Interaction of the 530 ribosomal site with regions of mRNA

BioSystems

Volumn 46, Issue 3, 1998, Pages 293-298

  Mendoza, Luis ^a   Mondragón, Mariana ^a   Lagúnez Otero, Jaime ^a  

^a Instituto de Quimica de la UNAM   (Mexico)

Author keywords

530 loop; mRNA rRNA; Protein translation

Indexed keywords

MESSENGER RNA;

ARTICLE; BASE PAIRING; GENETIC STABILITY; RIBOSOME SUBUNIT; RNA TRANSLATION; START CODON; STOP CODON;

EID: 0032078006     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0303-2647(98)00009-4     Document Type: Article

References (19)

1. Alff-Steinberg C., Epstein B. Codon preference in the terminal region of E. coli genes and evolution of stop codon usage. J. Theor. Biol. 168:1994;461-463.
2. Bilofsky H.S., Burks C., Fickett J.W., Goad W.B., Lewitter F.I., Rindone W.P., Swindell C.D., Tung C.S. The GenBank genetic sequence data bank. Nucl. Acid Res. 14(1):1986;1-4.
3. Curran J.F. Experimental evidence that the GHN pattern in mRNA is not involved in framing. J. Mol. Biol. 235:1994;389-396.
4. Dontsova O., Kopylov A., Brimacombe R. The location of mRNA in the ribosomal 30S initiation complex, site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon. EMBO J. 10:1991;2613-2620.
5. Dontsova O., Dokudovkaya S., Kopylov A., Bogdanov A., Rinke-Appel J., Junke N., Brimacombe R. Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region, a site-directed cross-linking study with mRNA analogues. EMBO J. 11:1992;3105-3116.
6. Freier S.M., Kierzek R., Jaeger J.A., Sugimoto N., Caruthers M.H., Neilson T., Turner D.H. Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. USA. 83:1986;9373-9377.
7. Gornick P., Nurse K., Hellmann W., Boublik M., Ofengand J. High resolution localization of the tRNA anticodon interaction site on the Escherichia coli 30S ribosomal subunit. J. Biol. Chem. 259:1984;10493-10498.
8. Kozak M. A consideration of alternative models for the initiation of translation in eucaryotes. Crit. Rev. Biochem. Mol. Biol. 27(4, 5):1992;385-402.
9. Lagúnez-Otero J. rRNA - mRNA complementarily: implications for translation initiation. Trends Biochem. Sci. 18:1993;406-408.
10. Lagúnez-Otero J., Trifonov E.N. mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J. Biomol. Struct. Dynam. 10:1992;455-463.
11. McKuskie O.H., Lasater L.S., Cann P.A., Glitz D.G. Messenger RNA orientation on the ribosome. J. Biol. Chem. 263:1988;15196-15204.
12. Mendoza L., Lagúnez-Otero J. The ribosome as an exon detector. BioSystems. 38(1):1996;45-49.
13. Moazed D., Noller H.F. Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell. 47:1986;985-994.
14. Noller H.F. Ribosomal RNA and translation. Annu. Rev. Biochem. 60:1991;191-227.
15. Oakes M., Scheinman A., Atha T., Shankweiler G., Lake J.A. Ribosome structure: three-dimensional locations of rRNA and proteins. Garrett R.A., Moore P.B., Schlessinger D., Warner J.R. The Ribosome, Structure, Function and Evolution. 1990;American Society for Microbiology, Washington, DC.
16. Raué H., Musters W., Rutgers C., Van't Riet J., Planta R. rRNA: from structure to function. Garrett R.A., Moore P.B., Schlessinger D., Warner J.R. The Ribosome, Structure, Function and Evolution. 1990;American Society for Microbiology, Washington, DC.
17. Shine J., Dalgarno L. The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarily to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. USA. 71:1974;1342-1346.
18. Trifonov E.N. Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences. J. Mol. Biol. 194:1987;643-652.
19. Woese C.R., Fox G.E., Zablen L., Uchida T., Bonen L., Pechman K., Lewis B.J., Stahl D. Conservation of primary structure in 16S ribosomal RNA. Nature. 254:1975;83-86.