FISH studies reveal the molecular and chromosomal organization of individual telomere domains in tomato

Plant Journal

Volumn 13, Issue 4, 1998, Pages 507-517

  Zhong, Xiao Bo ^a   Fransz, Paul F ^a   Eden, Jannie Wennekes Van ^a   Ramanna, M S ^a   Van Kammen, Ab ^a   Zabel, Pim ^a   Hans de Jong, J ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

ARTICLE; CHROMOSOME; CHROMOSOME MAP; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PULSED FIELD GEL ELECTROPHORESIS; TELOMERE; TOMATO; ULTRASTRUCTURE;

BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES; DNA, PLANT; ELECTROPHORESIS, GEL, PULSED-FIELD; IN SITU HYBRIDIZATION, FLUORESCENCE; LYCOPERSICON ESCULENTUM; REPETITIVE SEQUENCES, NUCLEIC ACID; TELOMERE;

EMBRYOPHYTA; LYCOPERSICON ESCULENTUM;

EID: 0032006668     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1998.00055.x     Document Type: Article

References (52)

1. Alfenito, M.R. and Birchler, J.A. (1993) Molecular characterisation of a maize B chromosome centric sequence. Genetics, 135, 589-597.
2. Ashikawa, I., Kurata. N., Nagamura, Y. and Minobe, Y. (1994) Cloning and mapping of telomere-associated sequences from rice. DNA Res. 1, 67-76.
3. Barnes, S.R., James, A.M. and Jamieson, G. (1985) The organisation, nucleotide sequence and chromosomal distribution of a satellite DNA from Allium cepa. Chromosoma, 32, 185-192.
4. Bennett, M.D. (1982) Nucleotypic basis of the spatial ordering of chromosomes in eukaryotes and the implications of the order for genome evolution and phenotypic variation. In Genome Evolution (Dover, G.A. and Flavell, R.B., eds). London: Academic Press, pp. 239-261.
5. Biessmann, H. and Mason, J.M. (1994) Telomeric repeat sequences. Chromosoma, 103, 154-161.
6. Blackburn, E.H. (1994) Telomeres: no end in sight. Cell, 77, 621-623.
7. Brandes, A., Röder, M.S. and Ganal, M.W. (1995) Barley telomeres are associated with two different type of satellite DNA sequences. Chromosome Res. 3, 315-320.
8. Broun, P., Ganal, M.W. and Tanksley, S.D. (1992) Telomeric arrays display high levels of heritable polymorphism among closely related plant varieties. Proc. Natl Acad. Sci. USA 89, 1354-1357.
9. Burr, B., Burr, F.A., Matz, E.G. and Romero-Severson, J. (1992) Pinning down loose ends: mapping telomeres and factors affecting their length. Plant Cell, 4, 953-960.
10. Cawood, A.H. and Jones, J.K. (1980) Chromosome behaviour during meiotic prophase in the Solanaceae. Chromosoma, 80, 57-68.
11. Cox, A.V., Bennett, S.T., Parokonny, A.S.P., Kenton, A., Callimassia, M.A. and Bennett, M.D. (1993) Comparison of plant telomere locations using a PCR-generated synthetic probe. Ann. Bot. 72, 239-247.
12. Dernburg, A.F., Sedat, J.W., Cande, W.Z. and Bass, H.W. (1995) Cytology of telomeres. In Telomeres (Blackburn, E.H. and Greider, C.W., eds). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp. 295-338.
13. Fransz, P.F., Alonso-Blanco, C., Liharska, T.B., Peeters, A.J.M., Zabel, P. and de Jong, J.H. (1996) High resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridisation to extended DNA fibre. Plant J. 9, 421-430.
14. Fransz, P.F., de Jong, J.H. and Zabel, P. (1998) Preparation of extended DNA fibres for high resolution mapping by fluorescence in situ hybridization (FISH) In Plant Molecular Biology Manual (Gelvin, S.B. and Schilperoort, R.A., eds). Dordrecht: Kluwer Acad. Publ, in press.
15. Ganal, M.W., Broun, P. and Tanksley, S.D. (1992) Genetic mapping of tandemly repeated telomeric DNA sequences in tomato (Lycopersicon esculentum). Genomics, 14, 444-448.
16. Ganal, M.W., Lapitan, N.L.V. and Tanksley, S.D. (1991) Macrostructure of the tomato telomeres. Plant Cell, 3, 87-94.
17. Garagna, S., Redi, C.A., Capanna, E., Andayani, N., Alfano, R.M., Doi, P. and Viale, G. (1993) Genome distribution, chromosomal allocation, and organization of the major and minor satellite DNAs in 11 species and subspecies of the genus Mus. Cytogenet Cell Genet. 64, 247-255.
18. Greilhuber, J. and Loidl, J. (1983) On regularities of C-banding patterns, and their possible cause. In Proceedings of the Second Kew Chromosome Conference (Brandham, PE. and Bennett, M.D., eds). London: George Allen & Unwin, pp. 344.
19. Heitz, E. (1932) Die Herkunft der Chromozentren. Planta, 18, 571-636.
20. Heng, H.H.Q., Chamberlain, J.W., Shi, X.M., Spyropoulos, B., Tsui, L.C. and Moens, P.B. (1996) Regulation of meiotic chromatin loop size by chromosomal position. Proc. Natl Acad. Sci. USA, 93, 2795-2800.
21. Kilian, A. and Kleinhofs, A. (1992) Cloning and mapping of telomere-associated sequences from Hordeum vulgare L. Mol. Gen. Genet., 235, 153-156.
22. Kolchinsky, A.M. and Gresshof, P.M. (1994) Plant telomeres as molecular markers. In Plant Genome Analysis (Gresshof, P.M. ed.). Boca Raton: CRC Press, pp. 113-124.
23. Lapitan, N.L.V., Ganal, M.W. and Tanksley, S.D. (1989) Somatic chromosome karyotype of tomato based on in situ hybridisation of the TGRI satellite repeat. Genome, 32, 992-998.
24. Lapitan, N.L.V., Ganal, M.W. and Tanksley, S.D. (1991) Organization of the 5S ribosomal RNA genes in the genome of tomato. Genome, 34, 509-514.
25. n telomeric sequence in vertebrate chromosomes. Chromosoma, 99, 3-10.
26. Moens, P.B. and Pearlman, R.E. (1990a) Telomere and centromere DNA are associated with the cores of meiotic prophase chromosomes. Chromsosoma, 100, 8-14.
27. Moens, P.B. and Pearlman, R.E. (1990b) In situ DNA sequence mapping with surface-spread mouse pachytene chromosomes. Cytogenet. Cell Genet. 53, 219-220.
28. n, present at the telomeres of human chromosomes. Proc. Natl Acad. Sci. USA, 85, 6622-6626.
29. Parra, I. and Windle, B. (1993) High resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet. 5, 17-21.
30. Presting, G.G., Frary, A., Pillen, K. and Tanksley, S.D. (1996) Telomere-homologous sequences occur near the centromeres of many tomato chromosomes. Mol. Gen. Genet. 251, 526-531.
31. Prince, J.P., Pochard, E. and Tanksley, S.D. (1993) Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome, 36, 404-417.
32. Ramanna, M.S. and Prakken, R. (1967) Structure of and homology between pachytene and somatic metaphase chromosomes of the tomato. Genetica, 38, 115-133.
33. Rawlins, D.J., Highett, M.I. and Shaw, P.J. (1991) Localization of telomeres in plant interphase nuclei by in situ hybridization and 3D confocal microscopy. Chromosoma, 100, 424-431.
34. Richards, E.J., Chao, S., Vongs, A. and Yang, J. (1992) Characterization of Arabidopsis thaliana telomeres isolated in yeast. Nucl. Acids Res. 20, 4039-4046.
35. Richards, E.J., Goodman, H.M. and Ausuet, F.M. (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucl. Acids Res. 19, 3351-3357.
36. Roder, M.S., Lapitan, N.L.V., Sorrells, M.E. and Tanksley, S.D. (1993) Genetic and physical mapping of barley telomeres. Mol. General Genet. 238, 294-303.
37. Schweizer, G., Ganal, M.W., Ninnemann, H. and Hemleben, V. (1988) Species-specific DNA sequences for the identification of somatic hybrids between Lycopersion esculentum and Solanum acaule. Theor. Appl. Genet. 75, 679-684.
38. Sherman, J. and Stack, S.M. (1995) Two-dimensional spreads of synaptonemal complexes from Solanaceous plants. VI. High resolution recombination nodule map for tomato (Lycopersicon escutentum). Genetics, 141, 683-708.
39. Suja, J.A. and Rufas, U.S. (1994) The telomere: a telomeric differentiation of the chromosome axis. Chromosome Res. 2, 361-368.
40. Tanksley, S.D., Bernatzky, R., Lapitan, N.L. and Prince, J.P. (1988) Conservation of gene repertoire but not gene order in pepper and tomato. Proc. Natl Acad. Sci. USA, 85, 6419-6423.
41. Tanksley, S.D., Ganal, M.W., Prince, J.P. et al. (1992) High density molecular linkage maps of tomato and potato genomes. Genetics, 132, 1141-1160.
42. Van Daelen, R.A.J.J. and Zabel, P. (1994) Preparation of high molecular weight plant DNA and analysis by pulsed field gel electrophoresis. In Plant Molecular Biology Manual (Gelvin, S.B. and Schilperoort, R.A., eds). Dordrecht: Kluwer Academic Publishers, pp. 1-21.
43. Vershinin, A.V., Schwarzacher, T. and Heslop-Harrison, J.S. (1995) The large-scale genomic organization of repetitive DNA families at the telomeres of rye chromosomes. Plant Cell, 7, 1823-1833.
44. Wiegant, J., Kalle, W., Mullenders, L., Brookes, S., Hoovers, J.M.N., Dauwerse, J.G., van Ommen, G.J.B. and Raap, A.K. (1992) High-resolution in situ hybridization using DNA halo preparations. Human Mol. Genet. 1, 587-591.
45. Wright, W.E. and Shay, J.W. (1992) Telomere positional effects and the regulation of cellular senescence. Trend Genet. 8, 193-197.
46. Wu, K.S. and Tanksley, S.D. (1993) Genetic and physical mapping of telomeres and macrosatellites of rice. Plant Mol Biol. 22, 861-872.
47. Wu, H.K., Chung, M.C., Wu, T., Ning, C.N. and Wu, R. (1991) Localization of specific repetitive DNA sequences in individual rice chromosomes. Chromosoma, 100, 330-338.
48. Xu, J. and Earle, E.D. (1996a) Direct FISH of 5S rDNA on tomato pachytene chromosomes places the gene at the heterochromatic knob immediately adjacent to the centromere of chromosome 1. Genome, 39, 216-221.
49. Xu, J. and Earle, E.D. (1996b) High resolution physical mapping of 45S (5.8S, 18S and 25S) rDNA gene loci in the tomato genome using a combination of karyotyping and FISH of pachytene chromosomes. Chromosoma, 104, 545-550.
50. Zakian, V.A. (1995) Telomeres: beginning to understand the end. Science, 270, 1601-1607.
51. Zhong, X.B., de Jong, J.H. and Zabel, P. (1996a) Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescence in situ hybridisation (FISH). Chromosome Res. 4, 24-28.
52. Zhong, X.B., Fransz, P.F., Wennekes-van Eden, J., Zabel, P., van Kammen, A. and de Jong, J.H. (1996b) High resolution mapping by fluorescence in situ hybridisation to pachytene chromosomes and extended DNA fibres. Plant Mol. Biol. Reporter, 14, 232-242.