-
1
-
-
0016022523
-
Hydration of proteins and polypeptides
-
Kuntz, I.D., Jr., Kauzmann, W. Hydration of proteins and polypeptides. Adv. Protein Chem. 28:239-345, 1974.
-
(1974)
Adv. Protein Chem.
, vol.28
, pp. 239-345
-
-
Kuntz Jr., I.D.1
Kauzmann, W.2
-
2
-
-
0019075326
-
Solvent effects and polar interactions in the structural stability and dynamics of globular proteins
-
Finney, J.L., Gellaty, B.J., Golton, I.C., Good Fellow, J.M. Solvent effects and polar interactions in the structural stability and dynamics of globular proteins. Biophys. J. 32:17-33, 1980.
-
(1980)
Biophys. J.
, vol.32
, pp. 17-33
-
-
Finney, J.L.1
Gellaty, B.J.2
Golton, I.C.3
Good Fellow, J.M.4
-
4
-
-
0002888590
-
Water and globular proteins
-
Rupley, J.A., Gratton, E., Careri, G. Water and globular proteins. Trends Bio. Sci. 8:18-22, 1983.
-
(1983)
Trends Bio. Sci.
, vol.8
, pp. 18-22
-
-
Rupley, J.A.1
Gratton, E.2
Careri, G.3
-
5
-
-
0023061930
-
Structure and dynamics of water surrounding biomolecules
-
Saenger, W. Structure and dynamics of water surrounding biomolecules. Ann. Rev. Biophys Chem. 16:93-114, 1987.
-
(1987)
Ann. Rev. Biophys Chem.
, vol.16
, pp. 93-114
-
-
Saenger, W.1
-
6
-
-
0024413264
-
Water-inserted alpha-helical segments implicate reverse turns as folding intermediates
-
Sundaralingam, M., Shekarudu, Y.C. Water-inserted alpha-helical segments implicate reverse turns as folding intermediates. Science 244:1333-1337, 1989.
-
(1989)
Science
, vol.244
, pp. 1333-1337
-
-
Sundaralingam, M.1
Shekarudu, Y.C.2
-
7
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K.A. Dominant forces in protein folding. Biochemistry 29:7133-7155, 1990.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
10
-
-
0025896727
-
Water-protein interactions: Theory and experiment
-
Teeter, M.M. Water-protein interactions: Theory and experiment. Annu. Rev. Biophysics. Chem. 20:577-600, 1991.
-
(1991)
Annu. Rev. Biophysics. Chem.
, vol.20
, pp. 577-600
-
-
Teeter, M.M.1
-
13
-
-
0029450365
-
Hydration in drug design. I. Multiple hydrogen-bonding features of water molecules in mediating protein-ligand interactions
-
Poornima, C.S., Dean, P.M. Hydration in drug design. I. Multiple hydrogen-bonding features of water molecules in mediating protein-ligand interactions. J. Comp.-aided Mol. Design 6:500-512, 1985.
-
(1985)
J. Comp.-aided Mol. Design
, vol.6
, pp. 500-512
-
-
Poornima, C.S.1
Dean, P.M.2
-
14
-
-
0021095481
-
X-ray studies of water in crystals of lysozyme
-
Blake, C.C.F., Pulford, W.C.A., Artymiuk, P.J. X-ray studies of water in crystals of lysozyme. J. Mol. Biol. 167:693-723, 1983.
-
(1983)
J. Mol. Biol.
, vol.167
, pp. 693-723
-
-
Blake, C.C.F.1
Pulford, W.C.A.2
Artymiuk, P.J.3
-
15
-
-
0001554681
-
Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin
-
Teeter, M.M. Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin. Proc. Natl. Acad. Sci. U.S.A. 81:6014-6018, 1984.
-
(1984)
Proc. Natl. Acad. Sci. U.S.A.
, vol.81
, pp. 6014-6018
-
-
Teeter, M.M.1
-
16
-
-
0022485951
-
Determination of water structure around biomolecules using X-ray and neutron diffraction methods
-
Savage, H., Wlodawer, A. Determination of water structure around biomolecules using X-ray and neutron diffraction methods. Methods Enzymol. 127:162-183, 1986.
-
(1986)
Methods Enzymol.
, vol.127
, pp. 162-183
-
-
Savage, H.1
Wlodawer, A.2
-
17
-
-
0024280106
-
The structure of 2Zn pig insulin crystals at 1.5 Å resolution
-
Baker, E.N., Blundell, T.L., Cutfield, J.F., et al. The structure of 2Zn pig insulin crystals at 1.5 Å resolution. Phil. Trans. Roy. Soc. London 319:369-456, 1988.
-
(1988)
Phil. Trans. Roy. Soc. London
, vol.319
, pp. 369-456
-
-
Baker, E.N.1
Blundell, T.L.2
Cutfield, J.F.3
-
18
-
-
0025162691
-
Crystal structure of low humidity tetragonal lysozyme at 2.1-Å resolution
-
Kodandapani, R., Suresh, G.G., Vijayan, M. Crystal structure of low humidity tetragonal lysozyme at 2.1-Å resolution. J. Biol. Chem. 265:16126-16131, 1990.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 16126-16131
-
-
Kodandapani, R.1
Suresh, G.G.2
Vijayan, M.3
-
19
-
-
0001468916
-
Rigid and flexible regions in lysozyme and the invariant features in its hydration shell
-
Madhusudan, Vijayan, M. Rigid and flexible regions in lysozyme and the invariant features in its hydration shell. Curr. Sci. 60:165-170, 1991.
-
(1991)
Curr. Sci.
, vol.60
, pp. 165-170
-
-
Madhusudan1
Vijayan, M.2
-
20
-
-
0025727187
-
Structurally conserved water molecules in ribonuclease T1
-
Malin, R., Zielenkiewicz, P., Saenger, W. Structurally conserved water molecules in ribonuclease T1. J. Biol. Chem. 266:4848-4852, 1993.
-
(1993)
J. Biol. Chem.
, vol.266
, pp. 4848-4852
-
-
Malin, R.1
Zielenkiewicz, P.2
Saenger, W.3
-
21
-
-
0001308823
-
Protein hydration and water structure: X-ray analysis of a closely packed protein crystal with very low solvent content
-
Madhusudan, Kodandapani, R., Vijayan, M. Protein hydration and water structure: X-ray analysis of a closely packed protein crystal with very low solvent content. Acta Cryst. D49:234-245, 1993.
-
(1993)
Acta Cryst.
, vol.D49
, pp. 234-245
-
-
Madhusudan1
Kodandapani, R.2
Vijayan, M.3
-
22
-
-
0028890779
-
Water-dependent domain motion and flexibility in ribonuclease a and the invariant features in its hydration shell: An X-ray study of two low-humidity-crystal forms of the enzyme
-
Radha Kishan, K.V, Chandra, N.R., Sudarsanakumar, C., Suguna, K., Vijayan, M. Water-dependent domain motion and flexibility in ribonuclease A and the invariant features in its hydration shell: An X-ray study of two low-humidity-crystal forms of the enzyme. Acta Cryst. D51:703-710, 1995.
-
(1995)
Acta Cryst.
, vol.D51
, pp. 703-710
-
-
Radha Kishan, K.V.1
Chandra, N.R.2
Sudarsanakumar, C.3
Suguna, K.4
Vijayan, M.5
-
23
-
-
0029421613
-
Hydration in protein crystallography
-
Schoenborn, B.P., Garcia, A., Knott, R. Hydration in protein crystallography. Progs. Biophys. Mol. Biol. 64:105-119, 1995.
-
(1995)
Progs. Biophys. Mol. Biol.
, vol.64
, pp. 105-119
-
-
Schoenborn, B.P.1
Garcia, A.2
Knott, R.3
-
25
-
-
0026326956
-
Protein hydration in solution
-
Otting, G., Liepinsh, E., Wuthrich, K. Protein hydration in solution. Science 254:974-980, 1991.
-
(1991)
Science
, vol.254
, pp. 974-980
-
-
Otting, G.1
Liepinsh, E.2
Wuthrich, K.3
-
26
-
-
0027977445
-
NMR studies of protein hydration
-
Belton, P.S. NMR studies of protein hydration. Prog. Biophys. Mol. Biol. 61:61-79, 1994.
-
(1994)
Prog. Biophys. Mol. Biol.
, vol.61
, pp. 61-79
-
-
Belton, P.S.1
-
27
-
-
0018793812
-
Crystallographic studies of the dynamic properties of lysozyme
-
Arytymiuk, P.J., Blake, C.C.F., Grace, B.E.P., Oatley, S.J., Phillips, D.C., Sternberg, M.J.E. Crystallographic studies of the dynamic properties of lysozyme. Nature 280:563-568, 1979.
-
(1979)
Nature
, vol.280
, pp. 563-568
-
-
Arytymiuk, P.J.1
Blake, C.C.F.2
Grace, B.E.P.3
Oatley, S.J.4
Phillips, D.C.5
Sternberg, M.J.E.6
-
28
-
-
51249183001
-
Structural mobility and transformations in globular proteins
-
Vijayan, M., Salunke, D.M. Structural mobility and transformations in globular proteins. J. Bio. Sci. 6:357-377, 1984.
-
(1984)
J. Bio. Sci.
, vol.6
, pp. 357-377
-
-
Vijayan, M.1
Salunke, D.M.2
-
29
-
-
0021902413
-
Mapping protein dynamics by X-ray diffraction
-
Ringe, D., Petsko, G.A. Mapping protein dynamics by X-ray diffraction. Progs. Biophys. Mol. Biol. 45:197-235, 1985.
-
(1985)
Progs. Biophys. Mol. Biol.
, vol.45
, pp. 197-235
-
-
Ringe, D.1
Petsko, G.A.2
-
31
-
-
0027750821
-
Elasticity of globular proteins: The relation between mechanics, thermodynamics and mobility
-
Morozov, V.N., Morozova, T.Y. Elasticity of globular proteins: The relation between mechanics, thermodynamics and mobility. J. Biomol. Struct. Dyn. 11:459-481, 1993.
-
(1993)
J. Biomol. Struct. Dyn.
, vol.11
, pp. 459-481
-
-
Morozov, V.N.1
Morozova, T.Y.2
-
32
-
-
0030485289
-
An X-ray analysis of native monoclinic lysozyme: A case study on the reliability of refined protein structures and a comparison with the low-humidity form in relation to mobility and enzyme action
-
Nagendra, H.G., Sudarsanakumar, C., Vijayan, M. An X-ray analysis of native monoclinic lysozyme: A case study on the reliability of refined protein structures and a comparison with the low-humidity form in relation to mobility and enzyme action. Acta Cryst. D52:1067-1074, 1996.
-
(1996)
Acta Cryst.
, vol.D52
, pp. 1067-1074
-
-
Nagendra, H.G.1
Sudarsanakumar, C.2
Vijayan, M.3
-
33
-
-
0005677066
-
Water-mediated structural transformations in a new crystal form of ribonuclease a and tetragonal lysozyme
-
Salunke, D.M., Veerapandian, B., Vijayan, M. Water-mediated structural transformations in a new crystal form of ribonuclease A and tetragonal lysozyme. Curr. Sci. 53:231-235, 1984.
-
(1984)
Curr. Sci.
, vol.53
, pp. 231-235
-
-
Salunke, D.M.1
Veerapandian, B.2
Vijayan, M.3
-
34
-
-
0000523981
-
Water-mediated transformations in protein crystals
-
Salunke, D.M., Veerapandian, B., Kodandapani, R., Vijayan, M. Water-mediated transformations in protein crystals. Acta Cryst. B41:431-436, 1985.
-
(1985)
Acta Cryst.
, vol.B41
, pp. 431-436
-
-
Salunke, D.M.1
Veerapandian, B.2
Kodandapani, R.3
Vijayan, M.4
-
35
-
-
0029106432
-
Characterization of lysozyme crystals with unusually low solvent content
-
Nagendra, H.G., Sudarsanakumar, C., Vijayan, M. Characterization of lysozyme crystals with unusually low solvent content. Acta Cryst. D51:390-392, 1995.
-
(1995)
Acta Cryst.
, vol.D51
, pp. 390-392
-
-
Nagendra, H.G.1
Sudarsanakumar, C.2
Vijayan, M.3
-
36
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B.W. Solvent content of protein crystals. J. Mol. Biol. 33:491-497, 1968.
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
37
-
-
0002268479
-
Preliminary X-ray data for some new crystalline forms of β-lactoglobulin and hen-egg-white lysozyme
-
Steinrauf, L.K. Preliminary X-ray data for some new crystalline forms of β-lactoglobulin and hen-egg-white lysozyme. Acta Cryst. 12:77-79, 1959.
-
(1959)
Acta Cryst.
, vol.12
, pp. 77-79
-
-
Steinrauf, L.K.1
-
38
-
-
0001124642
-
Saturated salt solutions for static control of relative humidity between 5° and 40°C
-
Rockland, L.B. Saturated salt solutions for static control of relative humidity between 5° and 40°C. Anal. Chem. 32:1375-1376, 1960.
-
(1960)
Anal. Chem.
, vol.32
, pp. 1375-1376
-
-
Rockland, L.B.1
-
40
-
-
84967851020
-
The use of an imaging proportional counter in macromolecular crystallography
-
Howard, A.J., Gilliland, G.L., Finzel, B.C., Poulos, T.L., Ohlendorf, D.H., Salemme, F.R. The use of an imaging proportional counter in macromolecular crystallography. J. Appl. Cryst. 20:383-387, 1987.
-
(1987)
J. Appl. Cryst.
, vol.20
, pp. 383-387
-
-
Howard, A.J.1
Gilliland, G.L.2
Finzel, B.C.3
Poulos, T.L.4
Ohlendorf, D.H.5
Salemme, F.R.6
-
41
-
-
3543046669
-
-
Madison: Nicolet Instrument Corporation
-
XENGEN manual. Madison: Nicolet Instrument Corporation, 1987.
-
(1987)
XENGEN Manual
-
-
-
42
-
-
84967852329
-
MERLOT, an integrated package of computer programs for the determination of crystal structures by molecular replacement
-
Fitzgerald, P.M.D. MERLOT, an integrated package of computer programs for the determination of crystal structures by molecular replacement. J. Appl. Cryst. 21:273-278, 1988.
-
(1988)
J. Appl. Cryst.
, vol.21
, pp. 273-278
-
-
Fitzgerald, P.M.D.1
-
43
-
-
0010418390
-
Experience with the application of Patterson search techniques
-
Proceedings of the Daresbury study weekend, SERC Daresbury laboratory, Warrington, England
-
Huber, R. Experience with the application of Patterson search techniques. In "Molecular Replacement." Proceedings of the Daresbury study weekend, SERC Daresbury laboratory, Warrington, England, 1985:58-61.
-
(1985)
Molecular Replacement
, pp. 58-61
-
-
Huber, R.1
-
44
-
-
84944812221
-
Extension of molecular replacement: A new search strategy based on Patterson correlation refinement
-
Brunger, A.T. Extension of molecular replacement: A new search strategy based on Patterson correlation refinement. Acta Cryst. A46:46-57, 1990.
-
(1990)
Acta Cryst.
, vol.A46
, pp. 46-57
-
-
Brunger, A.T.1
-
45
-
-
0002860357
-
Incorporation of stereochemical information into crystallographic refinement
-
Diamond, R., Ramaseshan, S., Venkatesan, K. (eds.). Bangalore: Indian Academy of Sciences
-
Hendrickson, W.A., Konnert, J.H. Incorporation of stereochemical information into crystallographic refinement. In: "Computing in Crystallography." Diamond, R., Ramaseshan, S., Venkatesan, K. (eds.). Bangalore: Indian Academy of Sciences, 1980:13.01-13.26.
-
(1980)
Computing in Crystallography
, pp. 1301-1326
-
-
Hendrickson, W.A.1
Konnert, J.H.2
-
46
-
-
0022333121
-
Stereochemically restrained refinement of protein structures
-
Hendrickson, W.A. Stereochemically restrained refinement of protein structures. Methods Enzymol. 115:252-270, 1985.
-
(1985)
Methods Enzymol.
, vol.115
, pp. 252-270
-
-
Hendrickson, W.A.1
-
47
-
-
0028103275
-
Computational Collaborative Project, Number 4
-
Computational Collaborative Project, Number 4. Acta Cryst. D50:760-763, 1994.
-
(1994)
Acta Cryst.
, vol.D50
, pp. 760-763
-
-
-
48
-
-
0000356656
-
A graphics model building and refinement system for macromolecules
-
Jones, T.A. A graphics model building and refinement system for macromolecules. J. Appl. Cryst. 11:268-272, 1978.
-
(1978)
J. Appl. Cryst.
, vol.11
, pp. 268-272
-
-
Jones, T.A.1
-
49
-
-
0023140814
-
Crystallographic R factor refinement by molecular dynamics
-
Brunger, A.T., John, K., Karplus, M. Crystallographic R factor refinement by molecular dynamics. Science 235:458-460, 1987.
-
(1987)
Science
, vol.235
, pp. 458-460
-
-
Brunger, A.T.1
John, K.2
Karplus, M.3
-
50
-
-
84901961522
-
Slow-cooling protocols for crystallographic refinement by simulated annealing
-
Brunger, A.T., Krukowski, A. Slow-cooling protocols for crystallographic refinement by simulated annealing. Acta Cryst. A46:585-593, 1990.
-
(1990)
Acta Cryst.
, vol.A46
, pp. 585-593
-
-
Brunger, A.T.1
Krukowski, A.2
-
51
-
-
0000246042
-
Simulated annealing in crystallography
-
Brunger, A.T. Simulated annealing in crystallography. Annu. Rev. Phys. Chem. 42:197-223, 1991.
-
(1991)
Annu. Rev. Phys. Chem.
, vol.42
, pp. 197-223
-
-
Brunger, A.T.1
-
52
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S., Thornton, J.M. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26:283-291, 1993.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
53
-
-
0014966180
-
IUPAC-IUB Commision on Biochemical Nomenclature
-
IUPAC-IUB Commision on Biochemical Nomenclature. J. Mol. Biol. 52:1-17, 1970.
-
(1970)
J. Mol. Biol.
, vol.52
, pp. 1-17
-
-
-
54
-
-
0009611115
-
On the Fourier refinemet of protein structures
-
Vijayan, M. On the Fourier refinemet of protein structures. Acta Cryst. A36:295-298, 1980.
-
(1980)
Acta Cryst.
, vol.A36
, pp. 295-298
-
-
Vijayan, M.1
-
55
-
-
3543019601
-
-
Machin, P.A., Campbell, J.W., Elder, M. (eds.). Daresbury: SERC
-
Dodson, G.G. In: "Refinement of Protein Structures. Proceedings of the Daresbury Weekend." Machin, P.A., Campbell, J.W., Elder, M. (eds.). Daresbury: SERC, 1981:95-98.
-
(1981)
Refinement of Protein Structures. Proceedings of the Daresbury Weekend
, pp. 95-98
-
-
Dodson, G.G.1
-
56
-
-
0021470578
-
OMITMAP: An electron density map suitable for the examination of errors in a macromolecular model
-
Bhat, T.N., Cohen, G.H. OMITMAP: An electron density map suitable for the examination of errors in a macromolecular model. J. Appl. Cryst. 17:244-248, 1984.
-
(1984)
J. Appl. Cryst.
, vol.17
, pp. 244-248
-
-
Bhat, T.N.1
Cohen, G.H.2
-
57
-
-
0020655246
-
Structural domains in proteins and their role in the dynamics of protein function
-
Janin, J., Wodak, S.J. Structural domains in proteins and their role in the dynamics of protein function. Prog. Biophys. Molec. Biol. 42:21-78, 1983.
-
(1983)
Prog. Biophys. Molec. Biol.
, vol.42
, pp. 21-78
-
-
Janin, J.1
Wodak, S.J.2
-
58
-
-
0017163950
-
The hinge-bending mode in lysozyme
-
McCammon, J.A., Gelin, B.R., Karplus, M., Wolynes, P.G. The hinge-bending mode in lysozyme. Nature 262:325-326, 1976.
-
(1976)
Nature
, vol.262
, pp. 325-326
-
-
McCammon, J.A.1
Gelin, B.R.2
Karplus, M.3
Wolynes, P.G.4
-
60
-
-
0027995683
-
Detection, delineation, measurement and display of cavities in macromolecular structures
-
Kleywegt, G.J., Jones, A. Detection, delineation, measurement and display of cavities in macromolecular structures. Acta Cryst. 050:178-185, 1994.
-
(1994)
Acta Cryst.
, vol.50
, pp. 178-185
-
-
Kleywegt, G.J.1
Jones, A.2
-
61
-
-
0026551529
-
Refinement of an enzyme complex with inhibitor bound at partial occupancy: Hen egg-white lysozyme and tri-N-acetylchitotriose at 1.75-Å resolution
-
Cheetam, J.C., Artymuik, P.J., Phillips, D.C. Refinement of an enzyme complex with inhibitor bound at partial occupancy: Hen egg-white lysozyme and tri-N-acetylchitotriose at 1.75-Å resolution. J. Mol. Biol. 224:613-628, 1992.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 613-628
-
-
Cheetam, J.C.1
Artymuik, P.J.2
Phillips, D.C.3
-
62
-
-
0028934071
-
Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity
-
Maenaka, K., Matsushima, M., Song, H., Sunada, P., Watanabe, K., Kumagai, I. Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity. J. Mol. Biol. 247:281-293, 1995.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 281-293
-
-
Maenaka, K.1
Matsushima, M.2
Song, H.3
Sunada, P.4
Watanabe, K.5
Kumagai, I.6
-
63
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, J.F., Williams, G.J.B., et al. The protein data bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, J.F.2
Williams, G.J.B.3
-
64
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24:946-950, 1991.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.1
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