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Volumn 14, Issue 10, 1998, Pages 839-845

SALSA: Improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; DATA BASE; GENETIC PROCEDURES; INFORMATION RETRIEVAL; INTERNET; PRIORITY JOURNAL; PROTEIN ASSEMBLY; SPECIES DIFFERENCE;

EID: 0032406130     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.10.839     Document Type: Article
Times cited : (11)

References (15)
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    • Altschul, S.F. and Gish, W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
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    • Altschul, S.F.1    Gish, W.2
  • 4
    • 0029184821 scopus 로고
    • Linear-space algorithms that build local alignments from fragments
    • Chao, K.-M. and Miller, W. (1995) Linear-space algorithms that build local alignments from fragments. Algorithmica, 13, 106-134.
    • (1995) Algorithmica , vol.13 , pp. 106-134
    • Chao, K.-M.1    Miller, W.2
  • 6
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh, O. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708.
    • (1982) J. Mol. Biol. , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 7
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S. and Henikoff, J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 8
    • 0030462897 scopus 로고    scopus 로고
    • Parallel hardware for sequence comparison and alignment
    • Hughey, R. (1996) Parallel hardware for sequence comparison and alignment. Comput. Applic. Biosci., 12, 473-479.
    • (1996) Comput. Applic. Biosci. , vol.12 , pp. 473-479
    • Hughey, R.1
  • 9
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and Altschul, S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 10
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D.J. and Pearson, W.R. (1985) Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 11
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson, W.R. (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol., 183, 63-98.
    • (1990) Methods Enzymol. , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 12
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith Waterman and FASTA algorithms
    • Pearson, W.R. (1991) Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith Waterman and FASTA algorithms. Genomics, 11, 635-650.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 13
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 14
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T. and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.S.2
  • 15
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    • Rapid similarity searches of nucleic acid and protein data banks
    • Wilbur, W.J. and Lipman, D.J. (1983) Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl Acad. Sci. USA, 80, 726-730.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.