Molecular dynamics simulation of glycoprotein-glycans of immunoglobulin G and immunoglobulin M

Biopolymers

Volumn 45, Issue 3, 1998, Pages 177-190

  Mukhopadhyay, Chaitali ^a,b  

^a BOSE INSTITUTE   (India)

^b UNIVERSITY OF CALCUTTA   (India)

Author keywords

Fc region; Glycoprotein glycans; Molecular dynamics; Simulated annealing

Indexed keywords

CONFORMATIONS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; OLIGOMERS; POLYSACCHARIDES; SIMULATED ANNEALING;

GLYCOPROTEIN GLYCAN; IMMUNOGLOBULINS;

PROTEINS;

GLYCAN; GLYCOPROTEIN;

ARTICLE; CONFORMATIONAL TRANSITION; NUCLEAR MAGNETIC RESONANCE; PROTEIN ANALYSIS; PROTEIN DEGRADATION; STRUCTURE ANALYSIS;

CARBOHYDRATE SEQUENCE; COMPUTER SIMULATION; FUCOSE; HYDROGEN BONDING; IMMUNOGLOBULIN G; IMMUNOGLOBULIN M; MANNOSE; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEOGLYCANS;

EID: 0032032871     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(199803)45:3<177::AID-BIP1>3.0.CO;2-O     Document Type: Article

References (31)

1. Rademacher, T. W., Parekh, R. B. & Dwek, R. A. (1988) Ann. Rev. Biochem, 57, 785-838.
2. Kronfeld, R. & Kronfeld, S. (1985) Ann. Rev. Biochem. 54, 631-664.
3. Kassenbrock, C. K., Garcia, P. D., Walter, P. & Kelly, R. B. (1988) Nature 333, 90-93.
4. Recny, M. A., et al. (1992) J. Biol. Chem. 267, 22428-22434.
5. Imperiali, B. & Rickert, K. W. (1995) Proc. Natl. Acad. Sci. USA 92, 97-101.
6. Woods, R. J., Edge, C. J. & Dwek, R. A. (1994) Nat. Struct. Biol. 1, 499-501.
7. Geisow, M. J. (1992) Trends Biotech. 10, 333-335.
8. Mer, G., Hietter, H. & Lefevre, J. F. (1996) Nat. Struct. Biol. 3, 45-53.
9. Wyss, D. F., Choi, J. S. & Wagner, G. (1995) Biochemistry 34, 1622-1634.
10. Wyss, D. F., et al. (1995) Science 269, 1273-1278.
11. Hughes, R. C. (1983) in Glycoproteins, Brammer, W. J. & Edidin, Eds., Chapman & Hall, London, New York, pp. 18-21.
12. Rudd, P. M., Joao, H. C., Coghill, E., Fiten, P., Saunders, M. R., Opdenakker, G. & Dwek, R. A. (1994) Biochemistry 33, 17-22.
13. Dwek, R. A. (1995) Science 269, 1234-1235, and references therein.
14. Deisenhofer, J. (1981) Biochemistry 20, 2361-2370.
15. Balaji, P. V., Qasba, P. K. & Rao, V. S. R. (1993) Biochemistry 32, 12599-12611.
16. Wu, P., Rice, K. G., Brand, L. & Lee, Y. C. (1991) Proc. Natl. Acad. Sci. USA 88, 9355-9359.
17. Homans, S. W., Pastore, A., Dwek, R. A. & Rademacher, T. W. (1987) Biochemistry 26, 6649-6655.
18. Rutherford, T. J. & Homans, Homans, S. W. (1994) Biochemistry 33, 9606-9614.
19. Bush, C. A. (1992) Curr. Opin. Struct. Biol. 2, 655-660, and references therein.
20. Cumming, D. A. & Carver, J, P. (1987) Biochemistry 26, 6664-6676.
21. Brady, J. W. (1991) Curr. Opin. Struct. Biol. 1, 711-715, and references therein.
22. Rutherford, T. J., Partridge, J., Weller, C. T. & Homans, S. W. (1993) Biochemistry 32, 12715-12724.
23. Imberty, A., Gerber, S., Tran, V. & Ferez, S. (1990) Glycoconj. J. 7, 27-54.
24. Imberty, A., Delage, M.-M., Bourne, Y., Cambillau, C. & Perez, S. (1991) Glycoconj. J. 8, 456-483.
25. Paulsen, M. D. & Ornstein, R. L. (1996) Protein Eng. 9, 567-571.
26. Edge, C. J., Singh, U. C., Bazzo, R., Taylor, G. L., Dwek, R. A. & Rademacher, T. W. (1990) Biochemistry 29, 1971-1979.
27. Mukhopadhyay, C. & Bush, C. A. (1994) Biopolymers 34, 11-20.
28. Mukhopadhyay, C. & Bush, C. A. (1991) Biopolymers 31, 1737-1746.
29. Wooten, E. W., Bazzo, R., Edge, C. J., Zamze, S., Dwek, R. A. & Rademacher, T. W. (1990) Eur. Biophys. J. 18, 139-148.
30. Mukhopadhyay, C., Miller, K. E. & Bush, C. A. (1994) Biopolymers 34, 21-29.
31. Weller, C. T., Lustbader, J., Seshadri, K., Brown, J. M., Chadwick, C. A., Kolthoff, C. E., Ramnarain, S., Pollak, S., Canfield, R. & Homans, S. W. (1996) Biochemistry 35, 8815-8823.