Dynamics of a bis-intercalator DNA complex by 1H-detected natural abundance 13C NMR spectroscopy

Biochemistry

Volumn 37, Issue 48, 1998, Pages 16863-16876

  Spielmann, H Peter ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; CONFORMATIONAL TRANSITION; DNA METABOLISM; INTERCALATION COMPLEX; LIGAND BINDING; PRIORITY JOURNAL; PROTEIN DNA BINDING; STRUCTURE ANALYSIS;

EID: 0032374093     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980789e     Document Type: Article

References (47)

1. Jacobsen, J. P., Pedersen, J. B., Hansen, L. F., and Wemmer, D. E. (1995) Nucleic Acids Res. 23, 753-760.
2. Hansen, L. F., Jensen, L. K., and Jacobsen, J. P. (1996) Nucleic Acids Res. 24, 859-867.
3. Brooks, C. L., III, Karplus, M., and Pettitt, B. M. (1988) Proteins: A Theoretical Perspective of Dynamics, Structure and Thermodynamics, J. Wiley and Sons, New York.
4. Bax, A., Sparks, S. W., and Torchia, D. A. (1989) Methods Enzymol. 176, 134-150.
5. Nirmala, N. R., and Wagner, G. (1988) J. Am. Chem. Soc. 110, 7557-7558.
6. Palmer, A. G., 3rd, Rance, M., and Wright, P. E. (1991) J. Am. Chem. Soc. 113, 4371-4380.
7. Palmer, A. G., 3rd, Hochstrasser, R. A., Millar, D. P., Rance, M., and Wright, P. E. (1993) J. Am. Chem. Soc. 115, 6333-6345.
8. Alattia, T., Padilla, A., and Cavè, A. (1996) Eur. J. Biochem. 257, 561-574.
9. Mispelter, J., Lefevre, C., Adjadj, E., Quiniou, E., and Favaudon, V. (1995) J. Biomol. NMR 5, 233-244.
10. Spielmann, H. P. (1998) Biochemistry 37, 5426-5438.
11. Borer, P. N., LaPlante, S. R., Kumar, A., Zanatta, N., Martin, A., Hakkinen, A., and Levy, G. C. (1994) Biochemistry 33, 2441-2450.
12. Gaudin, F., Paquet, F., Chanteloup, L., Beau, J. M., Nguyen, T. T., and Lancelot, G. (1995) J. Biomol. NMR 5, 9-58.
13. Hogan, M. E., and Jardetzky, O. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 6341-6345.
14. Hogan, M. E., and Jardetzky, O. (1980) Biochemistry 19, 2079-2085.
15. Hogan, M. E., and Jardetzky, O. (1980) Biochemistry 19, 3460-3468.
16. Keepers, J. W., and James, T. L. (1982) J. Am. Chem. Soc. 104, 929-939.
17. Kochoyan, M., Leroy, J. L., and Gueron, M. (1987) J. Mol. Biol. 196, 599-609.
18. Gueron, M., Kochoyan, M., and Leroy, J. L. (1987) Nature 328, 89-92.
19. Briki, F., Ramstein, J., Lavery, R., and Genest, D. (1991) J. Am. Chem. Soc. 113, 2490-2493.
20. Spielmann, H. P., Wemmer, D. E., and Jacobsen, J. P. (1995) Biochemistry 34, 8542-8553.
21. Lavery, R., and Sklenar, H. (1988) J. Biomol. Struct. Dyn. 6, 63-91.
22. Lavery, R., and Sklenar, H. (1989) J. Biomol. Struct. Dyn. 6, 655-667.
23. Staerk, D., Hamed, A. A., Pedersen, E. B., and Jacobsen, J. P. (1997) Bioconjugate Chem. 8, 869-877.
24. Delsuc, M. A., and Lallemand, J. Y. (1986) J. Magn. Reson. 69, 504-507.
25. States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292.
26. Schmieder, P., Ippel, J. H., van den Elst, H., van der Marel, G. A., Altona, C., and Kessler, H. (1992) Nucleic Acids Res. 20, 4747-4751.
27. Palmer A. G., 3rd, Skelton, N. J., Chazin, W. J., Wright, P. E., and Ranee, M. (1992) Mol. Phys. 75, 699-711.
28. Abragam, A. (1968) The principles of Nuclear Magnetism, Clarendon Press, Oxford, U.K.
29. Williamson, J. R., and Boxer, S. G. (1988) Nucleic Acids Res. 16, 1529-1540.
30. Lipari, G., and Szabo, A. J. (1982) J. Am. Chem. Soc. 104, 4546-4559.
31. Lipari, G., and Szabo, A. J. (1982) J. Am. Chem. Soc. 104, 4559-4570.
32. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989-4991.
33. Bloom, M., Reeves, L. W., and Wells, E. J. (1965) J. Chem. Phys. 42, 1615-1624.
34. Mandel, A. M., Akke, M., and Palmer, A. G., 3rd. (1995) J. Mol. Biol. 246, 144-163.
35. Liu, H., Spielmann, H. P., Ulyanov, N. B., Wemmer, D. E., and James, T. L. (1995) J. Biomol. NMR 6, 390-402.
36. Eimer, W., Williamson, J. R., Boxer, S. G., and Pecora, R. (1990) Biochemistry 29, 799-811.
37. Saenger, W. (1984) Principles of Nucleic Acid Structure, Springer-Verlag, New York.
38. Macaya, R. F., Schultze, P., and Feigon, J. (1992) J. Am. Chem. Soc. 114, 781-783.
39. Gorenstein, D. G. (1994) Chem. Rev. 94, 1315-1338.
40. Kennedy, M. A., Nuutero, S. T., Davis, J. T., Drobny, G. P., and Reid, B. R. (1993) Biochemistry 32, 8022-8035.
41. Lingbeck, J., Kubinec, M. G., Miller, J., Reid, B. R., Drobny, G. P., and Kennedy, M. A. (1996) Biochemistry 35, 719-734.
42. McAteer, K., Ellis, P. D., and Kennedy, M. A. (1995) Nucleic Acids Res. 23, 3962-3966.
43. Allawi, H. T., and SantaLucia, J. (1997) Biochemistry 36, 10581-10594.
44. SantaLucia, J., Jr., Allawi, H. T., and Seneviratne, P. A. (1996) Biochemistry 35, 3555-3562.
45. Beamer, L. J., and Pabo, C. O. (1992) J. Mol. Biol. 227, 177-196.
46. Botuyan, M. V., Keire, D. A., Kroen, C., and Gorenstein, D. G. (1993) Biochemistry 32, 6863-6874.
47. Karslake, C., Botuyan, M. V., and Gorenstein, D. G. (1992) Biochemistry 31, 1849-1858.