Characterization of the CSN1AG Allele of the Bovine αs1-Casein Locus by the Insertion of a Relict of a Long Interspersed Element

Journal of Dairy Science

Volumn 81, Issue 6, 1998, Pages 1735-1742

  Rando, A ^a   Di Gregorio, P ^a   Ramunno, L ^b   Mariani, P ^c   Fiorella, A ^a   Senese, C ^a   Marletta, D ^d   Masina, P ^a  

^a UNIVERSITY OF BASILICATA   (Italy)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^c UNIVERSITY OF PARMA   (Italy)

^d UNIVERSITY OF CATANIA   (Italy)

Author keywords

Bovine s1 casein; CSN1AG allele; Long interspersed element

Indexed keywords

CASEIN; DNA; MESSENGER RNA;

ALLELE; ANIMAL; ARTICLE; CATTLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; EXON; GENETICS; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

ALLELES; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; CASEINS; CATTLE; DNA; EXONS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, MESSENGER; SEQUENCE ALIGNMENT;

EID: 0032085211     PISSN: 00220302     EISSN: None     Source Type: Journal    
DOI: 10.3168/jds.S0022-0302(98)75741-8     Document Type: Article

References (47)

1. Brawerman, G. 1976. Characteristics and significance of the polyadenylate sequence in mammalian messenger RNA. Progr. Nucleic Acid Res. Mol. Biol. 17:117-148.
2. Caput, D., B. Beutler, K. Hartok, R. Thayer, S. Brown-Shimer, and A. Cerami. 1986. Identification of a common nucleotide sequence in the 3′-untranslated region of mRNA molecules specifying inflammatory mediators. Proc. Natl. Acad. Sci. USA 83:1670-1674.
3. Cathala, G., J. F. Savouret, B. Mendez, B. L. West, M. Karin, J. A. Martial, and J. D. Baxter. 1983. Laboratory methods: a method for isolation of intact translationally active ribonucleic acid. DNA 4:329-335.
4. s1-casein genomic variants using the allele-specific polymerase chain reaction. Anim. Genet. 23:425-429.
5. Deininger, P. L., M. A. Batzer, C. A. Hutchison, III, and M. H. Edgell. 1992. Master genes in mammalian repetitive DNA amplification. Trends Genet. 8:307-311.
6. Dyer, M. R., N. J. Gay, S. J. Powell, and J. E. Walker. 1989. ATP synthase from bovine mitochondria: complementary DNA sequence of the mitochondrial import precursor of the γ-subunit and the genome sequence of the mature protein. Biochemistry 28:3670-3680.
7. s1-casein allele in bovine milk and its occurrence in different breeds. Anim. Genet. 24:65-66.
8. Fanning, T. G., and M. F. Singer. 1987. LINE-1: a mammalian transposable element. Biochim. Biophys. Acta 910:203-212.
9. Goossens, M., and Y. W. Kan. 1981. DNA analysis in the diagnosis of hemoglobin disorders. Methods Enzymol. 76: 805-817.
10. s1-casein locus in cattle. Genet. Sel. Evol. 21:547-554.
11. Grosclaude, F., M. F. Mahé, J. C. Mercier, J. Bonnemaire, and J. H. Teissier. 1976. Polymorphisme des lactoprotéines de bovinés népalais. Ann. Génét. Sél. Anim. 8:461-479.
12. s1-casein in the N-terminal part. FEBS Lett. 11:109-113.
13. s1-casein and β-casein. Eur. J. Biochem. 26:328-337.
14. s1 caprine, ses effets, son évolution. INRA Prod. Anim. 7:3-19.
15. Hutchison III, C. A., S. C. Hardies, D. D. Loeb, W. R. Shehee, and M. H. Edgell. 1989. LINEs and related retroposons: Long Interspersed Repeated Sequences in the eukaryotic genome. Pages 593-617 in Mobile DNA. D. E. Berg and M. H. Howe, ed. Am. Soc. Microbiol., Washington, DC.
16. Irwin, D. M., R. T. White, and A. C. Wilson. 1993. Characterization of the cow stomach lysozyme genes: repetitive DNA and concerted evolution. J. Mol. Evol. 37:355-366.
17. Jackson, R. J. 1993. Cytoplasmic regulation of mRNA function: the importance of the 3′-untranslated region. Cell 74:9-14.
18. Jackson, R. J., and N. Standart. 1990. Do the poly(A) tail and 3′ untranslated region control mRNA translation? Cell 62: 15-24.
19. s1-casein E-encoding allele associated with reduced protein synthesis level. Gene 147:179-187.
20. s1-casein gene. Nucleic Acids Res. 19: 5591-5596.
21. Li, W.-H., and D. Graur. 1991. Fundamentals of Molecular Evolution. Sinauer Assoc., Sunderland, MA.
22. Lin, C. Y., A. J. McAllister, K. F. Ng-Kwai-Hang, and J. F. Hayes. 1986. Effect of milk protein loci on first lactation production in dairy cattle. J. Dairy Sci. 69:704-712.
23. s1-caseina in vacche di razza Bruna. Ind. Latte 29:75-85.
24. s2, β e κ in vacche di razza Bruna. Ind. Latte 31:3-13.
25. s1-Cn G allele on the main characteristics and nitrogen fractions of milk from Italian Brown cows. Sci. Tecn. Latt.-Cas. 47:245-260.
26. McLean, D. M., E.R.B. Graham, R. W. Ponzoni, and H. A. McKenzie. 1984. Effects of milk protein genetic variants on milk yield and composition. J. Dairy Res. 51:531-546.
27. Medrano, J. F., and E. Aguilar-Cordova. 1990. Genotyping of bovine kappa-casein loci following DNA sequence amplification. Bio/Technology 8:144-146.
28. s1-casein. Eur. J. Biochem. 23:41-51.
29. Ng-Kwai-Hang, K. F., J. F. Hayes, J. E. Moxley, and H. G. Monardes. 1984. Association of genetic variants of casein and milk serum proteins with milk, fat and protein production by dairy cattle. J. Dairy Sci. 67:835-840.
30. Ng-Kwai-Hang, K. F., J. F. Hayes, J. E. Moxley, and H. G. Monardes. 1986. Relationship between milk protein polymorphisms and major milk constituents in Holstein-Friesian cows. J. Dairy Sci. 69:22-26.
31. Prinzenberg, E. M., and G. Erhardt. 1995. Nachweis von seltenen Milchproteinvarianten in vom Aussterben bedrohten Rinderrassen durch molekulargenetische Methoden. Pages 60-66 in Proc. 21st Congr. Dtsche. Veterinärmed. Gesellschaft, Bad Nauheim, Germany. Dtsche. Veterinärmed. Gesellschaft, Giessen, Germany.
32. s1-casein locus by means of RFLPs. Proc. 4th World Congr. Genet. Appl. Livest. Prod., Edinburgh, Scotland XIV: 241-244.
33. s1 di bovino. Pages 175-176 in Proc. 11th Congr. Naz. Assoc. Sci. Prod. Anim., Grado, Italy. Grafiche Fulvio, Udine, Italy.
34. s1-casein gene. Anim. Genet. 23:55.
35. s1 di bovino. Pages 617-620 in Proc. 10th Congr. Naz. Assoc. Sci. Prod. Anim., Bologna, Italy. Ave. Media, Bologna, Italy.
36. Ross, J., and G. Kobs. 1986. H4 histone messenger RNA decay in cell-free extracts initiates at or near the 3′ terminus and proceeds 3′ to 5′. J. Mol. Biol. 188:579-593.
37. s1-casein types. J. Dairy Sci. 51:28-30.
38. s1-casein. Sci. Tecn. Latt.-Cas. 46:290-300.
39. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. Sanger, F., S. Nicklen, and A. D. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
41. Shaw, G., and R. Kamen. 1986. A conserved AU sequence from the 3′ untranslated region of GM-CSF mRNA mediates selective mRNA degradation. Cell 46:659-667.
42. Singer, M. F. 1982. Highly repeated sequences in mammalian genomes. Int. Rev. Cytol. 76:67-112.
43. s1 and κ-casein cDNAs. Nucleic Acids Res. 12:3895-3907.
44. Threadgill, D. W., and J. E. Womack. 1990. Genomic analysis of the major bovine milk protein genes. Nucleic Acids Res. 18: 6935-6942.
45. Vilotte, J. L., S. Soulier, and J. C. Mercier. 1993. Complete sequence of a bovine α-lactalbumin pseudogene: the region homologous to the gene is flanked by two directly repeated LINE sequences. Genomics 16:529-532.
46. Weiner, A. M., P. L. Deininger, and A. Efstratiadis. 1986. Nonviral retroposons: genes, pseudogenes and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55:631-661.
47. Wilson, T., and R. Treisman. 1988. Removal of a poly (A) and consequent degradation of c-fos mRNA facilitated by the 3′ AU-rich sequences. Nature 336:396-399.