Recent advances in protein methylation: Enzymatic methylation of nucleic acid binding proteins

Amino Acids

Volumn 15, Issue 4, 1998, Pages 291-306

  Kim, Sangduk ^a,c   Park, G H ^a   Paik, W K ^b  

^a Korea University   (South Korea)

^b Ajou University School of Medicine   (South Korea)

^c Korea University College of Medicine   (South Korea)

Author keywords

Nucleic acid binding protein; Protein methylase I; Protein arginine methylation; RGG motiff; S adenosyl L methionine

Indexed keywords

ARGININE; CELLULOSE; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; MESSENGER RNA; METHYL GROUP; NUCLEIC ACID BINDING PROTEIN; PROTEIN METHYLTRANSFERASE; RECOMBINANT PROTEIN; SINGLE STRANDED DNA; TRYPSIN;

CELL CULTURE; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN METHYLATION; PROTEIN NUCLEIC ACID INTERACTION; REVIEW; RNA BINDING;

AMINO ACID SEQUENCE; ANIMALS; BRAIN; CATTLE; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEIN GROUP A-B; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; LIVER; METHYLATION; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEIN-ARGININE N-METHYLTRANSFERASE; RATS; RIBONUCLEOPROTEINS; TIME FACTORS;

EID: 0032408321     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF01320895     Document Type: Review

References (59)

1. Abramovich C, Yakobson B, Chebath J, Revel M (1997) A protein-arginine methyltransferase binds to the intracytoplasmic domain of the IFNAR1 chain in the type 1 interferon receptor. EMBO J 16: 260-266
2. Adams SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G (1986) mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol 6: 2932-2943
3. Baldwin GS, Carnegie PR (1971) Specific enzymic methylation of an arginine in the experimental allergic encephalomyelitis protein from human myelin. Science 171: 579-581
4. Beyer A, Christensen ME, Walker BW, LeStourgeon WM (1977) Identification and characterization of the packaging proteins of core 40S hnRNP particles. Cell 11: 127-138
5. Birney E, Kumar S, Krainer AR (1993) Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 21: 5803-5816
6. G-dimethylarginine in nuclear protein fractions. Biochim Biophys Res Commun 74: 969-976
7. Boffa LC, Stemer R, Vidali G, Allfrey VG (1979) Post-synthetic modification of nuclear proteins: high mobility group proteins are methylated. Biochim Biophys Res Commun 89: 1322-1327
8. Borun TW, Pearson D, Paik WK (1972) Studies of histone methylation during the HeLa S-3 cell cycle. J Biol Chem 247: 4288-4298
9. Brostoff S, Eylar EH (1971) Localization of the methylated arginine in the A1 protein from myelin. Proc Natl Acad Sci USA 68: 765-769
10. Burgess WH, Bizik J, Mehlman T, Quarto N, Rifkin D (1991) Direct evidence for methylation of arginine residues in high molecular weight forms of basic fibroblast growth factor. Cell Regul 2: 87-93
11. Calnan BJ, Tidor B, Biancalana S, Hudson D, Frankel AD (1991) Arginine-mediated RNA recognition: the arginine fork. Science 24: 1167-1171
12. Chang FN, Navivkas IJ, Chang CN, Dancis BM (1976) Methylation of ribosomal proteins in HeLa cells. Arch Biochem Biophys 172: 627-675
13. Clarke S (1985) Protein carboxyl methyltransferases: two distinct classes of enzymes. Ann Rev Biochem 54: 479-506
14. Christensen ME, Fuxa KP (1988) A nucleolar protein B-36 contains a glycine and dimethylarginine-rich sequence conserved in several other nuclear RNA-binding protein. Biochem Biophy Res Commun 155: 1278-1283
15. Cobianchi F, Karpel RL, Williams KR, Notario V, Wilson S (1988) Mammalian heterogeneous nuclear ribonucleoprotein complex protien AI: large-scale overproduction in Escherichia coli and cooperative binding to single-stranded nucleic acids. J Biol Chem 263: 1063-1071
16. Cook RJ, Lloyd RS, Wagner C (1991) Isolation and characterization of cDNA clones for rat liver 10-formyltetrahydrofolate dehydrogenase. J Biol Chem 266: 4965-4973
17. Cornnell GJ, Illangesekare M, Yarus M (1993) Three small ribooligonuclrotides with specific arginine sites. Biochemistry 32: 5497-5502
18. Duerre JA, DiMaria P, Kim S, Paik WK (1991) Current status of protein methylation in carcinogensis. In: Pimental E, Perucho (eds) CRC critical review in oncogenesis, vol 2. CRC Press, Boca Raton, FL, pp 380-391
19. Dreyfuss G, Matunis MJ, Pinol-Roma S, Burd CG (1992) HnRNP proteins and the biogenesis of mRNA. Annu Rev Biochem 62: 289-321
20. Feldmann H, Aigle M, Aljinovic G, Andre B, Baclet MD, Barthe C, Baur A, Becam AM, Biteau N (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13: 5795-5809
21. Gary JD, Lin W-J, Yang MC, Herschman HR, Clarke S (1996) The predominant protein-arginine methyltransferase from Saccharomyces cerevisiae. J Biol Chem 271: 12585-12594
22. Ghosh SK, Paik WK, Kim S (1988) Purification and molecular identification of two protein methylases 1 from calf brain: myelin basic protein- and histone-specific enzyme. J Biol Chem 269: 1075-1082
23. Ghosh SK, Syed SK, Jung S, Paik WK, Kim S (1990) Substrate specificity for myelin basic protein-specific protein methylase I. Biochim Biophys ACTA 1039: 142-148
24. Herrick G, Delius H, Alberts B (1976) Single-stranded DNA structure and DNA polymerase activity in the presence of nucleic acid helix-unwinding proteins from calf thymus. J Biol Chem 251: 2142-2146
25. Johnson BA, Aswad DW (1990) Protein carboxylmethylation in nervous tissues. In: Paik WK, Kim S (eds) Protein methylation. CRC Press, Boca Raton, FL, pp 195-210
26. G-dimethylarginine and NE-mono, di-, and trimethyllysine, and glucosylgalactosyl- and galactosyl-D-hydroxylysine from human urine. J Biol Chem 245: 5751-5758
27. Kalasz H, Kovacs GH, Nagy J, Tyhak E, Bames WT (1978) Identification of N-methylated basic amino acids from human adult teeth. J Dent Res 57: 128-132
28. Kenan, DJ, Query CC, Keene JD (1991) RNA recognition: towards identifying determinants of specificity. Trends Biochem Sci 16: 214-220
29. Kim S, Ghosh SK, Chanderkar LP (1990) Protein-arginine methylation. In: Paik WK, Kim S (eds) Protein methylation. CRC Press, Boca Raton, FL, pp 75-95
30. G-methylarginine residues in human heterogeneous RNP protien A1: Phe/Gly-Gly-Gly-Arg-Gly-Gly-Gly/Phe is a preferred recognition motif. Biochemistry 36: 5185-5192
31. Krupenko SA, Wagner C, Cook RJ (1997) Expression, purification, and properties of the aldehyde dehydrogenase homologous carboxyl-terminal domain of rat 10-formyltetrahydrofolate dehydrogenase. J Biol Chem 272: 10266-10272
32. Kumar A, Williams KR, Szer W (1986) Purification and domain structure of core hnRNP protein A1 and A2 and their relationship to single-stranded DNA-binding proteins. J Biol Chem 261: 11266-11273
33. Kumar A, Casa-Finet JR, Luneau DJ, Karpel RL, Merrill BM, Williams KR. Wilson S (1990) Mammalian heterogeneous nuclear ribonucleoprotein A1: nucleic acid binding properties of the COOH-terminal domain. J Biol Chem 265: 17094-17100
34. Lapeyre B, Amalric F, Ghaffari SH, Rao V, Dumbar TS, Olson MOJ (1986) Protein and cDN A sequence of a glycine-rich, dimethylarginine containing region located near the carboxyl-terminal end of nucleolin (C23 and 100kDa). J Biol Chem 261: 9167-9173
35. Lawrence F, Robert-Gero M (1990) Natural and synthetic analogs of S-adenosylhomocysteine and protein methylation. In: Paik WK, Kim S (eds) Protein methylation. CRC Press, Boca Raton, FL, pp 305-340
36. Lin W-J, Gary JD, Yang MC, Clarke S, Herschman HR (1996) The mammalian immediate-early TIS21 protien and the leukemia-associated BTG1 protein interact with a protein-arginine N-methyltransferase. J Biol Chem 271: 15034-15044
37. Liu Q, Dreyfuss G (1995) In vivo and in vitro arginine methylation of RNA-binding proteins. Mol Cell Biol 15: 2800-2808
38. G-dimethylarginine in nucleolar protein C23. Biochemistry 24: 6025-6028
39. G-dimethylarginine. J Biol Chem 260: 14304-14310
40. Merrill BM, LoPresti MB, Stone KL, Williams KW (1986) High pressure liquid chromatography purification of UP1 and UP2, two related single-stranded nucleic acid-binding proteins from calf thymus. J Biol Chem 261: 878-883
41. Najbauer J, Johnson BA, Young AL, Aswad DW (1993) Peptides with sequences similar to glycine, arginine-rich motifs in proteins interacting with RNA are efficiently recognized by methyltransferase(s) modifying arginine in numerous proteins. J Biol Chem 268: 10501-10509
42. Oliva A, Galletti P, Zappia V, Paik WK, Kim S (1980) Studies on substrate specificity of S-adenosylmethionine:protein-carbxyl methyltransferase from calf brain. Eur J Biochem 104: 157-164
43. Paik WK, Kim S (1967) Enzymatic methylation of protein fraction from calf thymus nuclei. Biochem Biophys Res Commun 29: 14-20
44. Paik WK, Kim S (1980) Enzymology of protein methylation. In: Meister A (ed) Biochemistry: a series of monographs, vol 1. John Wiley & Sons New York, pp 112-141
45. Paik WK, Kim S (1985) Protein methylation In: Freeman RB, Hawkins HC (eds) The enzymology of post-translational modification of proteins, vol 2. Academic Press, London, pp 187-228
46. Park GH, Chanderkar LP, Paik WK, Kim S (1986) Myelin basic protein inhibits histone-specific protein methylase I. Biochim Biophys Acta 874: 30-39
47. Park S, Park GH, Gu H, Hwang W-I, Lim IK, Paik WK, Kim S (1997) Heterogeneous nuclear RNP protein A1-arginine methylation during HCT-48 cell cycle. Biochem Mol Biol Int 42: 657-666
48. Pype S, Siegers H, Moens L, Merlevede W, Goris J (1994) Tyrosine phosphorylation of a M, 38,000 A/B-type hnRNP proteins selectively modulates its RNA binding. J Biol Chem 269: 31457-31465
49. Rajpurohit R, Lee SO, Park JO, Paik WK, Kim S (1994) Enzymatic methylation of recombinant heterogeneous nuclear RNP protein A1: dual substrate specificity for S-adenosylmethionine:histone-arginine N-methyl transferase. J Biol Chem 269: 1075-1082
50. Rajpurohit R, Paik WK, Kim S (1994) Effect of enzymatic methylation of heterogeneous ribonucleoprotein particle A1 on its nucleic-acid binding and controlled proteolysis. Biochem J 304: 903-909
51. Rawal N, Rajpurihit R, Lischwe MA, Williams KR, Paik WK, Kim S (1995) Structural specificity of substrate for S-sdenosylmethionine: protein arginine N-methyltransferases. Biochim Biophys ACTA 1248: 11-18
52. Rawal N, Rajpurohit R, Paik WK, Kim S (1994) Purification and characterization of S-adenosylmethionine-protein-arginine N-methyltransferase from rat liver. Biochem J 300: 383-389
53. G-Dimethylarginine in myosin during muscle development. Biochem Biophys Res Commun 43: 644-650
54. Siegel FL, Vincent PL, Neal TL, Wright LS, Heth AA, Rowe PM (1990) Calmodulin and protein methylation. In: Paik WK, Kim S (eds) Protein methylation. CRC Press, Boca Raton, FL, pp 33-58
55. Sommers A, Moscatelli D, Rifkin DB (1989) An amino-termially extended and post-translationally modified form of a 25-kD basic fibroblast growth factor. Biochem Biophys Res Commun 160: 1267-1274
56. Yoo BC, Park GH, Okuda H, Takaku T, Kim S, Hwang WI (1999) Inhibitory effect of arginine-derivatives from ginseng extract and basic amino acids on protein-arginine N-methyltransferase. Amino Acids (in press)
57. Wang C, Lazarides R, O'Connor CM, Clarke S (1982) Methylation of chicken fibroblast heat shock proteins at lysyl and arginyl residues. J Biol Chem 257: 8356-8362
58. Williams KR, Stone KL, LoPresti MB, Merrill BM, Plank SR (1985) Amino acid sequence of the UP1 calf thymus helix-destabilizing protien and its homology to an analogous protein from mouse myeloma. Proc Natl Acad Sci USA 82: 5666-5670
59. Wold F (1981) Chemical modification of protein. Ann Rev Biochem 50: 783-814