G. Giordano, and M. A. Mandrand-Berthelot. 1995. Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase. J. Bacteriol. 177:7141-7149.
2. Augier, V. B., M. Guigliarelli, P. Asso, C. Bertrand, G. Frixon, G. Giordano, M. Chippaux, and F. Blasco. 1993. Site-directed mutagenesis of conserved cysteine residues within the β subunit of Escherichia coli nitrate reductase. Physiological, biochemical, and EPR characterization of the mutated enzymes. Biochemistry 32:2013-2023.
3. Ballantine, S. P., and D. H. Boxer. 1986. Isolation and characterisation of a soluble active fragment of hydrogenase isoenzyme 2 from the membranes of anaerobically grown Escherichia coli. Eur. J. Biochem. 156:277-284.
4. Bartolomé, B., Y. Jubele, E. Martinez, and F. de la Cruz. 1991. Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives. Gene 102:75-78.
5. Begg, Y. A., J. N. Whyte, and B. A. Haddock. 1977. The identification of mutants of Escherichia coli deficient in formate dehydrogenase and nitrate reductase activities using dye indicators plates. FEMS Microbiol. Lett. 2:47-50.
6. Berg, B. L., J. Li, J. Heider, and V. Stewart. 1991. Nitrate-inducible formate dehydrogenase in E. coli K-12. I. Nucleotide sequence of the fdnGHI operon and evidence that opal (UGA) encodes selenocysteine. J. Biol. Chem. 266: 22380-22385.
7. Berks, B. C. 1996. A common export pathway for proteins binding complex redox cofactors? Mol. Microbiol. 22:393-404.
8. Berks, B. C., M. D. Page, D. J. Richardson, A. Reilly, A. Cavill, F. Outen, and S. J. Ferguson. 1995. Sequence analysis of subunits of the membrane-bound nitrate reductase from a denitrifying bacterium: the integral membrane subunit provides a prototype for the dihaem electron-carrying arm of a redox loop. Mol. Microbiol. 15:319-331.
9. Bolivar, F., R. L. Rodriguez, P. J. Greene, M. C. Betlach, H. L. Heynecker, H. W. Boyer, J. H. Crosa, and S. Falkow. 1977. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene 2:95-113.
10. Boonstra, J., and W. N. Konings. 1977. Generation of an electrochemical proton gradient by nitrate respiration in membrane vesicles from anaerobically grown Escherichia coli. Eur. J. Biochem. 78:361-368.
11. 4 cluster. Science 275:1305-1307.
12. Broome-Smith, J. K., M. Tadayyon, and Y. Zhang. 1990. β-Lactamase as a probe of membrane protein assembly and protein export. Mol. Microbiol. 4:1637-1644.
13. Enoch, H. G., and R. L. Lester. 1975. The purification and properties of formate dehydrogenase and nitrate reductase from Escherichia coli. J. Biol. Chem. 250:6693-6705.
14. Froshauer, S., G. N. Green, D. Boyd, K. McGovern, and J. Beckwith. 1988. Genetic analysis of the membrane insertion and topology of MalF, a cytoplasmic membrane protein of Escherichia coli. J. Mol. Biol. 200:501-511.
15. Gennis, R. B., and V. Stewart. 1996. Respiration, p. 217-261. In F. C. Neidhardt, R. Curtis III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. American Society for Microbiology, Washington, D.C.
16. Giordano, R., C. L. Medani, M. A. Mandrand-Berthelot, and D. H. Boxer. 1983. Formate dehydrogenases from E. coli. FEMS Microbiol. Lett. 17:171-177.
17. Gough, J. A., and N. E. Murray. 1983. Sequence diversity among related genes for recognition of specific targets in DNA molecules. J. Mol. Biol. 166:1-19.
18. Graham, A., and D. H. Boxer. 1981. The organization of formate dehydrogenase in the cytoplasmic membrane of Escherichia coli. Biochem. J. 195: 627-637.
19. Gunn, F. J., C. G. Tate, C. E. Sansom, and P. J. F. Henderson. 1995. Topological analyses of the L-fucose-H+ symport protein, FucP, from Escherichia coli. Mol. Microbiol. 15:771-783.
20. Ho, S. N., H. D. Hunt, R. M. Morton, S. K. Pullen, and L. R. Pease. 1989. Site directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
21. Iobbi-Nivol, C., C. L. Santini, F. Blasco, and G. Giordano. 1990. Purification and further characterization of the second nitrate reductase of Escherichia coli K-12. Eur. J. Biochem. 188:679-687.
22. Jones, R. W. 1980. Proton translocation by the membrane-bound formate dehydrogenase of Escherichia coli. FEBS Microbiol. Lett. 8:167-171.
23. Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
24. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680-685.
25. Lyons, L. B., and N. D. Zinder. 1972. The genetic map of the filamentous bacteriophage fl. Virology 49:45-60.
26. MacGregor, C. H. 1976. Biosynthesis of membrane-bound nitrate reductase in Escherichia coli: evidence for a soluble precursor. J. Bacteriol. 126:122-131.
27. Magalon, A., D. Lemesle-Meunier, R. A. Rothery, C. Frixon, J. H. Weiner, and F. Blasco. 1997. Heme axial ligation by the highly conserved His residues in helix II of cytochrome b (NarI) of Escherichia coli nitrate reductase A (NarGHI). J. Biol. Chem. 272:25652-25658.
28. Manoil, C., J. J. Mekalanos, and J. Beckwith. 1985. TnphoA: a transposon probe for protein export signals. Proc. Natl. Acad. Sci. USA 82:8129-8133.
29. Menon, N. K., J. Robbins, J. C. Wendt, K. T. Shanmugam, and A. E. Przybyla. 1991. Mutational analysis and characterization of the Escherichia coli hya operon, which encodes (NiFe) hydrogenase 1. J. Bacteriol. 173:4851-4861.
30. Miller, J. H. 1992. A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli and related bacteria, p. 275-278. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
31. Minton, N. P. 1984. Improved plasmid vectors for the isolation of translational lac gene fusions. Gene 31:269-273.
32. Mitchell, P. 1979. Compartmentation and communication in living systems. Ligand conduction: a general catalytic principle in chemical, osmotic and chemiosmotic reaction systems. Eur. J. Biochem. 95:1-20.
33. Nivière, V., S. L. Wong, and G. Voordouw. 1992. Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a β-lactamase fusion protein. J. Gen. Microbiol. 138:2173-2183.
34. Osborn, M. J., J. E. Gander, E. Parisi, and J. Carson. 1972. Mechanism of assembly of the outer membrane of Salmonella typhimurium. J. Biol. Chem. 247:3962-3972.
35. Plunkett, G., V. Burland, D. L. Daiels, and F. R. Blattner. 1993. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res. 21:3391-3398.
36. Pommier, J., M. A. Mandrand-Berthelot, S. E. Holt, D. H. Boxer, and G. Giordano. 1992. A second phenazine methosulphate-linked formate dehydrogenase isoenzyme in Escherichia coli. Biochim. Biophys. Acta 1107:305-313.
37. Rodrigue, A., D. H. Boxer, M. A. Mandrand-Berthelot, and L. F. Wu. 1996. Requirement for nickel of the transmembrane translocation of NiFe-hydrogenase 2 in Escherichia coli. FEBS Lett. 392:81-86.
38. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
39. Silhavy, T. J., and J. R. Beckwith. 1985. Use of lac fusions for the study of biological problems. Microbiol. Rev. 49:398-418.
40. Suppmann, B., and G. Sawers. 1994. Isolation and characterization of hypophosphite-resistant mutants of E. coli: identification of the FocA protein, encoded by the pfl operon, as a putative formate transporter. Mol. Microbiol. 11:965-982.
41. Tabor, S., and C. C. Richardson. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. USA 76:4350-4354.
42. Tate, C. G., and P. J. F. Henderson. 1993. Membrane topology of the L-rhamnose-H+ transport protein (RhaT) from Enterobacteria. J. Biol. Chem. 268:26850-26857.
43. van Dongen, W., W. Hagen, W. van den Berg, and C. Veeger. 1988. Evidence for an unusual mechanism of membrane translocation of the periplasmic hydrogenase of Desulfovibrio vulgaris (Hildenborough), as derived from expression in Escherichia coli. FEMS Microbiol. Lett. 50:5-9.
44. von Heijne, G. 1986. The distribution of positively charged residues in bacterial inner membrane correlates with the trans-membrane topology. EMBO J. 5:3021-3027.
45. Weiner, J. H. Personal communication.
46. Weiner, J. H., P. T. Bilous, G. M. Shaw, S. P. Lubitz, L. Frost, G. H. Thomas, J. A. Cole, and R. J. Turner. 1998. A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins. Cell 93: 93-101.
47. Weiner, J. H., G. Shaw, R. J. Turner, and C. A. Trieber. 1993. The topology of the anchor subunit of dimethyl sulfoxide reductase of Escherichia coli. J. Biol. Chem. 268:3238-3244.
48. Wu, L. F., and M. A. Mandrand-Berthelot. 1986. Genetic and physiological characterization of new Escherichia coli mutants impaired in hydrogenase activity. Biochimie 68:167-179.
49. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
50. Zhang, Y., and J. K. Broome-Smith. 1990. Correct insertion of a simple plasma-membrane protein into the cytoplasmic membrane of Escherichia coli. Gene 96:51-57.