Sequencing of 42kb of the APO E-C2 gene cluster reveals a new gene: PEREC1

Mitochondrial DNA

Volumn 9, Issue 2, 1998, Pages 89-100

  Freitas, Elizabeth M ^a   Zhang, Wen Jie ^a   Lalonde, Jean Philippe ^a   Tay, Guan K ^a   Gaudieri, Silvana ^a   Ashworth, Linda K ^b   Dawkins, Roger L ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; APOLIPOPROTEIN; COSMID; EXPRESSED SEQUENCE TAG; FLUORESCENCE IN SITU HYBRIDIZATION; GENE CLUSTER; GENE SEQUENCING;

ALZHEIMER DISEASE; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANIMALS; APOLIPOPROTEINS E; BASE SEQUENCE; CAENORHABDITIS ELEGANS; CELL ADHESION MOLECULES; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 19; CORONARY DISEASE; COSMIDS; DATABASES, FACTUAL; EXPRESSED SEQUENCE TAGS; HELMINTH PROTEINS; HUMANS; MEMBRANE GLYCOPROTEINS; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PROTEINS; RECEPTORS, TUMOR NECROSIS FACTOR; RECEPTORS, TUMOR NECROSIS FACTOR, MEMBER 14; RECEPTORS, VIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN;

CAENORHABDITIS ELEGANS; POLIOVIRUS;

EID: 0032417381     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425179809086433     Document Type: Article

References (29)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, J. (1990). Basic Local Alignment Search Tool. J Mol Biol 215: 403-110.
2. Baker, K.B., Schaniel, A., Vestweber, D., and Scatz, G. (1990). A yeast mitochondrial outer membrane protein essential for protein import and cell viability. Nature 348: 605-609. (Pubitemid 120015114)
3. Batzer, M.A., Deninger, P.L., Hellmann-Blumberg, U., Jurka, J., Labuda, D., Rubin, CM., Schmid, C.W., Zietkiewicz, and Zuckerland, E. (1996). Standardized nomenclature for Alu repeats. J Mol Evol 42: 3-6. (Pubitemid 26030566)
4. Davignon, J., Gregg, R.E., and Sing, C.F. (1988). Apolipopro-tein E polymorphism and atherosclerosis. Arterioscl. 8: 1-21.
5. Daniel, V. (1993). GlutathioneS-transferases: gene structure and regulation of expression. Crit Rev Biochem and Mol Biol. 28:173-207. (Pubitemid 23160984)
6. de Jong P.J., Yokobata, K., Chen, C, Lohman, F., Pederson, L., McNinch J., and Van Dilla, M. (1989). Human chromosome specific partial digest libraries in lambda and cosmid vectors. Cytogenet Cell Genet. 51: 985.
7. Eberle, F., Dubreuil, P., Mattei, M.G., Delivard, E. and Lopez, M. (1995). The human PRR2 gene, related to the human poliovirus receptor gene (PVR), is the true homolog of the murine MPH gene. Gene 159: 267-272.
8. Fitch, DH., Bailey, WJ., Tagle, DA., Goodman M., Sieu L., and Slightom JL. (1991). Duplication of the gamma-globin gene mediated by LI long interspersed repetitive elements in an early ancestor of simian primates. PNAS 88:7396-400. (Pubitemid 21915158)
9. Kapitonov, V., and Jurka, J. (1996). The Age of Alu Subfamilies J Mol Evol 42: 59-65. (Pubitemid 26030574)
10. Kiebler, M., Pfaller, R., Sollner, T., Griffiths, G., Horstmann, H., Pfanner, N' and Neupert, W. (1990). Identification of a mitochondrial receptor complex required for recognition,md membrane insertion of precursor proteins. Nature 348:610-616. (Pubitemid 120015115)
11. Leelayuwaf, C, Pinelli, M., and Dawkins, R.L. (1995). Clustering of diverse replicated sequences in the Major Histocompatibility Complex (MHC): Evidence for en bloc duplication. J Immunol 155: 692-698.
12. Li W.H., Tanimura, M., I.uo, C.C., Datta, S. and Chan, L. (1988). The apolipoprolein multigene family: biosynthesis, structure-function relationships, and evolution. J. of Lip. Res. 29: 245-271.
13. Lislowskv. I (1993). GlutathioneS-transferases: Intracellular binding, detoxification and adaptive responses. In: " Hepatk and Bile Secretion Transport: Physiology and Pathophysiology, (Tavolini, N. and Berk, P.D., Eds.), Raven Press, New York, p397.
14. Luc, G., Bard, j VI., Arveiler, D., Evans, A., Cambou, J.P., Bingham, A. Amouyel, P., Schaffer, P., Ruidavets, J.B., Cambien, P., Prucharl, J.C. and Documetier, P. (1994). Impact of apolipoprolein E polymorphism on lipoproteins and risk of myocardial infarction. Arterioscl.& rhomb. 14: 1412-1419.
15. Lundwall, A. (1996). The structure of the semenogelin gene locus: nucleotide sequence of the intergenic and the flanking DNA. Eur J Biochem235-466-70.
16. I.uo, C, Li, W. Moore, M. and Chan, L. (1986). Structure and Evolution of the Apolipoprotein Multigene Family. J Mol Biol 187 : 325-340. (Pubitemid 16083775)
17. Ohta, T (1991). Multigene families and the evolution of complexity. J MolBiol 33:34-41.
18. Rowen,L, Koop, B.F. and Hood, L. (1996). The complete 685-kilobase DNA sequence of the human β T cell receptor locus. Science 272: 1755-1762. (Pubitemid 26256389)
19. Solovycv, Vv V., Salamov, A.A., and Lawrence, C.B. (1994). Predicting internal exons by oligonucleotide composition ami discriminant analysis of spliceable open reading frames. Nuc Acids Res 22: 5156-5163.
20. Stengard, J.11., Zerba, K.E., Pekkanen, J., Ehnholm, C, Nis-sinen, A. and Sing, C.'.F. (1995). Apolipoprotein E polymorphism predicts death from coronary heart disease in a longitudinal study of elderly Finnish men. Circulation 91:265-269.
21. Snyder, E.E. and Stormo, CD., (1995). Identification of coding regions in genomic DNA. J Mol Biol 248: 1-18.
22. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994). CLUS-TALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nuc Acids Res 22: 4673-80. (Pubitemid 24354800)
23. Tokunaga, K., Saueracker, G., Kay, P.H., Christiansen, FX, Anand, R. and Dawkins, R.L. (1988). Extensive deletions and insertions in different MHC supratypes detected by pulsed field gel electrophoresis. J Exp Med 168: 933-940.'
24. Utermann, G. (1994). Alzheimer's Disease: The Apolipo-rotein E connection. Curr Biol 4: 362-365.
25. Weisgraber, K.H., Roses, A.D. and Strittmatter, WJ. (1994). The role of apolipoprotein E in the nervous system. CurOpin Lip 5: 110-116. (Pubitemid 24116875)
26. Wilson, R.K. (1993). High-throughput purification of Ml3 templates for DNA sequencing. Biotechniques 15: 414420.
27. Xu, Y., Mural, R.J., Shah, M.B., and Uberbacher, E.G. (1994). Recognizing Exons in Genomic Sequence Using GRAIL II. "In Genetic Engineering: Principles and Methods" (JaneSetlow, Ed.), Plenum Press, Vol 15.
28. Yu, C.E., Payami, IE, Olson, J.M., Boehnke, M., Wijsman, E.M., Orr, H.T., Kukul'l, W.A., Goddard, K.A.B., Nemens, E., White, J.A., AJonso, M.E., Taylor, T.D., Ball, M.J., Kaye, J., Morris, J., Chui, H' Sadovnick, A.D., Martin, G.M., Larson, E.B., Heston, L.L., Bird, T.D. and Schellenberg, G.D. (1994). The apolipoprotein E/CI/CII gene cluster and late-onset Alzheimer's Disease. Am J Hum Genet 54 : 631-642. (Pubitemid 24089602)
29. Zhang, W.J., Degli-Esposti, M.A., Cobain, T.J., Cameron, P.U., Christiansen, FT. and Dawkins, R.L. (1990). Differences in gene copy number carried by different MHC ancestral haplotypes. Quantitation after physical separation of haplotypes by pulsed field gel electrophoresis. J Exp Med 171: 2101-2114. (Pubitemid 20200246)