3D Accordion Spectroscopy for Measuring 15N and 13CO Relaxation Rates in Poorly Resolved NMR Spectra

Journal of Magnetic Resonance

Volumn 132, Issue 1, 1998, Pages 25-33

  Carr, Peter A ^a   Fearing, David A ^a   Palmer III, Arthur G ^a  

^a Columbia University ^*  (United States)

Author keywords

Accordion spectroscopy; NMR; Relaxation

Indexed keywords

AMINO ACID; CARBON; CARBON MONOXIDE; FIBRONECTIN; NITROGEN; TENASCIN;

ALGORITHM; ARTICLE; ELECTRON SPIN RESONANCE; HUMAN; INTERFEROMETRY; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SPECTROSCOPY;

ALGORITHMS; AMINO ACIDS; CARBON; CARBON ISOTOPES; CARBON MONOXIDE; ELECTRON SPIN RESONANCE SPECTROSCOPY; FIBRONECTINS; HUMANS; INTERFEROMETRY; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN; NITROGEN ISOTOPES; SPECTRUM ANALYSIS; TENASCIN;

EID: 0032061037     PISSN: 10907807     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmre.1998.1374     Document Type: Article

References (35)

1. A. G. Palmer, J. Williams, and A. McDermott, Nuclear magnetic resonance studies of biopolymer dynamics, J. Phys. Chem. 100, 13,293-13,310 (1996).
2. 15N spin relaxation measurements, J. Magn. Reson. B 102, 253-264 (1993).
3. F. Delaglio, S. Grzesiek, G. Vuister, G. Zhu, J. Pfeifer, and A. Bax, NMRPipe: A multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR 6, 277-293 (1995).
4. P. Mishra, Z. Zolnai, N. Juranic, and S. Macura, Measurement of relaxation rates from 2D spectra with partial overlap, J. Magn. Reson. 125, 358-363 (1997).
5. P. A. Carr, H. P. Erickson, and A. G. Palmer, Backbone dynamics of homologous fibronectin type III cell adhesion domains from fibronectin and tenascin, Structure 5, 949-959 (1997).
6. A. M. Mandel, M. Akke, and A. G. Palmer, Dynamics of ribonuclease H: Temperature dependence of motions on multiple time scales, Biochemistry 35, 16,009-16,023 (1996).
7. J. Cavanagh, W. J. Fairbrother, A. G. Palmer, and N. J. Skelton, "Protein NMR Spectroscopy: Principles and Practice," Academic Press, San Diego (1996).
8. G. Bodenhausen, and R. R. Ernst, The accordion experiment, a simple approach to three-dimensional NMR Spectroscopy, J. Magn. Reson. 45, 367-373 (1981).
9. G. Bodenhausen, and R. R. Ernst, Direct determination of rate constants of slow dynamic processes by two-dimensional "accordion" spectroscopy in nuclear magnetic resonance, J. Am. Chem. Soc. 104, 1304-1309 (1982).
10. 1H one-bond couplings in proteins using accordion heteronuclear-shift-correlation experiments, J. Magn. Reson. B 112, 269-274 (1996).
11. G. Kontaxis and J. Keeler, The accordion approach for "taylored" TOCSY, J. Magn. Reson. A 115, 35-41 (1995).
12. A. M. Mandel and A. G. Palmer, Measurement of relaxation-rate constants using constant-time accordion NMR Spectroscopy, J. Magn. Reson. A 110, 62-72 (1994).
13. L. E. Kay and J. H. Prestegard, Spin-lattice relaxation rates of coupled spins from 2D accordion Spectroscopy, J. Magn. Reson. 77, 599-605 (1988).
14. T. Szyperski, G. Wider, J. H. Bushweller, and K. Wüthrich, Reduced dimensionality in triple-resonance NMR experiments, J. Am. Chem. Soc. 115, 9307-9310 (1993).
15. L. E. Kay, M. Ikura, R. Tschudin, and A. Bax, Three-dimensional triple-resonance NMR spectroscopy of isotopically enriched proteins, J. Magn. Reson. 89, 496-514 (1990).
16. 13CO longitudinal relaxation, J. Biomol. NMR 7, 157-162 (1996).
17. 15N-enriched proteins using high-resolution nuclear magnetic resonance, J. Am. Chem. Soc. 119, 7797-7806 (1997).
18. 1H detection, J. Magn. Reson. 73, 375-379 (1987).
19. D. J. States, R. A. Haberkorn, and D. J. Ruben, A two-dimensional nuclear Overhauser experiment with the pure absorption phase in four quadrants, J. Magn. Reson. 48, 286-292 (1982).
20. A. G. Palmer, J. Cavanagh, P. E. Wright, and M. Rance, Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR spectroscopy, J. Magn. Reson. 93, 151-170 (1991).
21. G. Zhu and A. Bax, Improved linear prediction for truncated signals of known phase, J. Magn. Reson. 90, 405-410 (1990).
22. A. Bax, M. Ikura, L. E. Kay, and G. Zhu, Removal of F1 baseline distortion and optimization of folding in multidimensional NMR spectra, J. Magn. Reson. 91, 174-178 (1991).
23. L. E. Kay, P. Keifer, and T. Saarinen, Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity, J. Am. Chem. Soc. 114, 10,663-10,665 (1992).
24. H. Barkhuijsen, R. de Beer, and D. van Ormondt, Improved algorithm for noniterative time-domain model fitting to exponentially damped magnetic resonance signals, J. Magn. Reson. 73, 553-557 (1987).
25. W. H. Press, B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling, "Numerical Recipes: The Art of Scientific Computing," 2nd. ed., Cambridge Univ. Press, Cambridge (1986).
26. 13C heteronuclear NMR spectroscopy, J. Am. Chem. Soc. 113, 4371-4380 (1991).
27. D. Marion, M. Ikura, and A. Bax, Improved solvent suppression in one- and two-dimensional NMR spectra by convolution of time-domain data, J. Magn. Reson. 84, 425-430 (1989).
28. 2 ridges in 2D NMR spectra and procedures for suppression, J. Magn. Reson. 66, 187-193 (1986).
29. 2O in protein NMR. Application to sensitivity enhancement and NOE experiments, J. Am. Chem. Soc. 115, 12,593-12,594 (1993).
30. 2O saturation, J. Magn. Reson. A 109, 129-133 (1994).
31. A. J. Shaka, J. Keeler, T. Frenkiel, and R. Freeman, An improved sequence for broadband decoupling : WALTZ-16, J. Magn. Reson. 52, 334-338 (1983).
32. A. J. Shaka, P. B. Barker, and R. Freeman, Computer-optimized decoupling scheme for wideband applications and low-level operation, J. Magn. Reson. 64, 547-552 (1985).
33. D. Marion, M. Ikura, R. Tschudin, and A. Bax, Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins, J. Magn. Reson. 85, 393-399 (1989).
34. 2O solutions, J. Magn. Reson. 85, 608-613 (1989).
35. M. Akke, P.A. Carr, and A. G. Palmer, Heteronuclear-correlation NMR spectroscopy with simultaneous isotope filtration, quadrature detection, and sensitivity enhancement using z rotations, J. Magn. Reson. B 104, 298-302 (1994).