메뉴 건너뛰기




Volumn 47, Issue 3, 1998, Pages 427-444

Testing Phylogenetic Methods with Tree Congruence: Phylogenetic Analysis of Polymorphic Morphological Characters in Phrynosomatid Lizards

Author keywords

Accuracy; Congruence; Distance; Likelihood; Morphology; Parsimony; Polymorphic characters

Indexed keywords


EID: 0032351679     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/106351598260806     Document Type: Article
Times cited : (87)

References (63)
  • 1
    • 0026914673 scopus 로고
    • Testing phylogenetic approaches with empirical data, as illustrated with the parsimony method
    • ALLARD, M. W., AND M. M. MIYAMOTO. 1992. Testing phylogenetic approaches with empirical data, as illustrated with the parsimony method. Mol. Biol. Evol. 9:778-786.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 778-786
    • Allard, M.W.1    Miyamoto, M.M.2
  • 2
    • 0031084426 scopus 로고    scopus 로고
    • Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony
    • BERLOCHER, S. H., AND D. L. SWOFFORD. 1997. Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony. Syst. Biol. 46:211-215.
    • (1997) Syst. Biol. , vol.46 , pp. 211-215
    • Berlocher, S.H.1    Swofford, D.L.2
  • 3
    • 0001822040 scopus 로고
    • Anguid lizards of the genus Abronia: Revisionary notes, description of four new species, a phylogenetic analysis, and key
    • CAMPBELL, J. A., AND D. R. FROST. 1993. Anguid lizards of the genus Abronia: Revisionary notes, description of four new species, a phylogenetic analysis, and key. Bull. Am. Mus. Natl. Hist. 216:1-121.
    • (1993) Bull. Am. Mus. Natl. Hist. , vol.216 , pp. 1-121
    • Campbell, J.A.1    Frost, D.R.2
  • 4
    • 0014082615 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • CAVALLI-SFORZA, L. L., AND A. W. F. EDWARDS. 1967. Phylogenetic analysis: Models and estimation procedures. Am. J. Hum. Genet. 19:233-257.
    • (1967) Am. J. Hum. Genet. , vol.19 , pp. 233-257
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 5
    • 84959758123 scopus 로고
    • Congruence between morphometric and allozyme data for Menidia species: A reappraisal
    • COLLESS, D. H. 1980. Congruence between morphometric and allozyme data for Menidia species: A reappraisal. Syst. Zool. 29:288-299.
    • (1980) Syst. Zool. , vol.29 , pp. 288-299
    • Colless, D.H.1
  • 6
    • 0031224810 scopus 로고    scopus 로고
    • Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
    • CUNNINGHAM, C. W. 1997. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46:464-478.
    • (1997) Syst. Biol. , vol.46 , pp. 464-478
    • Cunningham, C.W.1
  • 8
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • DIXON, M. T., AND D. M. HILLIS. 1993. Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis. Mol. Biol. Evol. 10:256-267.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 10
    • 0001765601 scopus 로고
    • Estimation of conservatism of characters by constancy within biological populations
    • FARRIS, J. S. 1966. Estimation of conservatism of characters by constancy within biological populations. Evolution 20:587-591.
    • (1966) Evolution , vol.20 , pp. 587-591
    • Farris, J.S.1
  • 11
    • 84963028421 scopus 로고
    • A successive approximations approach to character weighting
    • FARRIS, J. S. 1969. A successive approximations approach to character weighting. Syst. Zool. 18:374-385.
    • (1969) Syst. Zool. , vol.18 , pp. 374-385
    • Farris, J.S.1
  • 12
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • FARRIS, J. S. 1989. The retention index and the rescaled consistency index. Cladistics 5:417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 13
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 14
    • 0001708655 scopus 로고
    • Evolutionary trees from gene frequencies and quantitative characters: Finding maximum likelihood estimates
    • FELSENSTEIN, J. 1981. Evolutionary trees from gene frequencies and quantitative characters: Finding maximum likelihood estimates. Evolution 35:1229-1242.
    • (1981) Evolution , vol.35 , pp. 1229-1242
    • Felsenstein, J.1
  • 15
    • 0024181337 scopus 로고
    • Phylogenies and quantitative characters
    • FELSENSTEIN, J. 1988. Phylogenies and quantitative characters. Annu. Rev. Ecol. Syst. 19:445-471.
    • (1988) Annu. Rev. Ecol. Syst. , vol.19 , pp. 445-471
    • Felsenstein, J.1
  • 16
    • 0004130462 scopus 로고
    • Dept. of Genetics, Univ. of Washington, Seattle
    • FELSENSTEIN, J. 1995. PHYLIP, version 3.57c. Dept. of Genetics, Univ. of Washington, Seattle.
    • (1995) PHYLIP, Version 3.57c
    • Felsenstein, J.1
  • 18
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • FITCH, W. M., AND E. MARGOLIASH. 1967. Construction of phylogenetic trees. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 19
    • 0002069577 scopus 로고
    • A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata)
    • FROST, D. R., AND R. ETHERIDGE. 1989. A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata). Misc. Publ. Mus. Natl. Hist. Univ. Kans. 81:1-65.
    • (1989) Misc. Publ. Mus. Natl. Hist. Univ. Kans. , vol.81 , pp. 1-65
    • Frost, D.R.1    Etheridge, R.2
  • 23
    • 11944260381 scopus 로고
    • Approaches for assessing phylogenetic accuracy
    • HILLIS, D. M. 1995. Approaches for assessing phylogenetic accuracy. Syst. Biol. 44:3-16.
    • (1995) Syst. Biol. , vol.44 , pp. 3-16
    • Hillis, D.M.1
  • 24
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • HILLIS, D. M., J. P. HUELSENBECK, AND C. W. CUNNINGHAM. 1994. Application and accuracy of molecular phylogenies. Science 264:671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 25
    • 11944268967 scopus 로고
    • The performance of phylogenetic methods in simulation
    • HUELSENBECK, J. P. 1995. The performance of phylogenetic methods in simulation. Syst. Biol. 44:17-48.
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 26
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • HUELSENBECK, J. P., AND D. M. HILLIS. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.P.1    Hillis, D.M.2
  • 27
    • 0029821511 scopus 로고    scopus 로고
    • Do phylogenetic methods produce trees with biased shapes?
    • HUELSENBECK, J. P., AND M. KIRKPATRICK. 1996. Do phylogenetic methods produce trees with biased shapes? Evolution 50:1418-1424.
    • (1996) Evolution , vol.50 , pp. 1418-1424
    • Huelsenbeck, J.P.1    Kirkpatrick, M.2
  • 28
    • 0041193562 scopus 로고
    • Random genetic drift in multi-allelic locus
    • KIMURA, M. 1955. Random genetic drift in multi-allelic locus. Evolution 9:419-435.
    • (1955) Evolution , vol.9 , pp. 419-435
    • Kimura, M.1
  • 29
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • KLUGE, A. G., AND J. S. FARRIS. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.
    • (1969) Syst. Zool. , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 30
    • 0028188568 scopus 로고
    • The accuracy of the maximum parsimony method lor phylogeny reconstruction with morphological characters
    • LAMBOY, W. F. 1994. The accuracy of the maximum parsimony method lor phylogeny reconstruction with morphological characters. Syst. Bot. 19:489-505.
    • (1994) Syst. Bot. , vol.19 , pp. 489-505
    • Lamboy, W.F.1
  • 31
    • 0024927261 scopus 로고
    • Phylogenetic hypotheses under the assumption of neutral quantitative-genetic variation
    • LYNCH, M. 1989. Phylogenetic hypotheses under the assumption of neutral quantitative-genetic variation. Evolution 43:1-17.
    • (1989) Evolution , vol.43 , pp. 1-17
    • Lynch, M.1
  • 32
    • 3343002484 scopus 로고
    • Taxonomic congruence
    • MICKEVICH, M. F. 1978. Taxonomic congruence. Syst. Zool. 27:143-158.
    • (1978) Syst. Zool. , vol.27 , pp. 143-158
    • Mickevich, M.F.1
  • 34
    • 11944269526 scopus 로고
    • Testing species phylogenies and phylogenetic methods with congruence
    • MIYAMOTO, M. M., AND W. M. FITCH. 1995. Testing species phylogenies and phylogenetic methods with congruence. Syst. Biol. 44:64-76.
    • (1995) Syst. Biol. , vol.44 , pp. 64-76
    • Miyamoto, M.M.1    Fitch, W.M.2
  • 35
    • 0002483638 scopus 로고
    • A phylogenetic study of the horned lizards, genus Phrynosoma, based on skeletal and external morphology
    • MONTANUCCI, R. R. 1987. A phylogenetic study of the horned lizards, genus Phrynosoma, based on skeletal and external morphology. Contrib. Sci. Natl. Hist. Mus. Los Angel. Cty. 113:1-26.
    • (1987) Contrib. Sci. Natl. Hist. Mus. Los Angel. Cty. , vol.113 , pp. 1-26
    • Montanucci, R.R.1
  • 36
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • NEI, M. 1972. Genetic distance between populations. Am. Nat. 106:238-292.
    • (1972) Am. Nat. , vol.106 , pp. 238-292
    • Nei, M.1
  • 37
    • 0028130956 scopus 로고
    • Evolution and phylogenetic significance of ribosomal gene location in chromosomes of squamate reptiles
    • PORTER, C. A., M. W. HADUIK, AND K. DE QUEIROZ. 1994. Evolution and phylogenetic significance of ribosomal gene location in chromosomes of squamate reptiles. Copeia 1994:302-313.
    • (1994) Copeia , vol.1994 , pp. 302-313
    • Porter, C.A.1    Haduik, M.W.2    De Queiroz, K.3
  • 38
    • 0029314481 scopus 로고
    • Phylogenetic relationships among phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: Substitutional bias and information content of transitions relative to transversions
    • REEDER, T. W. 1995. Phylogenetic relationships among phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: Substitutional bias and information content of transitions relative to transversions. Mol. Phylogenet. Evol. 4:203-222.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 203-222
    • Reeder, T.W.1
  • 39
    • 0001995326 scopus 로고    scopus 로고
    • Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data
    • REEDER, T. W., AND j. J. WIENS. 1996. Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data. Herpetol. Monogr. 10:43-84.
    • (1996) Herpetol. Monogr. , vol.10 , pp. 43-84
    • Reeder, T.W.1    Wiens, J.J.2
  • 40
    • 0009695775 scopus 로고
    • Taxonomic congruence re-examined
    • ROHLF, F. J., D. H. COLLESS, AND G. HART. 1983. Taxonomic congruence re-examined. Syst. Zool. 32:144-158.
    • (1983) Syst. Zool. , vol.32 , pp. 144-158
    • Rohlf, F.J.1    Colless, D.H.2    Hart, G.3
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 43
    • 0002657605 scopus 로고
    • Analysis of taxonomic congruence among morphological, ecological, and biogeographic data sets for the Leptopodomorpha (Hemiptera)
    • SCHUH, R. T., AND J. T. POLHEMUS. 1980. Analysis of taxonomic congruence among morphological, ecological, and biogeographic data sets for the Leptopodomorpha (Hemiptera). Syst. Zool. 29:1-26.
    • (1980) Syst. Zool. , vol.29 , pp. 1-26
    • Schuh, R.T.1    Polhemus, J.T.2
  • 44
    • 0001741944 scopus 로고
    • Methods for investigating taxonomic congruence and their application to the Leptopodomorpha
    • SCHUH, R. T., AND J. S. FARRIS. 1981. Methods for investigating taxonomic congruence and their application to the Leptopodomorpha. Syst. Zool. 30:331-351.
    • (1981) Syst. Zool. , vol.30 , pp. 331-351
    • Schuh, R.T.1    Farris, J.S.2
  • 45
    • 0001802886 scopus 로고
    • A review of phylogenetic hypotheses for the lizard genus Sceloporus (Phrynosomatidae): Implications for ecological and evolutionary studies
    • SITES, J. W., JR., J. W. ARCHIE, C. J. COLE, AND O. F. VILLELA. 1992. A review of phylogenetic hypotheses for the lizard genus Sceloporus (Phrynosomatidae): Implications for ecological and evolutionary studies. Bull. Am. Mus. Nat. Hist. 213:1-110.
    • (1992) Bull. Am. Mus. Nat. Hist. , vol.213 , pp. 1-110
    • Sites J.W., Jr.1    Archie, J.W.2    Cole, C.J.3    Villela, O.F.4
  • 46
    • 12044258285 scopus 로고
    • "Unordered" versus "ordered" characters
    • SLOWINSKI, J. B. 1993. "Unordered" versus "ordered" characters. Syst. Biol. 42:155-165.
    • (1993) Syst. Biol. , vol.42 , pp. 155-165
    • Slowinski, J.B.1
  • 47
    • 0002538181 scopus 로고
    • The Mexican and Central American lizards of the genus Sceloporus
    • SMITH, H. M. 1939. The Mexican and Central American lizards of the genus Sceloporus. Field Mus. Nat. Hist. Zool. Ser. 26:1-397.
    • (1939) Field Mus. Nat. Hist. Zool. Ser. , vol.26 , pp. 1-397
    • Smith, H.M.1
  • 48
    • 0346884856 scopus 로고
    • A phylogenetic analysis of the Caminacules. II. Estimating the true cladogram
    • SOKAL, R. R. 1983. A phylogenetic analysis of the Caminacules. II. Estimating the true cladogram. Syst. Zool. 32:185-201.
    • (1983) Syst. Zool. , vol.32 , pp. 185-201
    • Sokal, R.R.1
  • 49
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • SOKAL, R. R., AND C. D. MICHENER. 1958. A statistical method for evaluating systematic relationships. Univ. Kans. Sci. Bull. 28:1409-1438.
    • (1958) Univ. Kans. Sci. Bull. , vol.28 , pp. 1409-1438
    • Sokal, R.R.1    Michener, C.D.2
  • 50
    • 0039349984 scopus 로고
    • Character stability in 39 data sets
    • SOKAL, R. R., AND K. SHAO. 1985. Character stability in 39 data sets. Syst. Zool. 34:83-89.
    • (1985) Syst. Zool. , vol.34 , pp. 83-89
    • Sokal, R.R.1    Shao, K.2
  • 51
    • 0000790778 scopus 로고
    • Character states, morphological variation, and phylogenetic analysis: A review
    • STEVENS, P. F. 1991. Character states, morphological variation, and phylogenetic analysis: A review. Syst. Bot. 16:553-583.
    • (1991) Syst. Bot. , vol.16 , pp. 553-583
    • Stevens, P.F.1
  • 52
    • 0001396591 scopus 로고
    • Inferring evolutionary trees from gene frequency data under the principle of maximum parsimony
    • SWOFFORD, D. L., AND S. H. BERLOCHER. 1987. Inferring evolutionary trees from gene frequency data under the principle of maximum parsimony. Syst. Zool. 36:293-325.
    • (1987) Syst. Zool. , vol.36 , pp. 293-325
    • Swofford, D.L.1    Berlocher, S.H.2
  • 53
    • 0001140522 scopus 로고
    • Phylogeny reconstruction
    • (D. M. Hillis and C. Moritz, eds.). Sinauer, Sunderland, Massachusetts
    • SWOFFORD, D. L., AND G. J. OLSEN. 1990. Phylogeny reconstruction. Pages 411-501 in Molecular systematics, 1st edition (D. M. Hillis and C. Moritz, eds.). Sinauer, Sunderland, Massachusetts.
    • (1990) Molecular Systematics, 1st Edition , pp. 411-501
    • Swofford, D.L.1    Olsen, G.J.2
  • 54
    • 0003639099 scopus 로고
    • A re-evaluation of the Sceloporus scalaris group (Sauria: Iguanidae)
    • THOMAS, R. A., AND J. R. DIXON. 1976. A re-evaluation of the Sceloporus scalaris group (Sauria: Iguanidae). Southwest. Nat. 20:523-536.
    • (1976) Southwest. Nat. , vol.20 , pp. 523-536
    • Thomas, R.A.1    Dixon, J.R.2
  • 55
    • 0030208308 scopus 로고    scopus 로고
    • Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania)
    • TITUS, T. A., AND D. R. FROST. 1996. Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania). Mol. Phylogenet. Evol. 6:49-62.
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 49-62
    • Titus, T.A.1    Frost, D.R.2
  • 56
    • 0028878618 scopus 로고
    • Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
    • WHEELER, W. C. 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44:321-331.
    • (1995) Syst. Biol. , vol.44 , pp. 321-331
    • Wheeler, W.C.1
  • 57
    • 11944270728 scopus 로고
    • Polymorphic characters in phylogenetic systematics
    • WIENS, J. J. 1995. Polymorphic characters in phylogenetic systematics. Syst. Biol. 44:482-500.
    • (1995) Syst. Biol. , vol.44 , pp. 482-500
    • Wiens, J.J.1
  • 58
    • 0011030413 scopus 로고    scopus 로고
    • Accuracy of parsimony analysis using morphological data: A reappraisal
    • WIENS, J. J., AND D. M. HILLIS. 1996. Accuracy of parsimony analysis using morphological data: A reappraisal. Syst. Bot. 21:237-243.
    • (1996) Syst. Bot. , vol.21 , pp. 237-243
    • Wiens, J.J.1    Hillis, D.M.2
  • 59
    • 0345908689 scopus 로고    scopus 로고
    • Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence
    • WIENS, J. J., AND T. W. REEDER. 1997. Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence. Herpetol. Monogr. 11:1-101.
    • (1997) Herpetol. Monogr. , vol.11 , pp. 1-101
    • Wiens, J.J.1    Reeder, T.W.2
  • 60
    • 0031484624 scopus 로고    scopus 로고
    • Accuracy of phylogenetic analysis including and excluding polymorphic characters
    • WIENS, J. J., AND M. R. SERVEDIO. 1997. Accuracy of phylogenetic analysis including and excluding polymorphic characters. Syst. Biol. 46:332-345.
    • (1997) Syst. Biol. , vol.46 , pp. 332-345
    • Wiens, J.J.1    Servedio, M.R.2
  • 61
    • 0032095587 scopus 로고    scopus 로고
    • Phylogenetic analysis and intraspecific variation: Performance of parsimony, distance, and likelihood methods
    • WIENS, J. J., AND M. R. SERVEDIO. 1998. Phylogenetic analysis and intraspecific variation: Performance of parsimony, distance, and likelihood methods. Syst. Biol. 47:228-253.
    • (1998) Syst. Biol. , vol.47 , pp. 228-253
    • Wiens, J.J.1    Servedio, M.R.2
  • 63
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • WRIGHT, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.