Conflicting phylogenetic patterns caused by molecular mechanisms in mitochondrial DNA sequences

Systematic Biology

Volumn 47, Issue 4, 1998, Pages 696-701

  Broughton, Richard E ^a,b   Naylor, Gavin J P ^a,c   Dowling, Thomas E ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

^b Department of Molecular Biology and Genetics   (United States)

^c IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0032225750     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/106351598260671     Document Type: Review

References (21)

1. BROUGHTON, R. E., AND T. E. DOWLING. 1994. Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera. Genetics 138:179-190.
2. BROUGHTON, R. E., AND T. E. DOWLING. 1997. Evolutionary dynamics of tandem repeats in the mitochondrial DNA control region of the minnow Cyprinella spiloptera. Mol. Biol. Evol. 14:1187-1196.
3. BROWN, W. M. 1985. The mitochondrial genome of animals. Pages 95-130 in Molecular evolutionary genetics (R. Macintyre, ed.). Plenum, New York.
4. BUROKER, N. E., J. R. BROWN, T. A. GILBERT, P. J. O'HARA, A. T. BECKENBACH, W. K. THOMAS, AND M. J. SMITH. 1990. Length heteroplasmy of sturgeon mitochondrial DNA; an illegitimate elongation model. Genetics 124:157-163.
5. CUNNINGHAM, C. W., K. JENG, J. HUSTI, M. BADGETT, I. J. MOLINEUX, D. M. HILLIS, AND J. J. BULL. 1997. Parallel molecular evolution of deletions and non-sense mutation in bacteriophage T7. Mol. Biol. Evol. 14:113-116.
6. FARRIS, J. S. 1969. A successive approximations approach to character weighting. Syst. Zool. 18:374-385.
7. FARRIS, J. S. 1983. The logical basis of phylogenetic analysis. Pages 7-36 in Advances in cladistics, vol. 2 (N. Platnick and V. Funk, eds.). Columbia Univ. Press, New York.
8. FITCH, W. M. 1970. Distinguishing homologous from analogous proteins. Syst. Zool. 19:99-113.
9. GOLOBOFF, P. A. 1993. Estimating character weights during tree search. Cladistics 9:83-91.
10. KLUGE, A. G., AND J. S. FARRIS. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.
11. KRICKER, M. C., J. W. DRAKE, AND M. RADMAN. 1992. Duplication-targeted DNA methylation and mutagenesis in the evolution of eukaryotic chromosomes. Proc. Natl. Acad. Sci. USA 89:1075-1079.
12. MEACHAM, C. A., AND G. F. ESTABROOK. 1985. Compatibility methods in systematics. Annu. Rev. Ecol. Syst. 16:431-446.
13. MIYAMOTO, M. M., AND J. CRACRAFT. 1991. Phylogenetic inference, DNA sequence analysis, and the future of molecular systematics. Pages 3-17 in Phylogenetic analysis of DNA sequences (M. Miyamoto and J. Cracraft, eds.). Oxford Univ. Press, New York.
14. MORITZ, C., T. E. DOWLING, AND W. M. BROWN. 1987. Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18:269-292.
15. PENNY, D., AND M. HENDY. 1986. Estimating the reliability of evolutionary trees. Mol. Biol. Evol. 3:403-417.
16. RAND, D. M. 1993. Endotherms, ectotherms, and mitochondrial genome-size variation. J. Mol. Evol. 37:281-295.
17. SANDERSON, M. J., AND J. J. DOYLE. 1992. Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy, and confidence. Syst. Biol. 41:4-17.
18. SELKER, E. U. 1990. Premeiotic instability of repeated sequences in Neurospora crassa. Annu. Rev. Genet. 24:570-613.
19. STANTON, D. J., L. L. DAHLER, C. MORITZ, AND W. M. BROWN. 1994. Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA. Genetics 137:233-241.
20. SWOFFORD, D. L. 1993. PAUP: Phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign.
21. ZUCKERKANDL, E., J. DERANCOURT, AND H. VOGEL. 1971. Mutational trends and random processes in the evolution of informational macromolecules. J. Mol. Biol. 59:473-490.