Evaluating alterations of genetic diversity in sunfish populations exposed to contaminants using RAPD assay

Aquatic Toxicology

Volumn 43, Issue 2-3, 1998, Pages 163-178

  Nadig, Susan G ^a,b   Lee, K L ^a   Adams, S M ^a  

^a OAK RIDGE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF ALASKA ANCHORAGE   (United States)

Author keywords

Contaminants; Fish populations; Genetic diversity; RAPD assay

Indexed keywords

BIOLOGICAL MARKER; DNA FRAGMENT;

ASSESSMENT METHOD; BIOMARKER; ENVIRONMENTAL STRESS; GENETIC VARIATION; METHODOLOGY; POLYMERASE CHAIN REACTION;

ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; FISH; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; MARINE ENVIRONMENT; MONITORING; NONHUMAN; POLLUTION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TECHNIQUE;

LEPOMIS AURITUS;

EID: 0032192196     PISSN: 0166445X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-445X(98)00049-6     Document Type: Article

References (58)

1. Adams S.M., Ryon M.G. Comparison of health assessment approaches for evaluating the effects of contaminant-related stress on fish populations. J. Aquat. Ecosystem Health. 3:1994;15-25.
2. Adams S.M., Crumby W.D., Greeley M.S. Jr., Ryon M.G., Schiling E.M. Relationships between physiological and fish population responses in a contaminated stream. Environ. Toxicol. Chem. 11:1992;1549-1557.
3. Baker R., Lavie B., Nevo E. Natural selection for resistance to mercury pollution. Experientia. 41:1985;697-699.
4. Benton M.J., Guttman S.I. Allozyme genotype and differential resistance to mercury pollution in the caddisfly, Nectopsyche albida. II. Multilocus genotypes. Can. J. Fish. Aquat. Sci. 49:1992;147-149.
5. Berg D.E., Akopyants N.S., Kersulyte D. Fingerprinting microbial genomes using the RAPD or AP-PCR method. Methods Mol. Cell. Biol. 5:1994;13-24.
6. Bickham J.W., Smolen M.J. Sometic and heritable effects of environmental genotoxins and emergence of evolutionary toxicology. Environ. Health Perspect. 102(Suppl. 12):1994;25-28.
7. Campbell P.M., Devlin R.H. Expression of CYP1A1 in livers and gonads of pacific salmon: quantification of mRNA levels by RT-cPCR. Aquat. Toxicol. 34:1996;47-69.
8. Chagnon N.L., Guttman S.I. Differential survivorship of allozyme genotypes in mosquitofish populations exposed to copper and cadmium. Environ. Toxicol. Chem. 8:1989;319-326.
9. Codina J.C., Perez-Torrente C., Perez-Garcia A., Cazorla F.M., de Vicente A. Comparison of microbial tests for the detection of heavy metal genotoxicity. Arch. Environ. Contam. Toxicol. 29:1995;260-265.
10. Culvin-Aralar M.L.A., Aralar E.V. Resistance to a heavy metal mixture in Oreochromis niloticus progenies from parents chronically exposed to the same metals. Chemosphere. 30:1995;953-963.
11. Demeeus T., Michalakis Y., Renaud F., Olivier I. Polymorphism in heterogeneous environments, evolution of habitat selection and sympatric speciation: soft and hard selection models. Evolution. Ecol. 7:1993;175-198.
12. Department of Energy, 1996. Mercury abatement report on the U.S. Department of Energy's Oak Ridge Y-12 plant for fiscal year 1996. DOE Y/ER-277. Oak Ridge Y-12 Plant, Oak Ridge, TN.
13. Diamond S.A., Newman M.C., Mulvey M., Dixon P.M., Martison D. Allozyme genotype and time to death of mosquitofish, Gambusia affinis (Baird and Girard), during acute exposure to inorganic mercury. Environ. Toxicol. Chem. 8:1989;613-622.
14. Dinesh K.R., Chan W.K., Lim T.M., Phan V.P.E. RAPD markers in fishes: an evaluation of resolution and reproducibility. Asia Pac. J. Mol. Biol. Biotechnol. 3:1995;112-118.
15. Felenstein, J., 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Produced and distributed by author. Department of Genetics, University of Washington, Seattle.
16. Fore S.A., Guttman S.I., Bailer A.J., Altfater D.J., Counts B.V. Exploratory analysis of population genetic assessment as a water quality indicator. Ecotoxicol. Environ. Saf. 30:1995;36-46.
17. Gatz A.J., Adams S.M. Patterns of movement of centrarchids in two warmwater streams in eastern Tennessee. Ecol. Freshwater Fish. 3:1994;35-48.
18. Gillespie R.B., Guttman S.I. Effects of contaminants on the frequencies of allozymes in populations of the central stoneroller. Environ. Toxicol. Chem. 8:1989;309-317.
19. Hadrys H., Balick M., Schierwater B. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1:1992;55-63.
20. Hartl, D.L., 1988. A Primer of Population Genetics, 2nd edn. Sinauer Associates, Sunderland, MA, pp. 49-134.
21. Hinzman, R.L. (Ed), 1993. Second report on the Oak Ridge Y-12 plant biological monitoring and abatement program for East Fork Poplar Creek. Y/TS-888 Report. Oak Ridge Y-12 Plant, Oak Ridge, TN.
22. Jimenez, B.D., Oikari, A., Adams, S.M., Hinton, D.E., McCarthy, J.F., 1990. Hepatic enzymes as biomarkers: interpreting the effects of environmental, physiological and toxicological variables. In: McCarthy, J.F., Shugart, L.R. (Eds.), Biomarkers of Environmental Contamination. Lewis, Boca Raton, FL, pp. 123-142.
23. Kambhampati S., Black W.C., Rai K.S. RAPD-PCR for identification and differentiation of mosquito species and populations: techniques and statistical analysis. J. Med. Entomol. 29:1992;939-945.
24. Kopp R.L., Wissing T.E., Guttman S.I. Genetic indicators of environmental tolerance among fish populations exposed to acid deposition. Biochem. Syst. Ecol. 22:1994;459-475.
25. Leonard A., Jacquet P., Lauwerys R.R. Mutagenicity and teratogenicity of mercury compounds. Mutat. Res. 114:1983;1-18.
26. Lynch M. The similarity index and DNA fingerprinting. Mol. Biol. Evol. 7:1990;478-484.
27. Maniatis, T., Fritsch, E.F., Sambrook, J., 1982. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 280-281.
28. McDonald S.J., Willett K.L., Thomsen J., Beatty K.B., Connor K., Narasimhan R.T., Erickson C.M., Safe S.H. Sublethal detoxification responses to contaminant exposure associated with offshore production platforms. Can. J. Fish. Aquat. Sci. 53:1996;2606-2617.
29. McMahon G., Huber L.J., Moore M., Steggeman J.J., Wogan G.N. Mutations in c-Ki-ras oncogenes in diseased livers of winter flounder from Boston Harbor. Proc. Natl. Acad. Sci. USA. 87:1990;841-845.
30. Murdoch M.H., Herbert P.D.N. Mitochondrial DNA diversity of brown bullhead from contaminated and relatively pristine sites in the Great Lakes. Environ. Contam. Toxicol. 13:1994;1281-1289.
31. Naish K.A., Warren M., Bardakci F., Skibinski D.O.F., Carvalho G.R., Mair G.C. Multilocus DNA fingerprinting and RAPD reveal similar genetic relationship between strains of Oreochromis niloticus (Pisces: Cichlidae). Mol. Ecol. 4:1995;271-274.
32. Nei, M., 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
33. Nei M., Maruyama T., Chakraborty R. The bottleneck effect and genetic variability in populations. Evolution. 29:1975;1-10.
34. Nevo E., Pearl T., Beiles A., Wool D. Mercury selection of allozyme genotypes in shrimps. Experientia. 37:1981;1152-1154.
35. Nevo E., Ben-Schlomo R., Lavie B. Mercury selection of allozymes in marine organisms: prediction and verification in nature. Proc. Natl. Acad. Sci. USA. 81:1984;1258-1259.
36. Nevo E., Noy R., Lavie B., Beiles A., Muchtar S. Genetic diversity and resistance to marine pollution. Biol. J. Linn. Soc. 29:1986;139-144.
37. Peterson M.J., Southworth G.R., Crumby W.D. Monitoring mercury in fish in a stream system receiving multiple industrial inputs. Environ. Monitor. Assess. 40:1996;91-105.
38. Rotchell J.M., Stagg R.M., Craft J.A. Chemically-induced genetic damage in fish-isolation and characterization of the dab (Limanda Limanda) ras gene. Mar. Pollut. Bull. 31:1995;457-459.
39. Roy N.K., Kreamer G.L., Konkle B., Grunwald C., Wirgin I. Charaterization and prevalence of a polymorphism in the 3′ untranslated region of cytochrome P4501A1 in cancer-prone Atlantic tomcod. Arch. Biochem. Biophys. 322:1995;204-213.
40. Saitou N., Nei M. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
41. Schlenk D., Chelius M., Wolford L., Khan S., Chan K.M. Characterization of hepatic metallothionein expression in channel catfish (Ictalurus punctatus) by reverse-transcriptase polymerase chain reaction. Biomarkers. 2:1997;161-167.
42. Schofield C.L., Driscoll C.T. Fish species distribution in relation to water quality gradients in the North Branch of the Moose River Basin. Biogeochemistry. 3:1987;63-85.
43. Shugart, L.R., Bickman, J., Jackim, G., McMahon, G., Ridley, W., Stein, J., Steinhart, S., 1992. DNA alterations. In: Hugget, R.J., Kimerle, R.A., Mehrie Jr., P.M., Bergman, H.L. (Eds.), Biomarkers: Biochemical, Physiological, and Histological Markers of Anthropogenic Stress. Lewis, Boca Raton, FL, pp. 125-153.
44. Smith M.H., Smith M.W., Scott S.C., Lice E.H., Jones J.C. Rapid evolution in a post-thermal environment. Copeia. 1983:1983;193-197.
45. Southworth G.R., Turner R.R., Petterson M.J., Bogle M.A. Form of mercury in stream fish exposed to high concentrations of dissolved inorganic mercury. Chemosphere. 30:1995;779-787.
46. Strittholt, J.R., Guttman, S.I., Wissing, T.E., 1988. Low levels of genetic variability of yellow perch (Perca flavescens) in Lake Erie and selected impoundments. In: Downhower, J.F. (Ed.), The Biogeography of the Island Region of Western Lake Erie. Ohio University Press, Columbus, pp. 246-257.
47. Suter, G.W., 1990. Use biomarkers in ecological risk assessment. In: McCarthy, J.F., Shugart, L.R. (Eds.), Biomarkers of Environmental Contamination. Lewis, Boca Raton, FL, pp. 419-428.
48. Talmage S.S., Walton B. Food chain transfer and potential renal toxicity of mercury to small mammals at a contaminated terrestrial field site. Ecotoxicology. 2:1993;243-256.
49. Theodorakis C.W., Shugart L.R. Genetic ecotoxicology II: population genetic structure in mosquitofish exposed in situ to radionuclids. Ecotoxicology. 6:1997;335-354.
50. Theodorakis C.W., Blaylock B.G., Shugart L.R. Genetic ecotoxicology I: DNA integrity and reproduction in mosquitofish exposed in situ to radionuclides. Ecotoxicology. 5:1996;1-14.
51. Thorpe J.E., Koonce J.F., Borgeson D., Henderson B., Lamsa A., Maitland P.S., Ross M.A., Simon R.C., Walters C. Assessing and managing man's impact on fish genetic resources. Can. J. Fish. Aquat. Sci. 38:1981;1899-1905.
52. Trabalka J.R., Allen C.P. Aspects of fitness of mosquitofish (Gambusia affinis) exposed to chronic low-level environmental radiation. Radiat. Res. 70:1977;198-211.
53. Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:1990;7213-7218.
54. Willett K.L., McDonald S.J., Stienberg M.A., Beatty K.B., Kennicutt M.C., Safe S.H. Biomarker sensitivity of polynuclear aromatic hydrocarbon contamination in two marine fish species collected in Galveston Bay. Texas Environ. Toxicol. Chem. 16:1997;1472-1479.
55. Williams J.G., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:1990;6531-6535.
56. Wirgin I., D'anmore M., Grunwald C., Goldman A., Garte S.J. Genetic diversity at an oncogene locus and in mitochondrial DNA between populations of cancer prone Atlantic tomcod. Biochem. Genet. 28:1990;459-475.
57. Wirgin I., Kreamer G.L., Garte S.J. Genetic polymorphism of cytochrome P-4501A in cancer-prone Hudson River tomcod. Aquat. Toxicol. 19:1991;205-214.
58. Wogan B.A., Gorelick N.J. Chemical and biochemical dosimetry to exposure to genotoxic chemicals. Environ. Health Perspect. 62:1985;5-18.