Analysis of genomic rearrangement and subsequent gene deletion of the attenuated Orf virus strain D1701

Virus Research

Volumn 56, Issue 1, 1998, Pages 53-67

  Cottone, Rosita ^a   Büttner, Mathias ^a   Bauer, Berthilde ^a   Henkel, Marco ^a   Hettich, Eduard ^a   Rziha, Hanns Joachim ^a  

^a FEDERAL RESEARCH INSTITUTE FOR ANIMAL HEALTH   (Germany)

Author keywords

Attenuated Orf virus D1701; Gene deletion; Genomic map; Parapoxvirus

Indexed keywords

ARTICLE; DNA SEQUENCE; GENE DELETION; GENE MAPPING; GENE REARRANGEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PARAPOXVIRUS; PRIORITY JOURNAL; VIRULENCE; VIRUS REPLICATION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; CATTLE; CELL LINE; CHROMOSOME MAPPING; DNA, VIRAL; GENE DELETION; GENES, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; ORF VIRUS; PARAPOXVIRUS; SEQUENCE HOMOLOGY; SHEEP; VACCINES, ATTENUATED; VIRAL VACCINES; VIRUS REPLICATION;

ORF VIRUS; OVIS ARIES; PARAPOXVIRUS; POXVIRIDAE;

EID: 0032128035     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(98)00056-2     Document Type: Article

References (58)

1. Archard L.C., Mackett M. Restriction endonuclease analysis of red cowpox virus and its white pock variant. J. Gen. Virol. 45:1979;51-63.
2. Archard L.C., Mackett M., Barnes D.E., Dumbell K.R. The genome structure of cowpox virus white pock variants. J. Gen. Virol. 65:1984;875-886.
3. Baroudy B.M., Venkatesan S., Moss B. Incompletely base-paired flip-flop terminal loops link the two DNA strands of the vaccinia virus genome into one interrupted polynucleotide chain. Cell. 28:1982;315-324.
4. Binns M.M., Tomley F.M., Campell J., Boursnell M.E. Comparison of a conserved region in fowlpox virus and vaccinia virus genomes and the translocation of the fowlpox thymidine kinase. J. Gen. Virol. 69:1988;1275-1283.
5. Bloom D.C., Edwards K.M., Hager C., Moyer R.W. Identification and characterization of two nonessential regions of the rabbitpox virus genome involved in virulence. J. Virol. 65:1991;1530-1542.
6. Buller R.M.L., Palumbo G.J. Poxvirus pathogenesis. Microbiol. Rev. 55:1991;80-122.
7. Chomczynski P., Sacchi N. Single step method of RNA-isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:1987;156-159.
8. Dallo S., Esteban M. Isolation and characterization of attenuated mutants of vaccinia virus. Virology. 159:1987;408-422.
9. Drillien R., Koehren F., Kirn A. Host range deletion mutant of vaccinia virus defective in human cells. Virology. 111:1981;488-499.
10. Drillien R., Spehner D., Villeval D., Lecocq J.-P. Similar genetic organization between a region of fowlpox virus DNA and the vaccinia virus HindIII fragment despite divergent location of the thymidine kinase gene. Virology. 160:1987;203-209.
11. Dumbell K.R., Archard L.C. Comparison of white pock (h) mutants of monkeypox virus with parental monkeypox and with variola-like viruses isolated from animals. Nature. 286:1980;29-32.
12. Esposito J.J., Obijesky J.F., Nakano J.H. Orthopoxvirus DNA: strain differentiation by electrophoresis of restriction endonuclease fragmented virion DNA. Virology. 89:1978;53-66.
13. Esposito J.J., Cabradilla C.D., Nakano J.H., Obijesky J.F. Intragenomic sequence transposition in monkeypox virus. Virology. 109:1981;231-243.
14. Fleming S.B., Fraser K.M., Mercer A.A., Robinson A.J. Vaccinia virus-like early transcriptional control sequences flank an early gene in orf virus. Gene. 97:1991;207-212.
15. Fleming S.B., Mercer A.A., Fraser K.M., Lyttle D.J., Robinson A.J. In vivo recognition of orf virus early transcriptional promoters in a vaccinia virus recombinant. Virology. 187:1992;464-471.
16. Fleming S.B., Blok J., Fraser K.M., Mercer A.A., Robinson A.J. Conservation of gene structure and arrangement between vaccinia virus and orf virus. Virology. 195:1993;175-184.
17. Fleming S.B., Lyttle D.J., Sullivan J.T., Mercer A.A., Robinson A.J. Genomic analysis of a transposition-deletion variant of orf virus reveals a 3.3 kbp region of non-essential DNA. J. Gen. Virol. 76:1995;2969-2978.
18. Fleming S.B., McCaughan C.A., rews A.E., Nash A.D., Mercer A.A. A homolog of interleukin-10 is encoded by the poxvirus orf virus. J. Virol. 71:1997;4857-4861.
19. Fraser K.M., Hill D.F., Mercer A.A., Robinson A.J. Sequence analysis of the inverted terminal repetition in the genome of the parapoxvirus, orf virus. Virology. 176:1990;379-389.
20. Garon C.F., Barbosa E., Moss B. Visualization of an inverted terminal repetition in vaccinia virus DNA. Proc. Natl. Acad. Sci. USA. 75:1978;4863-4867.
21. Gassmann U., Wyler R., Wittek R. Analysis of parapoxvirus genomes. Arch. Virol. 83:1985;17-31.
22. Gillard S., Spehner D., Drillien R., Kirn A. Localization and sequence of a vaccinia virus gene required for multiplication in human cells. Proc. Natl. Acad. Sci. USA. 83:1986;5573-5577.
23. Goebel S.J., Johnson G.P., Perkus M.E., Davis S.W., Winslow J.P., Paoletti E. The complete DNA sequence of vaccinia virus. Virology. 179:1990;247-266.
24. Kotwal G.J., Moss B. Analysis of a large cluster of nonessential genes deleted from a vaccinia virus terminal transposition mutant. Virology. 167:1988;524-537.
25. Kroczek R.A., Siebert E. Optimization of northern analysis by vacuum-blotting. RNA-transfer visualization, and ultraviolet fixation. Anal. Biochem. 184:1990;90-95.
26. Lai C.-K., Pogo B.G.-T. Characterization of vaccinia virus deletion mutants isolated from persistently infected Friend erythroleukemia cells. Virus Res. 12:1989;239-250.
27. Lake J.R., Cooper P.D. Deletions of the terminal sequences in the genomes of the white pock (u) and host-restricted (p) mutants of rabbitpox virus. J. Gen. Virol. 48:1980;135-147.
28. Lyttle D.J., Fraser K.M., Fleming S.B., Mercer A.A., Robinson A.J. Homologs of vascular endothelial growth factor are encoded by the poxvirus orf virus. J. Virol. 68:1994;84-92.
29. Mackett M., Archard L.C. Conservation and variation in orthopoxvirus genome structure. J. Gen. Virol. 45:1979;683-701.
30. Mayr A., Herlyn M., Mahnel H., Danco A., Zach A., Bostedt H. Bekämpfung des Ecthyma contagiosum (Pustulardermatitis) der Schafe mit einem neuen Parenteral-Zellkultur-Lebendimpfstoff. Zbl. Vet. Med. B. 28:1981;535-552.
31. McGeoch D.J. Protein sequence comparisons show that the pseudoproteases encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphate family. Nucleic Acid Res. 18:1990;4105-4110.
32. Mercer A.A., Fraser K.M., Barns G., Robinson A.J. The structure and cloning of orf virus DNA. Virology. 157:1987;1-12.
33. Mercer A.A., Fraser K.M., Stockwell P.A., Robinson A.J. A homologue of retroviral pseudoproteases in the parapoxvirus, orf virus. Virology. 172:1989;665-668.
34. Mercer A.A., Lyttle D.J., Whelan E.M., Fleming S.B., Sullivan J.T. The establishment of a genetic map of orf virus reveals a pattern of genomic organization that is highly conserved among divergent poxviruses. Virology. 212:1995;698-704.
35. Mercer A.A., Fraser K.M., Esposito J.J. Gene homology between orf virus and smallpox variola virus. Virus Genes. 13:1996;175-178.
36. Meyer H., Sutter G., Mayr A. Mapping of deletions in the genome of the highly attenuated vaccinia virus MVA and their influence on virulence. J. Gen. Virol. 72:1991;1031-1038.
37. Moss B., Winters E., Cooper J.A. Deletion of a 9000-base-pair segment of the vaccinia virus genome that encodes nonessential polypeptides. J. Virol. 40:1981;387-395.
38. Moss B. Regulation of vaccinia virus transcription. Annu. Rev. Biochem. 59:1990;661-688.
39. Moyer R.W., Rothe C.T. The white pock mutants of rabbit poxvirus. I. Spontaneous host range mutants contain deletions. Virology. 102:1980;119-132.
40. Moyer R.W., Graves R.L., Rothe C.T. The white pock (μ) mutants of rabbit poxvirus. III. Terminal DNA sequence duplication and transposition in rabbit poxvirus. Cell. 22:1980;545-553.
41. Paez E., Dallo S., Esteban M. Generation of a dominant 8-MDa deletion at the left terminus of vaccinia virus DNA. Proc. Natl. Acad. Sci. USA. 82:1985;3365-3369.
42. Panicali D., Davis S.W., Mercer S.R., Paoletti E. Two major DNA variants present in serially propagated stocks of the WR strain of vaccinia virus. J. Virol. 37:1981;1000-1010.
43. Perkus M.E., Goebel S.J., Davis S.W., Johnson G.P., Limbach K., Norton E.K., Paoletti E. Vaccinia virus host range genes. Virology. 179:1990;276-286.
44. Perkus M.E., Goebel S.J., Davis S.W., Johnson G.P., Norton E.K., Paoletti E. Deletion of 55 open reading frames from the termini of vaccinia virus. Virology. 180:1991;406-410.
45. Pickup D.J., Ink B.S., Parsons B.L., Hu W., Joklik W. Spontaneous deletions and duplications of sequences in the genome of cowpox virus. Proc. Natl. Acad. Sci. USA. 81:1984;6817-6821.
46. Pyles R.B., Sawtell N.M., Thompson R.L. Herpes simplex virus type I dUTPase mutants are attenuated for neurovirulence, neuroinvasiveness, and reactivation from latency. J. Virol. 66:1992;6706-6713.
47. Rafii F., Burger D. Comparison of contagious ecthyma virus genomes by restriction endonucleases. Arch. Virol. 84:1985;283-289.
48. Reed K.C., Mann D.A. Rapid transfer of DNA from agarose gels to nylon membranes. Nucl. Acids Res. 13:1985;7207-7221.
49. Robinson A.J., Balassu T.C. Contagious pustular dermatitis (orf). Vet. Bulletin. 51:1981;771-782.
50. Robinson A.J., Ellis G., Balassu T. The genome of orf virus: restriction endonuclease analysis of viral DNA isolated from lesions of orf in sheep. Arch. Virol. 71:1982;43-55.
51. Robinson A.J., Barns G., Fraser K., Carpenter E., Mercer A.A. Conservation and variation in orf virus genomes. Virology. 157:1987;13-23.
52. Robinson, A.J., Lyttle, D.J., 1992. Parapoxviruses: Their biology and potential as recombinant vaccines. In: Binns, M.M., Smith, G.L. (Eds.), Recombinant Poxviruses. CRC Press, pp. 285-327.
53. Sullivan J.T., Fraser K.M., Fleming S.B., Robinson A.J., Mercer A.A. Sequence and transcriptional analysis of an orf virus gene encoding ankyrin-like repeat sequences. Virus Genes. 9:1995;277-282.
54. Turner P.C., Moyer R.W. The molecular pathogenesis of poxviruses. Curr. Topics Microbiol. Immunol. 163:1990;125-151.
55. Wittek R., Menna A., Schümperli D., Stoffel S., Müller H.K., Wyler R. HindIII and SstI restriction sites mapped on rabbit poxvirus and vaccinia virus DNA. J. Virol. 23:1977;669-678.
56. Wittek R., Menna A., Müller H.K., Schümperli D., Boseley P.G., Wyler R. Inverted terminal repeats in rabbitpox virus and vaccinia virus DNA. J. Virol. 28:1978;171-181.
57. Wittek R., Moss B. Tandem repeats within the inverted terminal repetition of vaccinia virus DNA. Cell. 21:1980;277-284.
58. Yuen L., Moss B. Oligonucleotide sequence signaling transcriptional termination of vaccinia virus early genes. Proc. Natl. Acad. Sci. USA. 84:1987;6417-6421.