Phylogeny of the genus Trichoderma based on sequence analysis of the internal transcribed spacer region 1 of the rDNA cluster

Fungal Genetics and Biology

Volumn 24, Issue 3, 1998, Pages 298-309

  Kindermann, Johanna ^a   El Ayouti, Yassin ^a,c   Samuels, Gary J ^b   Kubicek, Christian P ^a  

^a VIENNA UNIVERSITY OF TECHNOLOGY   (Austria)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c Zagazig University   (Egypt)

Author keywords

Hypocrea; Internal transcribed spacer; ITS1; Trichoderma

Indexed keywords

RIBOSOME DNA; SPACER DNA;

ARTICLE; DNA SEQUENCE; DNA TRANSCRIPTION; GENE CLUSTER; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; TRICHODERMA;

BASIDIOMYCOTA; HYPOCREA; HYPOCREA SEMIORBIS; LONGIBRACHIATUM; TRICHODERMA; TRICHODERMA ATROVIRIDE; TRICHODERMA CROCEUM; TRICHODERMA FASCICULATUM; TRICHODERMA FERTILE; TRICHODERMA HAMATUM; TRICHODERMA INHAMATUM; TRICHODERMA LONGIBRACHIATUM; TRICHODERMA LONGIPILE; TRICHODERMA OBLONGISPORUM; TRICHODERMA PILULIFERUM; TRICHODERMA PUBESCENS; TRICHODERMA SPIRALE; TRICHODERMA STRIGOSUM; TRICHODERMA VIRIDE;

EID: 0032144592     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1006/fgbi.1998.1049     Document Type: Article

References (50)

1. Anderson J. B., Stasovski E. Molecular phylogeny of Northern hemisphere species ofArmillaria. Mycologia. 84:1992;505-516.
2. Arisan-Atac I., Heidenreich E., Kubicek C. P. Random amplified polymorphic DNA fingerprinting identifies subgroups ofTrichoderma virideTrichoderma. FEMS Microbiol. Letts. 126:1995;249-256.
3. Bissett J. A revision of the genusTrichoderma.Longibrachiatum. Can. J. Bot. 62:1984;924-931.
4. Bissett J. A revision of the genusTrichoderma. Can. J. Bot. 69:1991a;2357-23725.
5. Bissett J. A revision of the genusTrichoderma.Pachybasium. Can. J. Bot. 69:1991b;2373-2417.
6. Bissett J. A revision of the genusTrichoderma.Longibrachiatum. Can. J. Bot. 69:1991c;2418-2420.
7. Bissett J. Trichoderma atroviride. Can. J. Bot. 70:1992;639-641.
8. Bowen J. K., Franicevic S. C., Crowhurst R. N., Templeton M. D., Stewart A. Differentiation of a specificTrichoderma. New Zealand J. Crop Horticult. Sci. 24:1996;207-217.
9. Bruns T. D., Fogel R., White T. J., Palmer J. D. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature. 339:1989;140-142.
10. Chet I. Trichoderma. Innovative Approaches to Plant Disease Control. 1987;Wiley, New York. p. 137-160.
11. Doi N., Doi Y. Notes ofTrichodermaTrichoderma. Bull. Natl. Sci. Mus. Ser. B (Botany). 5:1979;117-123.
12. Eveleigh D. E. Trichoderma. Demain A. L., Solomon N. Biology of Industrial Microorganisms. 1985;487-509 Benjamin/Cummings, London/Amsterdam/Sydney/Tokyo.
13. Felsenstein J. Confidence limits on phylogeneties: an approach using bootstrap. Evolution. 39:1985;783-791.
14. Felsenstein, J. 1991, PHYLIP-phylogenetic interference package, Computer programs distributed by Department of Genetics, University of Washington, Seattle, WA.
15. Fitch W. M., Margoliash E. Construction of phylogenetic trees. Science. 155:1967;279-284.
16. Fujimori F., Okuda T. Application of the random amplified polymorphic DNA using the polymerase chain reaction for efficient elimination of duplicate strains in microbial screening. I. Fungi. J. Antibiot. 47:1994;173-182.
17. Gams W., Meyer W. What exactly isTrichoderma harzianum. Mycologia. 1997.
18. Ghisalberti E. L., Sivasithamparam K. Antifungal antibiotics produced byTrichoderma. Soil Biol. Biochem. 23:1991;1011-1020.
19. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies on nucleotide sequences. J. Mol. Evol. 2:1980;87-90.
20. Kubicek C. P. The cellulase proteins ofTrichoderma reesei: Adv. Biochem. Engin. Biotechnol. 45:1992;1-27.
21. Kuhls K., Lieckfeldt E., Börner T. PCR-fingerprinting used for comparison ofex-typeTrichoderma. Microbiol. Res. 150:1995;1-9.
22. Kuhls K., Lieckfeldt E., Samuels G. J., Kovacs W., Meyer W., Petrini O., Gams W., Börner T., Kubicek C. P. Molecular evidence that the asexual industrial fungusTrichoderma reeseiHypocrea jecorina. Proc. Natl. Acad. Sci. USA. 93:1996;7755-7760.
23. Kuhls K., Lieckfeldt E., Samuels G. J., Meyer W., Kubicek C. P., Börner T. Revision ofTrichodermaLongibrachiatum. Mycologia. 89:1997;442-460.
24. Leuchtmann A., Samuels G. J., Petrini O. Isoenzyme subgroups inTrichodermaLongibrachiatum. Mycologia. 88:1996;384-394.
25. LoBuglio K. F., Pitt J. I., Taylor J. W. Phylogenetic analysis of two ribosomal DNA regions indicates multiple independent losses of a sexualTalaromycesPenicilliumBiverticillum. Mycologia. 85:1993;592-604.
26. Meyer R. J. Mitochondrial DNAs and plasmids as taxonomic characteristics inTrichoderma viride. Appl. Environ. Microbiol. 57:1991;2269-2276.
27. Meyer W., Morawetz R., Börner T., Kubicek C. P. The use of DNA-fingerprint analysis in the classification of some species of theTrichoderma. Curr. Genet. 21:1992;27-30.
28. Middendorf L. R., Bruce J. C., Bruce R. C., Eckles R. D., Grone D. L., Roemer S. C., Sloniker G. D., Steffens D. L., Sutter S. L., Brumbaugh J. A., Patonay G. Continuous, on-line DNA sequencing using a versatile infrared laser scanner/electrophoresis apparatus. Electrophoresis. 13:1992;487-494.
29. Muthumeenakshi S., Mills P. R., Brown A. E., Seaby D. A. Intraspecific molecular variation amongTrichoderma harzianum. Microbiol. (UK). 140:1994;769-777.
30. Muthumeenakshi S., Mills P. R. A global perspective on colonizing forms ofTrichoderma. Book of abstracts. 1995;USDA-ARS, Beltsville. p. 11.
31. Nei M., Li W. H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA. 76:1979;5269-5273.
32. Okuda T., Fujiwara A., Fujiwara M. Correlation between species of Trichoderma and production patterns of isonitril antibiotics. Agric. Biol. Chem. 46:1982;1811-1822.
33. Rehner S. A., Samuels G. J. Taxonomy and phylogeny ofGliocladium. Mycological Research. 98:1994;625-634.
34. Rifai M. A. A revision of the genusTrichoderma. Mycol. Pap. 116:1969;1-116.
35. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
36. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
37. Samuels G. J., Petrini O., Manguin S. Morphological and macromolecular characterization ofHypocrea schweinitziiTrichoderma. Mycologia. 86:1994;421-435.
38. Samuels G. J., Petrini O., Kuhls K., Lieckfeldt E., Kubicek C. P. TheHypocrea schweinitziiTrichodermaLongibrachiatum. Stud. Mycol. 1998.
39. Sherriff C., Whelan M. J., Arnold G. M., Lafai J.-F., Brygoo Y., Bailey J. A. Ribosomal DNA sequence analysis reveals new species groupings in the genusColletotrichum. Exp. Mycol. 18:1994;121-138.
40. Simmons E. G. Classification of some cellulase-producingTrichoderma. Bigelow H. E., Simmons E. G. 2nd International Mycological Congress. Abstracts. 1977;618 University of South Florida, Tampa.
41. Smith W. H. Forest occurrence ofTrichoderma. Ecotoxicol. Environ. Safety. 32:1995;179-183.
42. Stasz T. E., Nixon K., Harman G. E., Weeden N. F., Kuter G. A. Evaluation of phenetic species and phylogenetic relationships in the genusTrichoderma. Mycologia. 81:1989;391-403.
43. Swofford, D. L. Olsen, G. J. 1990, Phylogeny construction, Molecular Systematics, D. M. HillisC. Moritz, 411, 501, Sinauer, Sunderland, MA.
44. Thomas R. H., Schaffner W., Wolson A. C., Pääbö S. DNA phylogeny of the extinct marsupial wolf. Nature. 340:1989;465-467.
45. Turner D., Kovacs W., Kuhls K., Lieckfeldt E., Peter B., Arisan-Atac I., Strauss J., Samuels G. J., Börner T., Kubicek C. P. Biogeography and phenotypic variation inTrichodermaLongibrachiatumHypocrea. Mycol Res. 101:1997;449-459.
46. Turoczi G., Fekete C., Kerenyi Z., Nagy R., Pomazi A., Hornok L. Biological and molecular characterization of potential biocontrol strains ofTrichoderma. J. Basic Microbiol. 36:1996;63-72.
47. Veerkamp J., Gams W. Los Hongos de Colombia. VIII. Some new species of soil fungi from Colombia. Caldasia. 13:1983;709-717.
48. Waterman M. S. Multiple sequence alignment by consensus. Nucleic Acids Res. 14:1986;9095-9102.
49. White T. J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols. A Guide to Methods and Applications. 1990;315-322 Academic Press, San Diego.
50. Zimand G., Valinsky L., Elad Y., Chet I., Manulis S. Use of RAPD procedure for the identification ofTrichoderma. Mycol. Res. 98:1994;531-534.