Genomic heterogeneity maps to tandem repeat sequences in the herpes simplex virus type 2 U(L) region

Virus Research

Volumn 55, Issue 2, 1998, Pages 221-231

  Yamaguchi, Taihei ^a,b,c   Yamashita, Yumi ^b   Kasamo, Kohtaro ^c   Masakazu Inoue, ^c   Sakaoka, Hiroshi ^a   Fujinaga, Kei ^b  

^a HOKKAIDO UNIVERSITY   (Japan)

^b Sapporo Medical University   (Japan)

^c KAGOSHIMA UNIVERSITY   (Japan)

Author keywords

HSV 2; RFLP; Tandem repeat sequence; Unique long sequence

Indexed keywords

ARTICLE; GENE MAPPING; GENETIC HETEROGENEITY; HERPES SIMPLEX VIRUS 2; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RESTRICTION FRAGMENT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOUTHERN BLOTTING; TANDEM REPEAT;

BASE SEQUENCE; CHROMOSOME MAPPING; DEOXYRIBONUCLEASE BAMHI; DNA, VIRAL; GENETIC HETEROGENEITY; HERPESVIRUS 2, HUMAN; HUMANS; MOLECULAR SEQUENCE DATA; TANDEM REPEAT SEQUENCES;

EID: 0032104664     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(98)00046-X     Document Type: Article

References (26)

1. Batterson W., Furlong D., Roizman B. Molecular genetics of herpes simplex virus. VIII. Further characterization of a temperature-sensitive mutant defective in release of viral DNA and in other stages of the viral reproductive cycle. J. Virol. 45:1983;397-407.
2. Davison A.J., Scott J.E. The complete DNA sequence of varicella-zoster virus. J. Gen. Virol. 67:1986;1759-1816.
3. Davison A.J., Wilkie N.M. Nucleotide sequences of the joint between the L and S segments of herpes simplex virus types 1 and 2. J. Gen. Virol. 55:1981;315-331.
4. Greaves R.F., O'Hare P. Sequence, function, and regulation of the Vmw65 gene of herpes simplex virus type 2. J. Virol. 65:1991;6705-6713.
5. Innis M.A., Myambo K.B., Gelfand D.H., Brow M.A.D. DNA sequencing with Thermus aquaticus DNA polymerase and direct sequencing of polymerase chain reaction-amplified DNA. Proc. Natl. Acad. Sci. U.S.A. 85:1988;9436-9440.
6. Lonsdale D.M., Brown S.M., Lang J., Subak-Sharpe J.H., Koprowski H., Warren K.G. Variations in herpes simplex virus isolated from human ganglia and a study of clonal variation in HSV-1. Ann. N.Y. Acad. Sci. 354:1980;291-308.
7. McGeoch D.J., Dolan A., Donald S., Pixon F.J. Sequence determination and genetic content of the short unique region in the genome of herpes simplex virus type 1. J. Mol. Biol. 181:1985;1-13.
8. McGeoch D.J., Dalrymple M.A., Davison A., Frame M.C., McNab D., Perry L.J., Scott J.E., Taylor P. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69:1988;1531-1574.
9. McGeoch D.J., Cunningham C., McIntyre G., Dolan A. Comparative sequence analysis of the long repeat regions and adjoining parts of the long unique regions in the genomes of herpes simplex viruses types a and 2. J. Gen. Virol. 72:1991;3057-3075.
10. Maxam A.M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65:1980;499-560.
11. Mocarski E.S., Roizman B. Site specific inversion sequence of the herpes simplex virus genome: domain and structural features. Proc. Natl. Acad. Sci. U.S.A. 78:1981;7047-7051.
12. Peden K., Mounts P., Hayward G.S. Homology between mammalian cell DNA sequence and human herpes virus genomes detected by hybridization procedure with high-complexity probe. Cell. 31:1982;71-80.
13. L of herpes simplex virus type 1. J. Virol. 70:1989;443-448.
14. Sakaoka H., Saito H., Sekine K., Aomori T., Grillner L., Wadell G., Fujinaga K. Genomic comparison of herpes simplex virus type 1 isolates from Japan, Sweden and Kenya. J. Gen. Virol. 68:1987;749-764.
15. Sakaoka H., Kawana T., Grillner L., Aomori T., Yamaguchi T., Saito H., Fujinaga K. Genome variations in herpes simplex virus type 2 strains isolated in Japan and Sweden. J. Gen. Virol. 68:1987;2105-2116.
16. Sakaoka H., Aomori T., Gouro T., Kumamoto Y. Demonstration of either endogenous recurrence or exogenous reinfection by restriction endonuclease cleavage analysis of herpes simplex virus from patients with recrudescent genital herpes. J. Med. Virol. 46:1995;387-396.
17. Sakaoka H., Kurita K., Gouro T., Kumamoto Y., Sawada S., Ihara M., Kawana T. Analysis of genomic polymorphism among herpes simplex virus type 2 isolates from four areas of Japan and three other countries. J. Med. Virol. 45:1995;259-272.
18. Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:1975;503-517.
19. Tsurumi T., Maeno K., Nishiyama Y. Molecular cloning of herpes simplex virus type 2 DNA. J. Biochem. 99:1986;981-984.
20. Ueno T., Suzuki N., Sakaoka H., Fujinaga K. A simple and practical method for typing and strain differentiation of herpes simplex virus using infected cell DNAs. Microbiol. Immunol. 26:1982;1159-1170.
21. Umene K., Eto T., Mori R., Takagi Y., Enquist L.W. Herpes simplex virus type 1 restriction fragment polymorphism determined using Southern hybridization. Arch. Virol. 80:1984;275-290.
22. Umene K., Watsom R.J., Enquist L.W. Tandem repeat DNA in an intergenic region of herpes simplex virus type 1 (Patton). Gene. 30:1984;33-39.
23. Varumuza S.L., Smiley J.R. Unstable heterozygosity in a diploid region of herpes simplex virus DNA. J. Virol. 49:1984;356-362.
24. Wagner M.J., Summers W.C. Structure of the joint region and the termini of the DNA of herpes simplex virus types 1. J. Virol. 27:1978;374-387.
25. Wilkie N.M., Davison A., Chartrand P., Stow N.D., Preston V.G., Timbury M.C. Recombination in herpes simplex virus: mapping of mutations and analysis of intertypic recombinants. Cold Spring Harbor Symposia on Quantitative Biology. 43:1978;827-840.
26. Yamaguchi T., Shindoh M., Amemiya A., Notani K., Fukuda H., Sakaoka H., Inoue M., Fujinaga K. Identification of human papilloma virus DNA sequence in the hyperplastic epithelium of an oral denture fibroma. Dis. Markers. 13:1997;135-140.