-
1
-
-
0020871235
-
Morphological variation in the neotropical salamander genus Bolitoglossa
-
ALBERCH, P. 1983. Morphological variation in the neotropical salamander genus Bolitoglossa. Evolution 37:906-919.
-
(1983)
Evolution
, vol.37
, pp. 906-919
-
-
Alberch, P.1
-
2
-
-
0026914673
-
Testing phylogenetic approaches with empirical data, as illustrated with the parsimony method
-
ALLARD, M. W., AND M. M. MIYAMOTO. 1992. Testing phylogenetic approaches with empirical data, as illustrated with the parsimony method. Mol. Biol. Evol. 9:778-786.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 778-786
-
-
Allard, M.W.1
Miyamoto, M.M.2
-
3
-
-
0000193378
-
Small sample size does decrease the stability of dendrograms calculated from allozyme-frequency data
-
ARCHIE, J. W., C. SIMON, AND A. MARTIN. 1989. Small sample size does decrease the stability of dendrograms calculated from allozyme-frequency data. Evolution 43:678-683.
-
(1989)
Evolution
, vol.43
, pp. 678-683
-
-
Archie, J.W.1
Simon, C.2
Martin, A.3
-
4
-
-
0031084426
-
Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony
-
BERLOCHER, S. H., AND D. L. SWOFFORD. 1997. Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony. Syst. Biol. 46:211-215.
-
(1997)
Syst. Biol.
, vol.46
, pp. 211-215
-
-
Berlocher, S.H.1
Swofford, D.L.2
-
5
-
-
0021565668
-
The application of electrophoretic data in systematic studies
-
BUTH, D. G. 1984. The application of electrophoretic data in systematic studies. Annu. Rev. Ecol. Syst. 15:501-522.
-
(1984)
Annu. Rev. Ecol. Syst.
, vol.15
, pp. 501-522
-
-
Buth, D.G.1
-
6
-
-
0001822040
-
Anguid lizards of the genus Abronia : Revisionary notes, description of four new species, a phylogenetic analysis, and key
-
CAMPBELL, J. A., AND D. R. FROST. 1993. Anguid lizards of the genus Abronia : Revisionary notes, description of four new species, a phylogenetic analysis, and key. Bull. Am. Mus. Nat. Hist. 216:1-121.
-
(1993)
Bull. Am. Mus. Nat. Hist.
, vol.216
, pp. 1-121
-
-
Campbell, J.A.1
Frost, D.R.2
-
7
-
-
0028963581
-
Do long branches attract flies?
-
CARMEAN, D., AND B. CRESPI. 1995. Do long branches attract flies? Nature 373:666.
-
(1995)
Nature
, vol.373
, pp. 666
-
-
Carmean, D.1
Crespi, B.2
-
8
-
-
0014082615
-
Phylogenetic analysis: Models and estimation procedures
-
CAVALLI-SFORZA, L. L., AND A. W. F. EDWARDS. 1967. Phylogenetic analysis: Models and estimation procedures. Am. J. Hum. Genet. 19:233257.
-
(1967)
Am. J. Hum. Genet.
, vol.19
, pp. 233257
-
-
Cavalli-Sforza, L.L.1
Edwards, A.W.F.2
-
9
-
-
84959758123
-
Congruence between morphometric and allozyme data for Menidia species: A reappraisal
-
COLLESS, D. H. 1980 Congruence between morphometric and allozyme data for Menidia species: A reappraisal. Syst. Zool. 29:288-299.
-
(1980)
Syst. Zool.
, vol.29
, pp. 288-299
-
-
Colless, D.H.1
-
10
-
-
84989491881
-
Is "some better than none" or do allele frequencies contain phylogenetically useful information?
-
CROTHER, B. I. 1990. Is "some better than none" or do allele frequencies contain phylogenetically useful information? Cladistics 6:277-281.
-
(1990)
Cladistics
, vol.6
, pp. 277-281
-
-
Crother, B.I.1
-
11
-
-
0002810435
-
Distance data in phylogenetic analysis
-
Proceeding of the first meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). New York Botanical Garden, New York
-
FARRIS, J. S. 1981. Distance data in phylogenetic analysis. Pages 3-23 in Advances in cladistics, Volume 1. Proceeding of the first meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). New York Botanical Garden, New York.
-
(1981)
Advances in Cladistics
, vol.1
, pp. 3-23
-
-
Farris, J.S.1
-
12
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
13
-
-
0001708655
-
Evolutionary trees from gene frequencies and quantitative characters: Finding maximum likelihood estimates
-
FELSENSTEIN, J. 1981. Evolutionary trees from gene frequencies and quantitative characters: Finding maximum likelihood estimates. Evolution 35:1229-1242.
-
(1981)
Evolution
, vol.35
, pp. 1229-1242
-
-
Felsenstein, J.1
-
14
-
-
0002245769
-
Phylogenies from gene frequencies: A statistical problem
-
FELSENSTEIN, J. 1985. Phylogenies from gene frequencies: A statistical problem. Syst. Zool. 34:300-311.
-
(1985)
Syst. Zool.
, vol.34
, pp. 300-311
-
-
Felsenstein, J.1
-
15
-
-
0024181337
-
Phylogenies and quantitative characters
-
FELSENSTEIN, J. 1988 Phylogenies and quantitative characters. Annu. Rev. Ecol. Syst. 19:445-471.
-
(1988)
Annu. Rev. Ecol. Syst.
, vol.19
, pp. 445-471
-
-
Felsenstein, J.1
-
16
-
-
0004130462
-
-
Department of Genetics, Univ. Washington, Seattle
-
FELSENSTEIN, J. 1995. PHYLIP, version 3.57c. Department of Genetics, Univ. Washington, Seattle.
-
(1995)
PHYLIP, Version 3.57c
-
-
Felsenstein, J.1
-
17
-
-
0010468533
-
Factors determining the accuracy of cladogram estimation: Evaluation using computer simulation
-
FIALA, K. L., AND R. R. SOKAL. 1985. Factors determining the accuracy of cladogram estimation: Evaluation using computer simulation. Evolution 39:609-622.
-
(1985)
Evolution
, vol.39
, pp. 609-622
-
-
Fiala, K.L.1
Sokal, R.R.2
-
19
-
-
0014211361
-
Construction of phylogenetic trees
-
FITCH, W. M., AND E. MARGOLIASH. 1967. Construction of phylogenetic trees. Science 155:279-284.
-
(1967)
Science
, vol.155
, pp. 279-284
-
-
Fitch, W.M.1
Margoliash, E.2
-
20
-
-
0000915977
-
Genetic distance and heterozygosity estimates in electrophoretic studies: Effects of sample size
-
GORMAN, G., AND J. RENZI, JR. 1979. Genetic distance and heterozygosity estimates in electrophoretic studies: Effects of sample size. Copeia 1979:242-249.
-
(1979)
Copeia
, vol.1979
, pp. 242-249
-
-
Gorman, G.1
Renzi J., Jr.2
-
21
-
-
0023501273
-
Molecular versus morphological approaches to systematics
-
HILLIS, D. M. 1987. Molecular versus morphological approaches to systematics. Annu. Rev. Ecol. Syst. 18:23-42.
-
(1987)
Annu. Rev. Ecol. Syst.
, vol.18
, pp. 23-42
-
-
Hillis, D.M.1
-
22
-
-
11944260381
-
Approaches for assessing phylogenetic accuracy
-
HILLIS, D. M. 1995. Approaches for assessing phylogenetic accuracy. Syst. Biol. 44:3-16.
-
(1995)
Syst. Biol.
, vol.44
, pp. 3-16
-
-
Hillis, D.M.1
-
23
-
-
0028362880
-
Application and accuracy of molecular phylogenies
-
HILLIS, D. M., J. P. HUELSENBECK, AND C. W. CUNNINGHAM. 1994. Application and accuracy of molecular phylogenies. Science 264:671-677.
-
(1994)
Science
, vol.264
, pp. 671-677
-
-
Hillis, D.M.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
-
24
-
-
11944268967
-
The performance of phylogenetic methods in simulation
-
HUELSENBECK, J. P. 1995. The performance of phylogenetic methods in simulation. Syst. Biol. 44:17-48.
-
(1995)
Syst. Biol.
, vol.44
, pp. 17-48
-
-
Huelsenbeck, J.P.1
-
25
-
-
0031084114
-
Is the Felsenstein zone a fly trap?
-
HUELSENBECK, J. P. 1997. Is the Felsenstein zone a fly trap? Syst. Biol. 46:69-74.
-
(1997)
Syst. Biol.
, vol.46
, pp. 69-74
-
-
Huelsenbeck, J.P.1
-
26
-
-
12044255023
-
Success of phylogenetic methods in the four-taxon case
-
HUELSENBECK, J. P., AND D. M. HILLIS. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
-
(1993)
Syst. Biol.
, vol.42
, pp. 247-264
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
-
27
-
-
0001230716
-
Accuracy of phylogenetic-estimation methods under unequal evolutionary rates
-
KIM, J., AND M. A. BURGMAN. 1988. Accuracy of phylogenetic-estimation methods under unequal evolutionary rates. Evolution 42:596-602.
-
(1988)
Evolution
, vol.42
, pp. 596-602
-
-
Kim, J.1
Burgman, M.A.2
-
28
-
-
0041193562
-
Random genetic drift in multiallelic locus
-
KIMURA, M. 1955. Random genetic drift in multiallelic locus. Evolution 9:419-435.
-
(1955)
Evolution
, vol.9
, pp. 419-435
-
-
Kimura, M.1
-
29
-
-
0039001431
-
Random genetic drift in a triallelic locus; exact solution with a continuous model
-
KIMURA, M. 1956. Random genetic drift in a triallelic locus; Exact solution with a continuous model. Biometrics 12:57-66.
-
(1956)
Biometrics
, vol.12
, pp. 57-66
-
-
Kimura, M.1
-
30
-
-
75949146309
-
The number of alleles that can be maintained in a finite population
-
KIMURA, M., AND J. F. CROW. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
-
(1964)
Genetics
, vol.49
, pp. 725-738
-
-
Kimura, M.1
Crow, J.F.2
-
31
-
-
0020560127
-
Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
-
KREITMAN, M. 1983. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304:412-417.
-
(1983)
Nature
, vol.304
, pp. 412-417
-
-
Kreitman, M.1
-
32
-
-
12044256396
-
Coding polymorphic data: Examples from allozymes and ontogeny
-
MABEE, P. M., AND J. HUMPHRIES. 1993. Coding polymorphic data: Examples from allozymes and ontogeny. Syst. Biol. 42:166-181.
-
(1993)
Syst. Biol.
, vol.42
, pp. 166-181
-
-
Mabee, P.M.1
Humphries, J.2
-
33
-
-
0002140320
-
Treating polymorphic characters in systematics: A phylogenetic treatment of electrophoretic data
-
Proceeding of the first meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). New York Botanical Garden, New York
-
MICKEVICH, M. F., AND C. MITTER. 1981. Treating polymorphic characters in systematics: A phylogenetic treatment of electrophoretic data. Pages 45-58 in Advances in cladistics, Volume 1. Proceeding of the first meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). New York Botanical Garden, New York.
-
(1981)
Advances in Cladistics
, vol.1
, pp. 45-58
-
-
Mickevich, M.F.1
Mitter, C.2
-
34
-
-
0001717785
-
Evolutionary patterns in allozyme data: A systematic approach
-
Proceedings of the second meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). Columbia Univ. Press, New York
-
MICKEVICH, M. F., AND C. MITTER. 1983. Evolutionary patterns in allozyme data: A systematic approach. Pages 169-176 in Advances in cladistics, Volume 2. Proceedings of the second meeting of the Willi Hennig Society (V. A. Funk and D. R. Brooks, eds.). Columbia Univ. Press, New York.
-
(1983)
Advances in Cladistics
, vol.2
, pp. 169-176
-
-
Mickevich, M.F.1
Mitter, C.2
-
35
-
-
38249004287
-
The phylogenetic analysis of allozyme data: Invalidity of coding alleles by presence/absence and recommended procedures
-
MURPHY, R. W. 1993. The phylogenetic analysis of allozyme data: Invalidity of coding alleles by presence/absence and recommended procedures. Biochem. Syst. Ecol. 21:25-38.
-
(1993)
Biochem. Syst. Ecol.
, vol.21
, pp. 25-38
-
-
Murphy, R.W.1
-
36
-
-
0000655270
-
Genetic distance between populations
-
NEI, M. 1972. Genetic distance between populations. Am. Nat. 106:238-292.
-
(1972)
Am. Nat.
, vol.106
, pp. 238-292
-
-
Nei, M.1
-
37
-
-
0023822631
-
Relationships between gene trees and species trees
-
PAMILO, P., AND M. NEI. 1988. Relationships between gene trees and species trees. Mol. Biol. Evol. 5:568-583.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
38
-
-
0004161838
-
-
Cambridge Univ. Press, New York
-
PRESS, W. H., B. P. FLANNERY, S. A. TEUKOLSKY, AND W. T. VETTERLING. 1988. Numerical recipes in C. Cambridge Univ. Press, New York.
-
(1988)
Numerical Recipes in C
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
39
-
-
0029499266
-
Polymorphic characters and phylogenetic analysis: A statistical perspective
-
RANNALA, B. 1995. Polymorphic characters and phylogenetic analysis: A statistical perspective. Syst. Biol. 44:421-429.
-
(1995)
Syst. Biol.
, vol.44
, pp. 421-429
-
-
Rannala, B.1
-
40
-
-
84963015767
-
Deriving phylogenetic trees from allele frequencies: A comparison of nine genetic distances
-
ROGERS, J. S. 1986. Deriving phylogenetic trees from allele frequencies: A comparison of nine genetic distances. Syst. Zool. 35:297-310.
-
(1986)
Syst. Zool.
, vol.35
, pp. 297-310
-
-
Rogers, J.S.1
-
41
-
-
0008096641
-
Evaluation of the restricted maximum-likelihood method for estimating phylogenetic trees using simulated allele-frequency data
-
ROHLF, F. J., AND M. C. WOOTEN. 1988. Evaluation of the restricted maximum-likelihood method for estimating phylogenetic trees using simulated allele-frequency data. Evolution 42:581-595.
-
(1988)
Evolution
, vol.42
, pp. 581-595
-
-
Rohlf, F.J.1
Wooten, M.C.2
-
42
-
-
0025694383
-
Accuracy of estimated phylogenies: Effects of tree topology and evolutionary model
-
ROHLF, F. J, W. S. CHANG, R. R. SOKAL, AND J. KIM. 1990. Accuracy of estimated phylogenies: Effects of tree topology and evolutionary model. Evolution 44:1671-1684.
-
(1990)
Evolution
, vol.44
, pp. 1671-1684
-
-
Rohlf, F.J.1
Chang, W.S.2
Sokal, R.R.3
Kim, J.4
-
43
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
44
-
-
0000691695
-
Effects of intraspecific variation on phylogenetic inference: A likelihood analysis of mtDNA restriction site data in cyprinid fishes
-
SMOUSE, P. E., T. E. DOWLING, J. A. TWOREK, W. R. HOEH, AND W. M. BROWN. 1991. Effects of intraspecific variation on phylogenetic inference: A likelihood analysis of mtDNA restriction site data in cyprinid fishes. Syst. Zool. 40:393-409.
-
(1991)
Syst. Zool.
, vol.40
, pp. 393-409
-
-
Smouse, P.E.1
Dowling, T.E.2
Tworek, J.A.3
Hoeh, W.R.4
Brown, W.M.5
-
45
-
-
0000825481
-
A statistical method for evaluating systematic relationships
-
SOKAL, R. R., AND C. D. MICHENER. 1958. A statistical method for evaluating systematic relationships. Univ. Kans. Sci. Bull. 28:1409-1438.
-
(1958)
Univ. Kans. Sci. Bull.
, vol.28
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.D.2
-
46
-
-
0039594153
-
-
Wagner Procedure Program. Illinois Natural History Survey, Champaign
-
SWOFFORD, D. L. 1983. WAGPROC, Version 4.2. Wagner Procedure Program. Illinois Natural History Survey, Champaign.
-
(1983)
WAGPROC, Version 4.2
-
-
Swofford, D.L.1
-
47
-
-
0001396591
-
Inferring evolutionary trees from gene frequency data under the principle of maximum parsimony
-
SWOFFORD, D. L., AND S. H. BERLOCHER. 1987. Inferring evolutionary trees from gene frequency data under the principle of maximum parsimony. Syst. Zool. 36:293-325.
-
(1987)
Syst. Zool.
, vol.36
, pp. 293-325
-
-
Swofford, D.L.1
Berlocher, S.H.2
-
48
-
-
0001140522
-
Phylogeny reconstruction
-
(D. M. Hillis and C. Moritz, eds.). Sinauer, Sunderland, Massachusetts
-
SWOFFORD, D. L., AND G. J. OLSEN. 1990. Phylogeny reconstruction. Pages 411-501 in Molecular systematics, 1st edition (D. M. Hillis and C. Moritz, eds.). Sinauer, Sunderland, Massachusetts.
-
(1990)
Molecular Systematics, 1st Edition
, pp. 411-501
-
-
Swofford, D.L.1
Olsen, G.J.2
-
49
-
-
0001336205
-
Phylogeny reconstruction
-
(D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, Massachusetts
-
SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogeny reconstruction. Pages 407-514 in Molecular systematics, 2nd edition (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, Massachusetts.
-
(1996)
Molecular Systematics, 2nd Edition
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
50
-
-
0024713112
-
Gene genealogy in three related populations: Consistency probability between gene and population trees
-
TAKAHATA, N. 1989. Gene genealogy in three related populations: Consistency probability between gene and population trees. Genetics 122:957-966.
-
(1989)
Genetics
, vol.122
, pp. 957-966
-
-
Takahata, N.1
-
51
-
-
11944270728
-
Polymorphic characters in phylogenetic systematics
-
WIENS, J. J. 1995. Polymorphic characters in phylogenetic systematics. Syst. Biol. 44:482-500.
-
(1995)
Syst. Biol.
, vol.44
, pp. 482-500
-
-
Wiens, J.J.1
-
52
-
-
0032351679
-
Testing phylogenetic methods with tree-congruence: Phylogenetic analysis of polymorphic morphological characters in phrynosomatid lizards
-
in press
-
WIENS, J. J. 1998. Testing phylogenetic methods with tree-congruence: Phylogenetic analysis of polymorphic morphological characters in phrynosomatid lizards. Syst. Biol. 47:(in press).
-
(1998)
Syst. Biol.
, vol.47
-
-
Wiens, J.J.1
-
53
-
-
0031484624
-
Accuracy of phylogenetic analysis including and excluding polymorphic characters
-
WIENS, J. J., AND M. R. SERVEDIO. 1997. Accuracy of phylogenetic analysis including and excluding polymorphic characters. Syst. Biol. 46:332-345.
-
(1997)
Syst. Biol.
, vol.46
, pp. 332-345
-
-
Wiens, J.J.1
Servedio, M.R.2
-
55
-
-
0001771498
-
Evolution in Mendelian populations
-
WRIGHT, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
56
-
-
0026031181
-
Inferences of species phylogeny in relation to segregation of ancient polymorphisms
-
WU, C.-I. 1991. Inferences of species phylogeny in relation to segregation of ancient polymorphisms. Genetics 127:429-435.
-
(1991)
Genetics
, vol.127
, pp. 429-435
-
-
Wu, C.-I.1
|