Differences in gene expression between sleep and waking as revealed by mRNA differential display

Molecular Brain Research

Volumn 56, Issue 1-2, 1998, Pages 293-305

  Cirelli, Chiara ^a   Tononi, Giulio ^a  

^a NEUROSCIENCES INSTITUTE   (United States)

Author keywords

Cerebral cortex; Differential PCR display; Fos; Mitochondrion; Rat; Sleep; Sleep deprivation; Wakefulness; Zif 268

Indexed keywords

CYTOCHROME C OXIDASE; MESSENGER RNA; MITOCHONDRIAL RNA; NERVE GROWTH FACTOR; PROTEIN C FOS; PROTEIN SUBUNIT; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RIBOSOME RNA; TRANSCRIPTION FACTOR;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRAIN CORTEX; CIRCADIAN RHYTHM; CONTROLLED STUDY; ENZYME SUBUNIT; GENE EXPRESSION; GENETIC TRANSCRIPTION; IN SITU HYBRIDIZATION; LIGHT DARK CYCLE; MALE; METABOLISM; MITOCHONDRION; NONHUMAN; PRIORITY JOURNAL; RAT; REM SLEEP; RNA SEQUENCE; SLEEP; SLEEP DEPRIVATION; VALIDATION PROCESS; WAKEFULNESS;

ANIMALS; CELL NUCLEUS; DNA, COMPLEMENTARY; DNA, MITOCHONDRIAL; GENE EXPRESSION; GENOME; IN SITU HYBRIDIZATION; MALE; POLYMERASE CHAIN REACTION; RATS; RATS, INBRED WKY; REPRODUCIBILITY OF RESULTS; RIBONUCLEASES; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SLEEP; TRANSCRIPTION, GENETIC; WAKEFULNESS;

ANIMALIA;

EID: 0032077577     PISSN: 0169328X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-328X(98)00057-6     Document Type: Article

References (53)

1. P. Arrighi, C. Cirelli, G. Tononi, M. Pompeiano, Jun B expression during sleep-waking states and after sleep deprivation, Sleep Res. 25 (1996) 457.
2. Attardi G., Schatz G. Biogenesis of mitochondria. Ann. Rev. Cell Biol. 4:1988;289-333.
3. Axel R., Feigelson P., Schutz G. Analysis of the complexity and diversity of mRNA from chicken liver and oviduct. Cell. 7:1976;247-254.
4. Azzi A., Müller M. Cytochrome c oxidases: polypeptide composition, role of subunits, and location of active metal centers. Arch. Biochem. Biophys. 280:1990;242-251.
5. Basheer R., Sherin J.E., Saper C.B., Morgan J.I., McCarley R.W., Shiromani P.J. Effects of sleep on wake-induced c-fos expression. J. Neurosci. 15:1997;9746-9750.
6. Bauer D., Müller H., Reich J., Riedel H., Ahrenkiel V., Warthoe P., Strauss M. Identification of differentially expressed mRNA species by an improved display technique (DDRT-PCR). Nucl. Acid. Res. 21:1993;4272-4280.
7. Bobillier P., Sakai F., Seguin F., Jouvet M. The effect of sleep deprivation upon the in vivo incorporation of tritiated amino acids into brain proteins in the rat at three different age levels. J. Neurochem. 22:1974;23-31.
8. Borbély A.A., Neuhaus H.U. Daily patterns of sleep, motor activity and feeding in the rat: effects of regular and gradually extended photoperiods. J. Comp. Physiol. 124:1978;1-14.
9. Capaldi R.A. Structure and assemply of cytochrome c oxidase. Arch. Biochim. Biophys. 280:1990;252-262.
10. Cirelli C., Pompeiano M., Tononi G. Fos-like immunoreactivity in the rat brain in spontaneous waking and sleep. Arch. Ital. Biol. 131:1993;327-330.
11. Cirelli C., Pompeiano M., Tononi G. Sleep deprivation and c-fos expression in the rat brain. J. Sleep Res. 4:1995;92-106.
12. Cirelli C., Pompeiano M., Arrighi P., Tononi G. Sleep-waking changes after c-fos antisense injections in the medial preoptic area. Neuroreport. 6:1995;801-805.
13. Cirelli C., Pompeiano M., Tononi G. Neuronal gene expression in the waking state: a role for the locus coeruleus. Science. 274:1996;1211-1215.
14. C. Cirelli, M. Pompeiano, G. Tononi, Immediate early genes as a tool to understand the regulation of the sleep-waking cycle: immunocytochemistry, in situ hybridization and antisense approaches, in: R. Lydic (Ed.), Molecular Regulation of Arousal States. CRC Press, Boca Raton, 1998, pp. 45-55.
15. Curran T., Gordon M.B., Rubino K.L., Sambucetti L.C. Isolation and characterization of the c-fos (rat) cDNA and analysis of posttranscriptional modification in vitro. Oncogene. 2:1987;79-84.
16. Douglass J., McKinzie A.A., Couceyro P. PCR differential display identifies a rat brain mRNA that is transcriptionally regulated by cocaine and amphetamine. J. Neurosci. 15:1995;2471-2481.
17. Ereciñska M., Silver I.A. ATP and brain function. J. Cereb. Blood Flow Metab. 9:1989;2-19.
18. Gelfand R., Attardi G. Synthesis and turnover of mitochondrial ribonucleic acid in HeLa cells: the mature ribosomal and messenger ribonucleic acid species are metabolically unstable. Mol. Cell Biol. 1:1981;497-511.
19. Giuditta A., Rutigliano B., Vitale-Neugebauer A. Influence of synchronized sleep on the biosynthesis of RNA in neuronal and mixed fractions isolated from rabbit cerebral cortex. J. Neurochem. 35:1980;1267-1272.
20. Grassi-Zucconi G., Menegazzi M., Carcereri de Prati A., Bassetti A., Montagnese P., Mandile P., Cosi C., Bentivoglio M. c-fos mRNA is spontaneously induced in the rat brain during the activity period of the circadian cycle. Eur. J. Neurosci. 5:1993;1071-1078.
21. Hevner R.F., Wong-Riley M.T.T. Neuronal expression of nuclear and mitochondrial genes for cytochrome oxidase (CO) subunits analyzed by in situ hybridization: comparison with CO activity and protein. J. Neurosci. 11:1991;1942-1958.
22. Hevner R.F., Wong-Riley M.T.T. Mitochondrial and nuclear gene expression for cytochrome oxidase subunits are disproportionately regulated by functional activity in neurons. J. Neurosci. 13:1993;1805-1819.
23. J.A. Horne, Why we sleep. The Functions of Sleep in Humans and Other Mammals. Oxford University Press, Oxford, 1988, 319 pp.
24. Hughes P., Dragunow M. Induction of immediate-early genes and the control of neurotransmitter-regulated gene expression within the nervous system. Pharmacol. Rev. 47:1995;133-178.
25. Hundt E., Trapp M., Kadenbach B. Biosynthesis of cytochrome c oxidase in isolated rat hepatocytes. FEBS Lett. 115:1980;95-99.
26. Krueger J.M., Obal F. Jr., Kapas L., Fang J. Brain organization and sleep function. Behav. Brain Res. 69:1995;177-186.
27. Ledoux L., Sastre J.-P., Buda C., Luppi P.-H., Jouvet M. Alterations in c-fos expression after different experimental procedures of sleep deprivation in the cat. Brain Res. 735:1996;108-118.
28. Lee J.J., Costlow N.A. A molecular titration assay to measure transcript prevalence levels. Meth. Enzymol. 152:1987;633-648.
29. Liang P., Pardee A.B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science. 257:1992;967-971.
30. Liang P., Averboukh L., Pardee A.B. Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization. Nucl. Acid. Res. 21:1993;3269-3275.
31. Lopéz L., Lorente L., Arias J., Gonzales-Pardo H., Cimadevilla J., Arias J.I. Changes in cytochrome oxidase activity in rat suprachismatic nucleus. Brain Res. 769:1997;367-371.
32. O.H. Lowry, Energy metabolism in brain and its control, in: D.H. Ingvar, L.A. Lassen (Eds.), Brain Work: The Coupling of Function, Metabolism, and Blood Flow in the Brain, Academic Press, New York, 1975, pp. 48-64.
33. Mäkelä T.P., Hellsten E., Vesa J., Hirvonen H., Palotie A., Peltonen L., Alitalo K. The arranged L-myc fusion gene (RLF) encodes a Zn-15 related zinc finger protein. Oncogene. 11:1995;2699-2704.
34. Maquet P. Sleep function(s) and cerebral metabolism. Behav. Brain Res. 69:1995;75-83.
35. Mawe G.M., Gershon M.D. Functional heterogeneity in the myenteric plexus: demonstration using cytochrome oxidase as a verified cytochemical probe of the activity of individual enteric neurons. J. Comp. Neurol. 249:1986;381-391.
36. Menegazzi M., Carcereri de Prati A., Grassi-Zucconi G. Differential expression pattern of jun B and c-jun in the rat brain during the 24-h cycle. Neurosci. Lett. 182:1994;295-298.
37. Milbrandt J.A. A nerve growth factor-induced gene encodes a possible transcriptional regulatory factor. Science. 238:1987;797-799.
38. Nie F., Wong-Riley M.T.T. Mitochondrial- and nuclear-encoded subunits of cytochrome oxidase in neurons: differences in compartmental distribution, correlation with enzyme activity, and regulation by neuronal activity. J. Comp. Neurol. 373:1996;139-155.
39. O' Hara B.F., Young K.A., Watson F.L., Craig Heller H., Kilduff T.S. Immediate early gene expression in brain during sleep deprivation: preliminary observations. Sleep. 16:1993;1-7.
40. Panov A. RNA and protein content of brain stem cells after sleep deprivation. Riv. Biol. 75:1982;95-99.
41. Pompeiano M., Cirelli C., Tononi G. Effects of sleep deprivation on Fos-like immunoreactivity in the rat brain. Arch. Ital. Biol. 130:1992;325-335.
42. Pompeiano M., Cirelli C., Tononi G. Immediate-early genes in spontaneous wakefulness and sleep: Expression of c-fos and NGFI-A mRNA and protein. J. Sleep Res. 3:1994;80-96.
43. Pompeiano M., Cirelli C., Ronca-Testoni S., Tononi G. NGFI-A expression in the rat brain after sleep deprivation. Mol. Brain Res. 46:1997;143-153.
44. M. Pompeiano, C. Cirelli, G. Tononi, Reverse transcription mRNA differential display: a systematic approach to identify changes in gene expression across the sleep-waking cycle, in: R. Lydic (Ed.), Molecular Regulation of Arousal States, CRC Press, Boca Raton, 1998, pp. 157-165.
45. Ramm P., Frost B.J. Regional metabolic activity in the rat brain during sleep-wake activity. Sleep. 6:1983;196-216.
46. Rhyner T.A., Borbély A.A., Mallet J. Molecular cloning of forebrain mRNAs which are modulated by sleep deprivation. Eur. J. Neurosci. 2:1990;1063-1073.
47. L. Sokoloff, Metabolic Probes of Central Nervous System Activity in Experimental Animals and Man, Sinauer, Sunderland, MA, 1984.
48. M. Steriade, R.W. McCarley, (Eds.) Brainstem Control of Wakefulness and Sleep. New York, Plenum, 1990, 499 pp.
49. Tobler I., Franken P., Gao B., Jaggi K., Borbély A.A. Sleep deprivation in the rat at different ambient temperature: effect on sleep, EEG spectra and brain temperature. Arch. Ital. Biol. 132:1994;39-52.
50. Virbasius J.V., Scarpulla R.C. The rat cytochrome oxidase subunit IV gene family: tissue-specific and hormonal differences in subunit IV and cytochrome c expression. Nucl. Acid. Res. 18:1990;6581-6586.
51. Wan J.S., Sharp S.J., Poirier G.M.-C., Wagaman P.C., Chambers J., Pyati J., Hom Y.-L., Galindo J.E., Huvar A., Peterson P.A., Jackson M.R., Erlander M.G. Cloning differentially expressed mRNAs. Nature Biotechnology. 14:1996;1685-1691.
52. Wong-Riley M.T.T., Mullen M.A., Huang Z., Guyer C. Brain cytochrome oxidase subunit complementary DNAs: isolation, subcloning, sequencing, light and electron microscopic in situ hybridization of transcripts, and regulation by neuronal activity. Neuroscience. 76:1997;1035-1055.
53. Zhang C., Wong-Riley M.T.T. Effect of depolarization on cytochrome oxidase gene expression in primary neuronal culture of rat cortex. Soc. Neurosci. Abstr. 23:1997;89.