Macromolecular organization and genetic mapping of a rapidly evolving chromosome-specific tandem repeat family (B77) in cotton (Gossypium)

Plant Molecular Biology

Volumn 38, Issue 6, 1998, Pages 1031-1041

  Zhao, Xinping ^a   Ji, Yuanfu ^a   Ding, Xiaoling ^a   Stelly, David M ^a   Paterson, Andrew H ^a  

^a NONE

Author keywords

Evolution; Fluorescence in situ hybridization (FISH); Genome; Repetitive DNA

Indexed keywords

CHROMOSOMAL LOCALIZATION; DIPLOIDY; DNA AMPLIFICATION; GENOME ORGANIZATION; GOSSYPIUM BARBADENSE; GOSSYPIUM GOSSYPIOIDES; IN SITU HYBRIDIZATION; LINKAGE GROUP; NICOTIANA ALATA; PHYLOGENY; PLANT GENOME; REPETITIVE DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RETROPOSON; RIBOSOMAL RNA; SEQUENCE HOMOLOGY; TETRAPLOIDY;

EMBRYOPHYTA; GOSSYPIOIDES; GOSSYPIUM; GOSSYPIUM BARBADENSE; GOSSYPIUM GOSSYPIOIDES; GOSSYPIUM HIRSUTUM; NICOTIANA ALATA;

EID: 0032405647     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006073116627     Document Type: Article

References (42)

1. Arumuganathan K, Martin GB, Telenius H, Tanksley SD, Earle ED: Chromosome 2-specific DNA clones from flow-sorted chromosomes of tomato. Mol Gen Genet 242: 551-558 (1994).
2. Awgulewitsch A, Bunemann H: Isolation of Y-chromosomal repetitive DNA sequences of Drosophila hydei via enrichment of chromosome-specific sequences by heterogeneous hybridization between female and male DNA. J Biochem Biophys Meth 12: 37-50 (1986).
3. Beasley JO: Meiotic chromosome behavior in species hybrids, haploids, and induced polyploids ofGossypium. Genetics 27: 25-54 (1942).
4. Burk RD, Stamberg J, Young KE, Smith KD: Use of repetitive DNA for diagnosis of chromosomal rearrangements. Hum Genet 64: 339-342 (1983).
5. Chittenden LM, Schertz KF, Lin Y-R, Wing RA, Paterson AH: A detailed RFLP map of Sorghum bicolor x S. propinquum suitable for high- density mapping suggests ancestral duplication of chromosome or chromosomal segments. Theor Appl Genet 87: 925-933 (1994).
6. Crane CF, Price HJ, Stelly DM, Czeshin DG: Identification of a homoeologous chromosome pair by in situ DNA hybridization to ribosomal RNA loci in meiotic chromosomes of cotton (Gossypium hirsutum). Genome 35: 1015-1022 (1993).
7. Cronn EC, Zhao X, Paterson AH, Wendel JF: Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J Mol Evol 42: 685-705 (1996).
8. Disteche C, Luthy D, Haslam DB, Hoar D: Prenatal identification of a deleted Y chromosome by cytogenetics and a Y-specific repetitive DNA probe. Hum Genet 67: 222-224 (1984).
9. Edwards GA, Endrizzi JE: Cell size, nuclear size, and DNA content relationships in Gossypium. Can J Genet Cytol 17: 181-186 (1976).
10. Endrizzi JE, Turcotte RJ, Kohel RJ: Qualitative genetics, cytology, and cytogenetics. ASA/CSSA/SSSA Publishers, Madison, WI (1984).
11. Endrizzi JE, Turcotte RJ, Kohel RJ: Genetics, cytology, and evolution of Gossypium. Adv Genet 23: 271-375 (1985).
12. Feinberg AP, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6-13 (1983).
13. Fryxell PA: A revised taxonomic interpretation of Gossypium L. (Malvaceae). Rheedea 2: 108-165 (1992).
14. Fryxell PA: The natural history of the cotton tribe. Texas A&M University Press, College Station, TX (1979).
15. Ganal MW, Broun P, Tanksley SD: Genetic mapping of tandemly repeated telomeric DNA sequences in tomato (Lycopersicon esculentum). Genomics 14: 444-448 (1992).
16. Hall KJ, Parker JS, Ellis THN: The relationship between genetic and cytogenetic map of pea. I. Standard and translocation karyotypes. Genome 40: 744-754 (1997).
17. Hall KJ, Parker JS, Ellis THN, Turner T, Knox MR, Hofer JMI, Lu J, Ferrandiz C, Hunter PJ, Taylor JD, Baird K: The relationship between genetic and cytogenetic map of pea. II. Physical maps of linkage mapping populations. Genome 40: 755-769 (1997).
18. Hanson RE, Islam-Faridi MN, Percival EA, Crane CF, Ji Y, McKnight TD, Stelly DM, Price HJ: Distributions of 5S and 18S-28S rDNA loci in a tetraploid cotton (Gossypium hirsutum L.) and its putative diploid ancestors. Chromosoma 105: 55-61 (1996).
19. Heslop-Harrison JS, Harrison GE, Leitch IJ: Reprobing of DNA:DNA in situ hybridization preparations. Technical Tips 8: 372-373 (1992).
20. Islam-Faridi MN, Mujeeb-Kazi A: Visualization of Secale cereale DNA in wheat germplasm by fluorescent in situ hybridization. Theor Appl Genet 90: 595-600 (1995).
21. Jewell DC, Islam-Faridi MN: Details of a technique for somatic chromosome preparation and C-banding of maize. In: Freeling M, Walbot W (eds) The Maize Handbook, pp. 484-493. Springer-Verlag, New York (1994).
22. Kimber G: Basis of the diploid-like meiotic behavior of polyploid cotton. Nature 191: 98-99 (1961).
23. Kohler MR, Vogt PH: Interstitial deletions of repetitive DNA blocks in dicentric human Y chromosomes. Chromosoma 103: 324-330 (1994).
24. Nickrent DL, Soltis DE: A comparision of angiosperm phylogenies from nuclear 18S rRNA and rbcL sequences. Ann MO Bot Gard 82: 208-234 (1995).
25. Nishioka Y, Dolan BM, Zahed L: Molecular characterization of a mouse Y chromosomal repetitive sequence amplified in distantly related species in the genus Mus. Genome 36: 588-593 (1993).
26. Nishioka Y, Lamothe E: Isolation and characterization of a mouse Y chromosomal repetitive sequence. Genetics 113: 417-432 (1986).
27. Nishioka Y, Lamothe E: Isolation of human Y chromosomal major repetitive sequences from a flow-sorted Y chromosomal library. Am J Med Genet 27: 711-717 (1987).
28. Paterson AH, Brubaker CL, Wendel JF: A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep 11: 122-127 (1993).
29. Reinisch AJ, Dong J-M, Brubaker CL, Stelly DM, Wendel JF, Paterson AH: A detailed RFLP map of cotton, Gossypium hirsutum x Gossypiumbarbadens: chromosome organization and evolution in a disomic polyploid genome. Genetics 138: 829-847 (1994).
30. Roder MS, Lapitan NL, Sorrells ME, Tanksley SD: Genetic and physical mapping of barley telomeres. Mol Gen Genet 238: 294-303 (1993).
31. Royo J, Nass N, Matton DP, Okamoto S, Clarke AE, Newbigin E: A retrotransposon-like sequence linked to the S-locus of Nicotiana alata is expressed in styles in response to touch. Mol Gen Genet 250: 180-188 (1996).
32. Sanger F, Nicklen S, Coulson AR: DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5363-5367 (1977).
33. Stallings RL, Whitmore SA, Doggett NA, Callen DF: Refined physical mapping of chromosome 16-specific low-abundance repetitive DNA sequences. Cytogenet Cell Genet 63: 97-101 (1993).
34. Wendel JF: New World cottons contain Old World cytoplasm. Proc Natl Acad Sci USA 86: 4132-4136 (1989).
35. Wendel JF, Albert VA: Phylogenetis of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications. Syst Bot 17: 115-143 (1992).
36. Wendel JF, Schnabel A, Seelanan T: Bi-directional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc Natl Acad Sci USA 92: 280-284 (1995).
37. Wendel JF, Schnabel A, Seelanan T: An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol Phyl Evol 4: 298-313 (1995).
38. Wu KS, Tanksley SD: Genetic and physical mapping of telomeres and macrosatellites of rice. Plant Mol Biol 22: 861-872 (1993).
39. Zhao X, Wing RA, Paterson AH: Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.). Genome 38: 1177-1188 (1995).
40. Zhao X, Wu T, Xie Y, Wu R: Genome-specific repetitive sequences in the genus Oryza. Theor Appl Genet 78: 201-209 (1989).
41. Zhao X, Zhang H-B, Wing RA, Paterson AH: A simple method for isolation of megabase DNA from cotton. Plant Mol Biol Rep 12: 110-115 (1994).
42. Zhao X, Si Y, Hansen RE, Crane CF, Rice HJ, Stelly DM, Wendel JF, Paterson AH: Dispersed repetative DNA has spread to new genomes in cotton. Genome Res 8: 479-492 (1998).