Models for haplotype evolution in a nonstationary population

Theoretical Population Biology

Volumn 53, Issue 3, 1998, Pages 184-198

  Fan, Ruzong ^a   Lange, Kenneth ^b  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0032100266     PISSN: 00405809     EISSN: None     Source Type: Journal    
DOI: 10.1006/tpbi.1997.1354     Document Type: Article

References (24)

1. Asmussen S., Hering H. Branching Processes. 1983;Birkhäuser, Boston.
2. Athreya K. B., Ney P. E. Branching Processes. 1972;Springer, New York. p. 199-205.
3. Fisher R. A. The Genetical Theory of Natural Selection. 1958;Dover, New York.
4. Haldane J. B. S. A mathematical theory of natural and artificial selection, Part V: Selection and mutation. Proc. Cambridge Philos. Soc. 23:1927;838-844.
5. Haldane J. B. S. The equilibrium between selection and random extinction. Ann. Eugenics. 9:1939;400-405.
6. Harris T. E. The Theory of Branching Processes. 1989;Dover, New York. p. 99.
7. Hästbacka J., de la Chapelle A., Kaitila I., Sistonen P., Weaver A., Lander E. Linkage disequilibrium mapping in isolated founder populations: Diastrophic dysplasia in Finland. Nature Genet. 2:1992;204-211.
8. Hästbacka J., de la Chapelle A., Mahtani, Clines G., Reeve-Daly M. P. M. M., Daly M., Hamilton B. A., Kusumi K., Trivedi B., Weaver A., Coloma A., Lovett M., Buckler A., Kaitila I., Lander E. S. The diastrophic dysplasia gene encodes a novel sulfate transporter: Positional cloning by fine-structure linkage disequilibrium mapping. Cell. 78:1994;1073-1087.
9. Hill W. G., Weir B. S. Maximum-likelihood estimation of gene location by linkage disequilibrium. Am. J. Hum. Genet. 54:1994;705-714.
10. Kaplan N. L., Hill W. G., Weir B. S. Likelihood methods for locating disease genes in nonequilibrium populations. Am. J. Hum. Genet. 56:1995;18-32.
11. Kaplan N. L., Weir B. S. Are moment bounds on the recombination fraction between a marker and a disease locus too good to be true? Allelic association mapping revisited for simple genetic diseases in the Finnish population. Am. J. Hum. Genet. 57:1995;1486-1498.
12. Lange K., Fan R. Z. Branching process models for mutant genes in nonstationary populations. Theor. Popul. Biol. 51:1997;118-133.
13. Lehesjoki A. E., Koshiniemi M., Norio R., Tirrito S., Sistonenen P., Lander E., de la Chapelle A. Localization of the EPM1 gene for progressive myoclonus epilepsy on chromosome: 21: Linkage disequilibrium allows high resolution mapping. Hum. Mol. Genet. 8:1993;1229-1234.
14. MacDonald M. E., Novelletto A., Lin C., Tagle D., Barnes G., Bates G., Taylor S., Allitto B., Altherr M., Myers R., Lehrach H., Collins F. S., Wasmuth J. J., Frontali M., Gusella J. F. The Huntinton's disease candidate region exhibits many different haplotypes. Nat. Genet. 1:1992;99-103.
15. Magnus J. R., Neudecker H. Matrix Differential Calculus with Applications in Statistics and Econometrics. 1988;Wiley, New York. p. 30-31.
16. Mitchison H., O'Rawe A. M., Taschner P. E. M., Sandkuijl L. A., Santavuoir P., de Vos N., Breuning M. H., Mole S. E., Gardiner R. M., Järvelä I. E. Battern disease gene, CLN: Linkage disequilibrium mapping in the Finnish population, and analysis of European haplotypes. Am. J. Hum. Genet. 56:1995;654-662.
17. Nagylaki T. Introduction to Theoretical Population Genetics. 1992;Springer, New York.
18. Pritchard C., Cox D. R., Myers R. M. The end in sight for Huntington disease ? Am. J. Hum. Genet. 49:1991;1-6.
19. Risch N., de Leon D., Ozelius L., Kramer P., Almasy L., Singer B., Fahn S., Breakfiels X., Bressman S. Genetic analysis of idiopathic torsion dystonia in Ashkenazi Jews and their recent descent from a small founder population. Nat. Gen. 9:1995;152-159.
20. Sirugo G., Keats B., Fujita R., Duclos F., Purohit F., Koenig M., Mandel J. L. Friedreich ataxia in Louisiana Acadians: Demonstration of a founder effect by analysis of microsatellite-generated expended haplotypes. Am. J. Hum. Genet. 50:1992;559-566.
21. Sulisalo T., Klockars J., Francomano C. A., de la Chappelle A., Kaitila I., Sistonen P. High-resolution linkage disequilibrium mapping of the cartilage-hair hypoplasia gene. Am. J. Hum. Genet. 55:1994;937-945.
22. Thompson E. A., Neel J. V., Smouse P. E., Barrantes R. Microevolution of the Chibcha-speaking peoples of lower central America: Rare genes in an Amerindian complex. Amer. J. Hum. Genet. 51:1992;609-626.
23. Thompson, E. A. Neel, J. V. 1996, Allelic disequilibrium and allele frequency distribution as a function of social and demographic history.
24. Uhrhammer N., Lange E., Porras O., Naiem A., Chen X., Sheikhavandi S., Chiplunkar S., Yang L., Dandekar S., Liang T., Patel N., Teraoka S., Udar N., Calvo N., Concannon P., Lange K., Gatti R. A. Sublocalization of an ataxia-telangiectasia gene distal to D11S384 by ancestral haplotyping of Costa Rican families. Am. J. Hum. Genet. 57:1995;103-111.