The rationale and method for constructing internal control DNA used in pertussis polymerase chain reaction

Diagnostic Microbiology and Infectious Disease

Volumn 31, Issue 4, 1998, Pages 517-523

  Müller, Frank Michael C ^a   Schnitzler, Norbert ^b   Cloot, Oliver ^b   Kockelkorn, Peter ^b   Haase, Gerhard ^b   Li, Zhongming ^c  

^a UNIVERSITY HOSPITAL RWTH AACHEN   (Germany)

^b RWTH AACHEN UNIVERSITY   (Germany)

^c CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; BORDETELLA PARAPERTUSSIS; BORDETELLA PERTUSSIS; DIAGNOSTIC ACCURACY; DIAGNOSTIC VALUE; HUMAN; MAJOR CLINICAL STUDY; NONHUMAN; PERTUSSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

BORDETELLA PARAPERTUSSIS;

EID: 0032143953     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0732-8893(98)00043-1     Document Type: Article

References (47)

1. Bäckman A., Johansson B., Olcen P. Nested PCR optimized for detection of Bordetella pertussis in clinical nasopharyngeal samples. J Clin Microbiol. 32:1994;2544-2548.
2. Bej A.K., Mahbubani M.H., Miller R., DiCesare J.L., Haff L., Atlas R.M. Multiplex PCR amplification and immobilized capture probes for detection of bacterial pathogens and indicators in water. Mol Cell Probes. 4:1990;353-365.
3. Birkebaek N.H., Heron I., Skjodt K. Bordetella pertussis diagnosed by polymerase chain reaction. APMIS. 102:1994;291-294.
4. Brisson-Noel A., Aznar C., Chureau C., Nguyen S., Pierre C., Bartoli M., Bonete R., Pialoux G., Gicquel B., Garrigue G. Diagnosis of tuberculosis by DNA amplification in clinical practice evaluation. Lancet. 338:1991;364-366.
5. De Franchis R., Cross N.C.P., Foulkes N.S., Cox T.M. A potent inhibitor of Taq polymerase copurifies with human genomic DNA. Nucleic Acids Res. 16:1988;10355.
6. DeWit D., Wootton M., Allan B., Steyn L. Simple method for production of internal control DNA for Mycobacterium tuberculosis polymerase chain reaction assays. J Clin Microbiol. 31:1993;2204-2207.
7. Douglas E., Coole J.G., Parton R., McPheat W. Identification of Bordetella pertussis in nasopharyngeal swabs by PCR amplification of a region of the adenylate cyclase gene. J Med Microbiol. 38:1993;140-144.
8. Frankel G., Giron J.A., Valmassoi J., Schoolnik G.K. Multi-gene amplification: simultaneous detection of three virulence genes in diarrhoeal stool. Mol Microbiol. 3:1989;1729-1734.
9. Gerritsen M.J., Olyhoek T., Smits M.A., Bokhout B.A. Sample preparation method for polymerase chain reaction-based semiquantitative detection of Leptospira interrogans serovar hardjo subtype hardjobovis in bovine urine. J Clin Microbiol. 29:1991;2805-2808.
10. Glare E.M., Paton J.C., Premier R.R., Lawrence A.J., Nisbet I.T. Analysis of a repetitive DNA sequence from Bordetella pertussis and its application to the diagnosis of pertussis using the polymerase chain reaction. J Clin Microbiol. 28:1990;1982-1987.
11. Grimprel E., Bégué P., Anjak I., Betsov F., Guiso N. Comparison of polymerase chain reaction, culture and western immunoblot serology for diagnosis of Bordetella pertussis infection. J Clin Microbiol. 31:1993;2745-2750.
12. He Q., Mertsola J., Soini H., Skurnik M., Ruuskanen O., Viljanen M.K. Comparison of polymerase chain reaction with culture and enzyme immunoassay for diagnosis of pertussis. J Clin Microbiol. 31:1993;642-645.
13. He Q., Mertsola J., Soini H., Viljanen M.K. Sensitive and specific polymerase chain reaction assays for detection of Bordetella pertussis in nasopharyngeal specimens. J Pediatr. 124:1994;421-426.
14. Higuchi R. Simple and rapid preparation of samples for PCR. Erlich H.A. PCR Technology. 1989;31-38 Stockton Press.
15. Horton R.M., Cai Z., Ho S.N., Pease L.R. Gene splicing by overlap extension tailor-made genes using the polymerase chain reaction . Biotechniques. 8:1990;528-535.
16. Horton R.M., Hunt H.D., Ho S.N., Pullen F.K., Pease L.R. Engineering hybrid genes without the use of restriction enzymes gene splicing by overlap extension . Gene. 77:1989;61-68.
17. Houard S., Hackel C., Herzog A., Bollen A. Specific identification of Bordetella pertussis by the polymerase chain reaction. Res Microbiol. 140:1989;477-487.
18. Khan G., Kangro H.O., Heath R.B. Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA. J Clin Pathol. 44:1991;360-365.
19. Kowpk S., Higuchi R. Avoiding false positives with PCR. Nature. 339:1989;237-238.
20. Li Z.M., Hannah J.H., Stibitz S., Nguyen N.Y., Manclark C.R., Brennan M.J. Cloning and sequencing of the structural gene for the porin protein of Bordetella pertussis. Mol Microbiol. 5:1991;1649-1656.
21. Li Z.M., Jansen D.L., Finn T.M., Halperin S.A., Kasina A., O'Connor S.P., Aoyama T., Manclark C.R., Brennan M.J. Identification of Bordetella pertussis infection by shared-primer PCR. J Clin Microbiol. 32:1994;783-789.
22. Li Z.M., Bai G.H., Fordham von Reyn C., Marino P., Brennan M.J., Gine N., Morris S.L. Rapid detection of Mycobacterium avium in stool samples from AIDS patients by immunomagnetic PCR. J Clin Microbiol. 34:1996;1903-1907.
23. Lichtinghagen R., Diedrich-Glaubitz R., von Hörsten B. Identification of Bordetella pertussis in nasopharyngeal swabs using the polymerase chain reaction evaluation of detection methods . Eur J Clin Chem Clin Biochem. 32:1994;161-167.
24. Lichtinghagen R., Glaubitz R. A competitive polymerase chain reaction assay for reliable identification of Bordetella pertussis in nasopharyngeal swabs. Eur J Clin Chem Clin Biochem. 33:1995;87-93.
25. Longo M.L., Berninger M.S., Harley J.L. The use of uracil glycosylase to control carry-over contamination in polymerase chain reactions. Gene. 93:1990;125-128.
26. Luk J.M.C., Lindberg A.A. Rapid and sensitive detection of Salmonella (O:6,7) by immunomagnetic monoclonal antibody-based assays. J Immunol Methods. 137:1991;1-8.
27. Mastrantonio P., Stefanelli P., Giuliano M. polymerase chain reaction for the detection of Bordetella pertussis in clinical nasopharyngeal aspirates. J Med Microbiol. 44:1996;261-266.
28. Mazurek G.H., Reddy V., Murphy D., Ansari T. Detection of Mycobacterium tuberculosis in cerebrospinal fluid following immunomagnetic enrichment. J Clin Microbiol. 34:1996;450-453.
29. Meade B.D., Bollen A. Recommendations for use of the polymerase chain reaction in the diagnosis of Bordetella pertussis infections. J Med Microbiol. 41:1994;51-55.
30. Müller F.M.C., Li Z.M., Schmitt H.J., Brennan M.J. The detection of Bordetella pertussis in swab samples by polymerase chain reaction. Serodiagn Immunother Infect Dis. 6:1994;230-232.
31. Müller F.M.C., Hoppe J.E., Wirsing von König C.H. Laboratory diagnosis of pertussis: state of the art in 1997. J Clin Microbiol. 35:1997;2435-2443.
32. Olcen P., Bäckman A., Johansson B., Esbjorner E., Tornqvist E., Dygraves J., McPheat W.L. Amplification of DNA by the polymerase chain reaction for the efficient diagnosis of pertussis. Scand J Infect Dis. 24:1992;339-345.
33. Pallen M.J., Puckey L.H., Wren B.W. A rapid, simple method for detecting PCR failure. PCR Methods Appl. 2:1992;91-92.
34. Reizenstein E., Johansson B., Mardin L., Abens J., Möllby R., Hallander H.O. Diagnostic evaluation of polymerase chain reaction discriminative for Bordetella pertussis. B parapertussis, and B bronchiseptica. Diagn Microbiol Infect Dis. 17:1993;185-191.
35. Reizenstein E., Lindberg L., Möllby R., Hallander H.O. Validation of nested Bordetella PCR in pertussis vaccine trial. J Clin Microbiol. 34:1996;810-815.
36. Schläpfer G., Senn H.P., Berger M., Just M. Use of the polymerase chain reaction to detect Bordetella pertussis in patients with mild or atypical symptoms of infection. Eur J Clin Microbiol Infect Dis. 12:1993;10-14.
37. Schläpfer G., Cherry J.D., Heininger U., Überall M., Schmitt-Grohé S., Laussucq S., Just M., Stehr K. polymerase chain reaction identification of Bordetella pertussis infections in vaccinees and family members in a pertussis vaccine efficacy trial in Germany. Pediatr Infect Dis J. 14:1995;209-214.
38. Siebert P.D., Larrick J.W. PCR MIMICS competitive DNA fragments for use as internal standards in quantitative PCR . Biotechniques. 14:1993;244-249.
39. Skerve E., Rorvik L.M., Olsvik O. Detection of Listeria monocytogenes in foods by immunomagnetic separation. Appl Environ Microbiol. 56:1990;3478-3481.
40. Stark M., Reizenstein E., Uhlen M., Lundeberg J. Immunomagnetic separation and solid-phase detection of Bordetella pertussis. J Clin Microbiol. 34:1996;778-784.
41. Taranger J., Trollfors B., Lind L., Zackrisson G., Beling-Holmquist K. Environmental contamination leading to false-positive polymerase chain reaction for pertussis. Pediatr Infect Dis J. 13:1994;936-937.
42. Thiele D. The technique of polymerase chain reaction - a new diagnostic tool in microbiology and other scientific fields. Int J Med Microbiol. 273:1990;431-454.
43. van der Zee A., Agterbeerg C., Peeters M., Schellekens J., Rmooi F. polymerase chain reaction assay for pertussis simultaneous detection and discrimination of Bordetella pertussis and Bordetella parapertussis . J Clin Microbiol. 31:1993;2134-2140.
44. van der Zee A., Agterberg C., Peeters M., Mooi F., Schellekens J. A clinical validation of Bordetella pertussis and Bordetella parapertussis polymerase chain reaction comparison with culture and serology using samples from patients with suspected whooping cough from a highly immunized population . J Infect Dis. 174:1996;89-96.
45. Wadowsky R.M., Laus S., Libert T., States S.J., Ehrlich G.D. Inhibition of PCR-based assay for Bordetella pertussis by using calcium alginate fiber and aluminium shaft components of a nasopharyngeal swab. J Clin Microbiol. 32:1994;1054-1057.
46. Walsh P.S., Metzger D.A., Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques. 10:1991;506-513.
47. Wilde J., Eiden J., Yolken R. Removal of inhibitory substances from human fecal specimens for detection of group A rotaviruses by reverse transcriptase and polymerase chain reaction. J Clin Microbiol. 28:1990;1300-1307.