-
1
-
-
0023918675
-
Structure and function of bacterial sigma factors
-
Helmann, J.D., Chamberlin, M.J. Structure and function of bacterial sigma factors. Annu. Rev. Biochem. 57:839-872, 1988.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 839-872
-
-
Helmann, J.D.1
Chamberlin, M.J.2
-
2
-
-
0023713630
-
Promoter selectivity of prokaryotic RNA polymerases
-
Ishihama, A. Promoter selectivity of prokaryotic RNA polymerases. Trends Genet. 4:282-286, 1988.
-
(1988)
Trends Genet.
, vol.4
, pp. 282-286
-
-
Ishihama, A.1
-
3
-
-
0000776061
-
Bacterial σ-factors
-
McKnight, S., Yamamoto, K. (eds.). New York: Cold Spring Harbor Laboratory Press
-
Gross, C.A., Lonetto, M.A., Losick, R. Bacterial σ-factors. In: "Transcription Regulation." McKnight, S., Yamamoto, K. (eds.). New York: Cold Spring Harbor Laboratory Press, 1992:129-176.
-
(1992)
Transcription Regulation
, pp. 129-176
-
-
Gross, C.A.1
Lonetto, M.A.2
Losick, R.3
-
4
-
-
0030728648
-
Adaptation of gene expression in stationary phase bacteria
-
Ishihama, A. Adaptation of gene expression in stationary phase bacteria. Curr. Opin. Genet. Dev. 7:582-588, 1997.
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 582-588
-
-
Ishihama, A.1
-
5
-
-
0026019420
-
Identification of a subunit assembly domain in the alpha subunit of E. coli RNA polymerase
-
Igarashi, K., Fujita, N., Ishihama, A. Identification of a subunit assembly domain in the alpha subunit of E. coli RNA polymerase. J. Mol. Biol. 218:1-6, 1991.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 1-6
-
-
Igarashi, K.1
Fujita, N.2
Ishihama, A.3
-
6
-
-
0025778597
-
Bipartite functional map of E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP
-
Igarashi, K., Ishihama, A. Bipartite functional map of E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP. Cell 65:1015-1022, 1991.
-
(1991)
Cell
, vol.65
, pp. 1015-1022
-
-
Igarashi, K.1
Ishihama, A.2
-
7
-
-
0030045015
-
DNA binding determinants of the α-subunit of RNA polymerase: A novel DNA binding domain architecture
-
Gaal, T., Ross, W., Blatter, E.E., Tang, H., Jia, X., Krishnan, V.V., Assa-Munt, N., Ebright, R.H., Gourse, R.L. DNA binding determinants of the α-subunit of RNA polymerase: A novel DNA binding domain architecture. Genes Dev. 10:16-26, 1996.
-
(1996)
Genes Dev.
, vol.10
, pp. 16-26
-
-
Gaal, T.1
Ross, W.2
Blatter, E.E.3
Tang, H.4
Jia, X.5
Krishnan, V.V.6
Assa-Munt, N.7
Ebright, R.H.8
Gourse, R.L.9
-
8
-
-
0029756802
-
Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element
-
Murakami, K., Fujita, N., Ishihama, A. Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element. EMBO J. 15:4358-4367, 1995.
-
(1995)
EMBO J.
, vol.15
, pp. 4358-4367
-
-
Murakami, K.1
Fujita, N.2
Ishihama, A.3
-
9
-
-
0028020497
-
Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compound
-
Mustaev, A., Zaychikov, E., Severinov, K., Kashlev, M., Polyakov, A., Nikiforov, V., Goldfarb, A. Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compound. Proc. Natl. Acad. Sci. USA 91: 12036-12040, 1994.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12036-12040
-
-
Mustaev, A.1
Zaychikov, E.2
Severinov, K.3
Kashlev, M.4
Polyakov, A.5
Nikiforov, V.6
Goldfarb, A.7
-
10
-
-
0028784960
-
The β-subunit Rif-cluster I is only angstroms away from the active center of Escherichia coli RNA polymerase
-
Severinov, K., Mustaev, A., Severinova, E., Kozlov, M., Darst, S.A., Goldfarb, A. The β-subunit Rif-cluster I is only angstroms away from the active center of Escherichia coli RNA polymerase. J. Biol. Chem. 270:29428-29432, 1995.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 29428-29432
-
-
Severinov, K.1
Mustaev, A.2
Severinova, E.3
Kozlov, M.4
Darst, S.A.5
Goldfarb, A.6
-
11
-
-
0027327859
-
CAP interacts with RNA polymerase in solution in the absence of promoter DNA
-
Heyduk, T., Lee, J.C., Ebright, Y.W., Blatter, E.E., Zhou, Y., Ebright, R.H. CAP interacts with RNA polymerase in solution in the absence of promoter DNA. Nature 364:548-549, 1993.
-
(1993)
Nature
, vol.364
, pp. 548-549
-
-
Heyduk, T.1
Lee, J.C.2
Ebright, Y.W.3
Blatter, E.E.4
Zhou, Y.5
Ebright, R.H.6
-
12
-
-
0027513647
-
Interaction of bacterial RNA polymerase with two different promoters of phage T7 DNA. Conformational analysis
-
Ozoline, O.N., Uteshev, T.A., Masulis, I.S., Kamzolova, S.G. Interaction of bacterial RNA polymerase with two different promoters of phage T7 DNA. Conformational analysis. Biochim. Biophys. Acta 1172:251-261, 1993.
-
(1993)
Biochim. Biophys. Acta
, vol.1172
, pp. 251-261
-
-
Ozoline, O.N.1
Uteshev, T.A.2
Masulis, I.S.3
Kamzolova, S.G.4
-
13
-
-
0016703832
-
Sigma cycle during in vitro transcription: Demonstration by nano-second fluorescence depolarization spectroscopy
-
Wu, Ch.-W., Yarbrough, L.R., Hillci, Z., Wu, F.Y.-H. Sigma cycle during in vitro transcription: Demonstration by nano-second fluorescence depolarization spectroscopy. Proc. Natl. Acad. Sci. USA 72:3019-3023, 1975.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 3019-3023
-
-
Wu, Ch.-W.1
Yarbrough, L.R.2
Hillci, Z.3
Wu, F.Y.-H.4
-
14
-
-
0023665078
-
Fluorescence resonance energy transfer studies on the proximity relationship between the intrinsic metal ion and substrate binding sites of Escherichia coli RNA polymerase
-
Wu, F.Y.-H., Tyagi, S.C. Fluorescence resonance energy transfer studies on the proximity relationship between the intrinsic metal ion and substrate binding sites of Escherichia coli RNA polymerase. J. Biol. Chem. 262:13147-13154, 1987.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 13147-13154
-
-
Wu, F.Y.-H.1
Tyagi, S.C.2
-
15
-
-
0025117624
-
Resonance energy transfer study on the proximity relationship between the GTP binding site and rifampicin binding site of E. coli RNA polymerase
-
Kumar, K.P., Chatterji, D. Resonance energy transfer study on the proximity relationship between the GTP binding site and rifampicin binding site of E. coli RNA polymerase. Biochemistry 29:317-322, 1990.
-
(1990)
Biochemistry
, vol.29
, pp. 317-322
-
-
Kumar, K.P.1
Chatterji, D.2
-
16
-
-
0022048892
-
Topography of cysteine residues in the DNA dependent RNA polymerase
-
Selutchenko, O.A., Chertov, O.Yu., Lipkin, V.M. Topography of cysteine residues in the DNA dependent RNA polymerase. Bioorg. Khim. 11:481-491, 1985.
-
(1985)
Bioorg. Khim.
, vol.11
, pp. 481-491
-
-
Selutchenko, O.A.1
Chertov, O.Yu.2
Lipkin, V.M.3
-
17
-
-
0026018948
-
Specific modification of Escherichia coli RNA polymerase with monomercury derivative of fluoresceine acetate
-
Ozoline, O.N., Uteshev, T., Kamzolova, S.G. Specific modification of Escherichia coli RNA polymerase with monomercury derivative of fluoresceine acetate. Biochem. Biophys. Acta 1076:387-394. 1991.
-
(1991)
Biochem. Biophys. Acta
, vol.1076
, pp. 387-394
-
-
Ozoline, O.N.1
Uteshev, T.2
Kamzolova, S.G.3
-
18
-
-
0026471585
-
Role of RNA polymerase α subunit in transcription activation
-
Ishihama, A. Role of RNA polymerase α subunit in transcription activation. Mol. Microbiol. 6:3283-3288, 1992.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 3283-3288
-
-
Ishihama, A.1
-
19
-
-
0027262508
-
Protein-protein communication within the transcription apparatus
-
Ishihama, A. Protein-protein communication within the transcription apparatus. J. Bacteriol. 175:2483-2489, 1993.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 2483-2489
-
-
Ishihama, A.1
-
20
-
-
0028061282
-
Promoter structure, promoter recognition and transcription activation in prokaryotes
-
Busby, S., Ebright, R.H. Promoter structure, promoter recognition and transcription activation in prokaryotes. Cell 79:743-746, 1994.
-
(1994)
Cell
, vol.79
, pp. 743-746
-
-
Busby, S.1
Ebright, R.H.2
-
21
-
-
0026666529
-
Mapping of the Escherichia coli RNA polymerase contact site I for cAMP receptor protein
-
Zou, C., Fujita, N., Igarashi, K., Ishihama, A. Mapping of the Escherichia coli RNA polymerase contact site I for cAMP receptor protein. Mol. Microbiol. 6:2599-2650, 1992.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 2599-2650
-
-
Zou, C.1
Fujita, N.2
Igarashi, K.3
Ishihama, A.4
-
22
-
-
0027761839
-
A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
-
Ross, W., Gosink, K.K., Salomon, K.I., Zou, C., Ishihama, A., Severinov, K., Gourse, R.L. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science 262:1407-1413, 1993.
-
(1993)
Science
, vol.262
, pp. 1407-1413
-
-
Ross, W.1
Gosink, K.K.2
Salomon, K.I.3
Zou, C.4
Ishihama, A.5
Severinov, K.6
Gourse, R.L.7
-
23
-
-
0028809521
-
Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase α-subunit
-
Tao, K., Zou, C., Fujita, N., Ishihama, A. Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase α-subunit. J. Bacteriol. 177:6740-6744, 1995.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6740-6744
-
-
Tao, K.1
Zou, C.2
Fujita, N.3
Ishihama, A.4
-
24
-
-
0029153579
-
Repression and activation of transcription by Gal and Lac repressors: Involvement of alpha subunit of RNA polymerase
-
Choy, H.E., Park, S.W., Aki, T., Parrack, P., Fujita, N., Ishihama, A., Adhya, S. Repression and activation of transcription by Gal and Lac repressors: Involvement of alpha subunit of RNA polymerase. EMBOJ. 14:4523-4529, 1995.
-
(1995)
EMBOJ.
, vol.14
, pp. 4523-4529
-
-
Choy, H.E.1
Park, S.W.2
Aki, T.3
Parrack, P.4
Fujita, N.5
Ishihama, A.6
Adhya, S.7
-
25
-
-
0029043983
-
NusA interferes with interactions between the nascent RNA and the C-terminal domain of the α subunit of RNA polymerase in Escherichia coli transcription complex
-
Liu, K., Hanna, M.H. NusA interferes with interactions between the nascent RNA and the C-terminal domain of the α subunit of RNA polymerase in Escherichia coli transcription complex. Proc. Natl. Acad. Sci. USA 92:5012-5016, 1995.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5012-5016
-
-
Liu, K.1
Hanna, M.H.2
-
26
-
-
0029056377
-
Functional map of the alpha subunit of Escherichia coli RNA polymerase: Insertion analysis of the amino-terminal assembly domain
-
Kimura, M., Ishihama, A. Functional map of the alpha subunit of Escherichia coli RNA polymerase: Insertion analysis of the amino-terminal assembly domain. J. Mol. Biol. 248:756-767, 1995.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 756-767
-
-
Kimura, M.1
Ishihama, A.2
-
27
-
-
0029609246
-
Functional map of the alpha subunit of Escherichia coli RNA polymerase: Amino acid substitution within the amino-terminal assembly domain
-
Kimura, M., Ishihama, A. Functional map of the alpha subunit of Escherichia coli RNA polymerase: Amino acid substitution within the amino-terminal assembly domain. J. Mol. Biol. 254:342-349, 1995.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 342-349
-
-
Kimura, M.1
Ishihama, A.2
-
28
-
-
0030155940
-
Subunit assembly in vivo of Escherichia coli RNA polymerase: Role of the amino-terminal assembly domain of alpha subunit
-
Kimura, M., Ishihama, A. Subunit assembly in vivo of Escherichia coli RNA polymerase: Role of the amino-terminal assembly domain of alpha subunit. Genes Cells 1:517-528, 1996.
-
(1996)
Genes Cells
, vol.1
, pp. 517-528
-
-
Kimura, M.1
Ishihama, A.2
-
29
-
-
0001873246
-
An assay method for disulfide groups by fluorescence quenching
-
Karush, F., Flinman, N.R., Marks, R. An assay method for disulfide groups by fluorescence quenching. Anal. Biochem. 9:100-114, 1964.
-
(1964)
Anal. Biochem.
, vol.9
, pp. 100-114
-
-
Karush, F.1
Flinman, N.R.2
Marks, R.3
-
30
-
-
0016224374
-
Investigation of conformational mobility of D-glyceraldehyde-3 phosphate dehydrogenase active site
-
Mosk
-
Markovich, D.C., Krapivinskij, G.B., Neznaiko, N.F. Investigation of conformational mobility of D-glyceraldehyde-3 phosphate dehydrogenase active site. Mol. Biol. (Mosk) 8:475-486, 1974.
-
(1974)
Mol. Biol.
, vol.8
, pp. 475-486
-
-
Markovich, D.C.1
Krapivinskij, G.B.2
Neznaiko, N.F.3
-
31
-
-
0029797365
-
Reconstitution of RNA polymerase
-
Fujita, N., Ishihama, A. Reconstitution of RNA polymerase. Meth. Enzymol. 273:121-130, 1996.
-
(1996)
Meth. Enzymol.
, vol.273
, pp. 121-130
-
-
Fujita, N.1
Ishihama, A.2
-
32
-
-
0023613953
-
Rapid and efficient site-specific mutagenesis without phenotypic selection
-
Kunkel, T.A., Roberts, K.J., Zakour, R.A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Meth. Enzymol. 154:367-382, 1987.
-
(1987)
Meth. Enzymol.
, vol.154
, pp. 367-382
-
-
Kunkel, T.A.1
Roberts, K.J.2
Zakour, R.A.3
-
33
-
-
0028997073
-
Structural map of the alpha subunit of Escherichia coli RNA polymerase: Structural domains identified by proteolytic cleavage
-
Negishi, T., Fujita, N., Ishihama, A. Structural map of the alpha subunit of Escherichia coli RNA polymerase: Structural domains identified by proteolytic cleavage. J. Mol. Biol. 248:723-728, 1995.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 723-728
-
-
Negishi, T.1
Fujita, N.2
Ishihama, A.3
-
34
-
-
0021100618
-
Determination of the promoter strength in the mixed transcription system: Promoters of lactose tryptophan and ribosomal protein L10 operon from Escherichia coli
-
Kajitani, M., Ishihama, A. Determination of the promoter strength in the mixed transcription system: Promoters of lactose tryptophan and ribosomal protein L10 operon from Escherichia coli. Nucl. Acids Res. 11:671-686, 1983.
-
(1983)
Nucl. Acids Res.
, vol.11
, pp. 671-686
-
-
Kajitani, M.1
Ishihama, A.2
-
35
-
-
0021112097
-
Determination of the promoter strength in the mixed transcription system. II. Promoters of ribosomal RNA, ribosomal protein S1 and recA protein operons from Escherichia coli
-
Kajitani, M., Ishihama, A. Determination of the promoter strength in the mixed transcription system. II. Promoters of ribosomal RNA, ribosomal protein S1 and recA protein operons from Escherichia coli. Nucl. Acids Res. 11:3873-3889, 1983.
-
(1983)
Nucl. Acids Res.
, vol.11
, pp. 3873-3889
-
-
Kajitani, M.1
Ishihama, A.2
-
36
-
-
0016761049
-
On the reactivity and role of sulfhydryl groups of Escherichia coli DNA dependent RNA polymerase
-
Daroczy, A., Damjanovich, S., Bot, J. On the reactivity and role of sulfhydryl groups of Escherichia coli DNA dependent RNA polymerase. Studia Biophys 48:203-208, 1975.
-
(1975)
Studia Biophys
, vol.48
, pp. 203-208
-
-
Daroczy, A.1
Damjanovich, S.2
Bot, J.3
-
37
-
-
0014691362
-
Multiple functional sites of Escherichia coli RNA polymerase
-
Ishihama, A., Hurwitz, J. Multiple functional sites of Escherichia coli RNA polymerase. J. Biol. Chem. 244:6680-6689, 1969.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 6680-6689
-
-
Ishihama, A.1
Hurwitz, J.2
-
38
-
-
0015526753
-
Subunits of ribonucleic acid polymerase in function and structure. I. Reversible dissociation of Escherichia coli ribonucleic acid polymerase
-
Ishihama, A. Subunits of ribonucleic acid polymerase in function and structure. I. Reversible dissociation of Escherichia coli ribonucleic acid polymerase. Biochemistry 11: 1250-1258, 1972.
-
(1972)
Biochemistry
, vol.11
, pp. 1250-1258
-
-
Ishihama, A.1
-
39
-
-
0018559603
-
Genetics of bacterial RNA polymerases
-
Yura, T., Ishihama, A. Genetics of bacterial RNA polymerases. Ann. Rev. Genet. 13:59-97, 1979.
-
(1979)
Ann. Rev. Genet.
, vol.13
, pp. 59-97
-
-
Yura, T.1
Ishihama, A.2
-
40
-
-
0028142648
-
Domain organization on RNA polymerase α-subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding
-
Blatter, E.E., Ross, W., Tang, H., Gourse, R.L., Ebright, R.H. Domain organization on RNA polymerase α-subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding. Cell 78:889-896, 1994.
-
(1994)
Cell
, vol.78
, pp. 889-896
-
-
Blatter, E.E.1
Ross, W.2
Tang, H.3
Gourse, R.L.4
Ebright, R.H.5
-
41
-
-
0028879825
-
Solution structure of the activator contact domain of the RNA polymerase α-subunit
-
Jeon, Y.H., Negishi, T., Shirakawa, M., Yamazaki, T., Fujita, N., Ishihama, A., Kyogoku, Y. Solution structure of the activator contact domain of the RNA polymerase α-subunit. Science 270:1495-1497, 1995.
-
(1995)
Science
, vol.270
, pp. 1495-1497
-
-
Jeon, Y.H.1
Negishi, T.2
Shirakawa, M.3
Yamazaki, T.4
Fujita, N.5
Ishihama, A.6
Kyogoku, Y.7
-
42
-
-
0031564644
-
Flexible linker in the RNA polymerase α subunit facilitates the independent motion of the C-terminal activator contact domain
-
Jeon, Y.H., Yamazaki, T., Otomo, T., Ishihama, A., Kyogoku, Y. Flexible linker in the RNA polymerase α subunit facilitates the independent motion of the C-terminal activator contact domain. J. Mol. Biol. 267:953-962, 1997.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 953-962
-
-
Jeon, Y.H.1
Yamazaki, T.2
Otomo, T.3
Ishihama, A.4
Kyogoku, Y.5
-
43
-
-
0031056544
-
The two α subunits of Escherichia coli RNA polymerase alpha subunit are asymmetrically arranged and contact with different halves of the DNA upstream element
-
Murakami, K., Kimura, M., Owens, J.T., Meares, C.F., Ishihama, A. The two α subunits of Escherichia coli RNA polymerase alpha subunit are asymmetrically arranged and contact with different halves of the DNA upstream element. Proc. Natl. Acad. Sci. USA 94:1709-1714, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1709-1714
-
-
Murakami, K.1
Kimura, M.2
Owens, J.T.3
Meares, C.F.4
Ishihama, A.5
-
44
-
-
0030867901
-
Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors
-
Murakami, K., Owens, J.T., Belyaeva, T.A., Meares, O.F., Busby, S.J.W., Ishihama, A. Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors. Proc. Natl. Acad. Sci. USA, 94:11274-11278, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11274-11278
-
-
Murakami, K.1
Owens, J.T.2
Belyaeva, T.A.3
Meares, O.F.4
Busby, S.J.W.5
Ishihama, A.6
|