Genomic mapping of a calicivirus VPg

Archives of Virology

Volumn 143, Issue 12, 1998, Pages 2421-2430

  Dunham, D M ^a   Jiang, X ^a   Berke, T ^a   Smith, A W ^b   Matson, D O ^a  

^a CENTER FOR PEDIATRIC RESEARCH   (United States)

^b OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; CALICIVIRUS; GENE MAPPING; PICORNAVIRUS; VIRAL GENETICS; VIRUS DETECTION;

AMINO ACID SEQUENCE; ANIMALS; CALICIVIRIDAE; CELL LINE; CHROMOSOME MAPPING; GENES, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PRIMATES; RNA, VIRAL; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL CORE PROTEINS; VIRULENCE;

EID: 0032417796     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050471     Document Type: Article

References (33)

1. Alonso Martin JM, Casais R, Boga JA, Para F (1996) Processing of rabbit hemorrhagic disease virus polyprotein. J Virol 70: 1 261-1 265
2. Ambros V, Baltimore D (1978) Protein is linked to the 5′ end of poliovirus RNA by a phosphodiester linkage to tyrosine. J Biol Chem 253: 5 263-5 266
3. Berke T, Golding B, Jiang X, Cubbitt DW, Wolfaardt M, Smith AW, Matson DO (1997) Phylogenetic analysis of the caliciviruses. J Med Virol 52: 419-424
4. Boga JA, Marin MS, Casais R, Prieto M, Parra F (1992) In vitro translation of a subgenomic mRNA from purified virions of the Spanish isolate AST/89 of rabbit hemorrhagic disease virus (RHDV). Virus Res 26: 33-40
5. Burrough JN, Brown F (1978) Presence of a covalently linked protein on calicivirus RNA. J Gen Virol 41: 443-446
6. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package, 3.5c). Department of Genetics, University of Washington, Seattle
7. Flanegan JB, Pettersson RF, Ambros V, Hewlett MJ, Baltimore D (1977) Covalent linkage of a protein to a defined nucleotide sequence at the 5′ terminus of virion and replicative intermediate RNAs of poliovirus. Proc Natl Acad Sci USA 74: 961-965
8. Gorbalenya AE, Donchenko AP, Binor VM, Koonin EV (1989) Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine protease. A distinct protein super family with a common structural fold. Fed Eur Biochem Soc 243: 103-114
9. Herbert TP, Brierley I, Brown TDK (1997) Identification of a protein linked to the genomic and subgenomic mRNAs of feline calicivirus and its role in translation. J Gen Virol 78: 1 033-1 040
10. Jiang X, Graham DY, Wang K, Estes MK (1990) Norwalk virus genome cloning and characterization. Science 250: 1 580-1 583
11. Kaplan G, Lubinski J, Dasgupta A, Racaniello VR (1995) In vitro synthesis of infectious poliovirus RNA. Proc Natl Acad Sci USA 82: 8 424-8 428
12. Kitamura N, Semler BL, Rothberg PG, Larsen GR, Adler CJ, Dorner AJ, Emini EA, Hanecak R, Lee JJ, vander Werf S, Anderson CW, Wimmer E (1981) Primary structure, gene organization and polypeptide expression of poliovirus RNA. Nature 291: 547-553
13. Koonin EV, Gorbalenya AE, Purdy MA, Rozanov MN, Reyes GR, Bradley DW (1992) Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-stranded RNA plant and animal viruses. Proc Natl Acad Sci USA 89: 8 259-8 263
14. Liu BL, Clarke IN, Caul EO, Lambden PR (1995) Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses. Arch Virol 140: 1 345-1 356
15. Liu B, Clarke IN, Lambden PR (1996) Polyprotein processing in Southampton virus: Identification of 3C-like protease cleavage sites by in vitro mutagenesis. J Virol 70: 2 605-2 610
16. Meyers G, Wirblich C, Thiel H-J (1991a) Rabbit hemorrhagic disease virus-molecular cloning and nucleotide sequencing of a calicivirus genome. Virology 184: 664-676
17. Meyers G, Wirblich C, Thiel H-J (1991b) Genomic and subgenomic RNAs of rabbit hemorrhagic disease virus are both protein-linked and packaged into particles. Virology 184: 677-686
18. Neill JD (1990) Nucleotide sequence of a region of the feline calicivirus genome which encodes picornavirus-like RNA-dependent RNA polymerase, cysteine protease and 2C polypeptides. Virus Res 17: 145-160
19. Nomoto A, Kitamura N, Golini F, Wimmer E (1977) The 5′-terminal structures of poliovirion RNA and poliovirus mRNA differ only in the genome-linked protein VPg. Proc Natl Acad Sci USA 74: 5 345-5 349
20. Palmenberg AC (1990) Proteolytic processing of a picornaviral polyprotein. Annu Rev Microbiol 44: 603-623
21. Pettersson RF, Ambros V, Baltimore D (1978) Identification of a protein linked to nascent poliovirus RNA and to the polyuridylic acid of negative-strand RNA. J Virol 27: 357-365
22. pol. J Virol 69: 7 169-7 179
23. Racaniello VR, Baltimore D (1981) Cloned poliovirus cDNA is infectious in mammalian cells. Science 214: 916-919
24. Schaffer FL, Ehresmann DW, Fretz MK, Soergel ME (1979) A protein, VPg, covalently linked to 36S calicivirus RNA. J Gen Virol 47: 215-220
25. Smith AW, Skilling DE, Ensley PK, Benirschke K, Lester TL (1983) Calicivirus isolation and persistence in a pygmy chimpanzee (Pan paniscus). Science 221; 79-81
26. Smith AW, Skilling DE, Benirschke K (1985) Calicivirus isolation from three species of primates: an incidental finding. Am J Vet Res 46: 2 197-2 199
27. Sosnovtsev S, Green KY (1995) RNA transcripts derived from cloned full-length copy of the feline calicivirus genome do not require VpG for infectivity. Virology 210: 383-390
28. Stanley J, van Kammen A (1979) Nucleotide sequence adjacent to the proteins covalently linked to the cowpea mosaic virus genome. Eur J Biochem 101: 45-49
29. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progress multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4 673-4 680
30. Trono D, Andino R, Baltimore D (1988) An RNA sequence of hundreds of nucleotides at the 5′ end of poliovirus RNA is involved in allowing viral protein synthesis. J Virol 62: 2 291-2 299
31. Wimmer E (1982) Genome-linked proteins of viruses. Cell 28: 199-201
32. Wirblich C, Sibilia M, Boniotti MB, Rossi C, Thiel H-J, Meyers G (1995) 3C-like protease of rabbit hemorrhagic disease virus: identification of cleavage sites in the ORF1 polyprotein and analysis of cleavage specificity. J Virol 69: 7 159-7 168
33. Wirblich C, Thiel H-J, Meyers G (1996) Genetic map of the calicivirus rabbit hemorrhagic disease virus as deduced from in vitro translation studies. J Virol 70: 7 974-7 983