Regulation of CaMV 35 S RNA translation is mediated by a stable hairpin in the leader

RNA

Volumn 4, Issue 1, 1998, Pages 101-111

  Hemmings Mieszczak, Maja ^a   Steger, Gerhard ^b   Hohn, Thomas ^a  

^a FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

^b HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

Pararetrovirus; Pseudoknot; Ribosome shunt; RNA structure; RNA structure function relationship; Structural transitions; TGGE; Translation initiation

Indexed keywords

TRANSFER RNA;

ARTICLE; BASE PAIRING; CAULIFLOWER MOSAIC VIRUS; GEL ELECTROPHORESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; REGULATORY MECHANISM; RIBOSOME; RNA CONFORMATION; RNA STRUCTURE; RNA TRANSLATION; STRUCTURE ACTIVITY RELATION; TRANSLATION INITIATION;

BASE SEQUENCE; CAULIMOVIRUS; CELL-FREE SYSTEM; ELECTROPHORESIS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; PROTEIN BIOSYNTHESIS; PROTOPLASTS; RNA, VIRAL; TRITICUM;

BRASSICA OLERACEA VAR. BOTRYTIS; CAULIFLOWER MOSAIC VIRUS;

EID: 0031984932     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (29)

1. Belsham GJ. 1992. Dual initiation sites of protein synthesis on foot-and-mouth disease virus RNA are selected following internal entry and scanning of ribosomes in vivo. EMBO J 11:1106-1110.
2. Curran J, Kolakofsky D. 1988. Scanning independent ribosomal initiation of thew sendai virus X protein. EMBO J 7:2869-2874.
3. Curran J, Kolakofsky D. 1989. Scanning independent ribosomal initiation of thew sendai virus X protein in vitro and in vivo. EMBO J 8:521-526.
4. Franck A, Guilley H, Jonard G, Richards K, Hirth L. 1980. Nucleotide sequence of cauliflower mosaic virus DNA. Cell 21:285-294.
5. Fütterer J, Gordon K, Bonneville JM, Sanfaçon H, Pisan B, Penswick J, Hohn T. 1988. The leading sequence of caulimovirus large RNA can be folded into a large stem-loop structure. Nucleic Acids Res 16:8377-8390.
6. Fütterer J, Gordon K, Pfeiffer P, Sanfaçon H, Pisan B, Bonneville J, Hohn T. 1989. Differential inhibition of downstream gene expression by the cauliflower mosaic virus 35S RNA leader. Virus Genes 3:45-55.
7. Fütterer J, Hohn T. 1991. Translation of the polycistronic mRNA in presence of the CaMV transactivator protein. EMBO J 10:3887-3896.
8. Fütterer J, Kiss-László Z, Hohn T. 1993. Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA. Cell 73:789-802.
9. Hemmings-Mieszczak M, Steger G, Hohn T. 1997. Alternative structures of the cauliflower mosaic virus 35 S RNA leader: Implications for viral expression and replication. J Mol Biol 267:1075-1088.
10. Hinnenbusch AG. 1994. Translational control of GCN4: An in vivo barometer of initiation-factory activity. Trends Biochem Sci 19:409-414.
11. Hull R, Covey SN. 1983. Does cauliflower mosaic virus replicate by reverse transcription? Trends Biochem Sci 8:119-121.
12. Jackson RJ, Hunt SL, Reynolds JE, Kaminski A. 1995. Cap-dependent and cap-independent translation: Operational distinctions and mechanistic interpretations. Curr Topics Microbiol Immunol 203:1-29.
13. Kaminski A, Howell MT, Jackson RJ. 1990. Initiation of encephalo-myocarditis virus RNA translation: The authentic initiation site is not selected by a scanning mechanism. EMBO J 9:3753-3759.
14. Kiss-László Z, Blanc S, Hohn T. 1995. Splicing of cauliflower mosaic virus 35S RNA is essential for viral infectivity. EMBO J 14:3552-3562.
15. Kozak M. 1989. The scanning model for translation: An update. J Cell Biol 108:229-241.
16. Kozak M. 1992. A consideration of alternative models for the initiation of translation in eukaryotes. Crit Rev Biochem Mol Biol 27:385-402.
17. Pelletier J, Sonenberg N. 1988. Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from polio-virus RNA. Nature 334:320-325.
18. Pietrzak M, Shillito M, Hohn T, Potrykus I. 1986. Expression in plants of two bacterial antibiotic resistance genes after protoplast transformation with a new plant expression vector. Nucleic Acids Res 14:5857-5868.
19. Riesner D, Steger G, Zimmat R, Owens RA, Wagenhöfer M, Hillen W, Vollbach S, Henco K. 1989. Temperature-gradient gel electrophoresis of conformational transitions, sequence variations, and protein-nucleic acid interactions. Electrophoresis 10:377-389.
20. Rothnie HM, Chapdelaine Y, Hohn T. 1994a. Pararetroviruses and retroviruses: A comparative review of viral structure and gene expression strategies. Adv Virus Res 44:1-67.
21. Rothnie HM, Reid J, Hohn T. 1994b. The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′'-end formation in plants. EMBO J 13:2200-2210.
22. Sachs AB, Sarnow P, Hentze MW. 1997. Starting at the beginning, middle, and end: Translation initiation in eukaryotes. Cell 89:831-838.
23. Sanfaçon H, Brodmann P, Hohn T. 1991. A dissection of the cauliflower mosaic virus polyadenylation signal. Genes & Dev 5:141-149.
24. Sanfaçon H, Hohn T. 1990. Proximity to the promoter inhibits recognition of cauliflower mosaic virus polyadenylation signal. Nature 346:81-84.
25. Schmidt-Puchta W, Dominguez D, Lewetag D, Hohn T. 1997. Plant ribosome shunting in vitro. Nucleic Acids Res 25:2854-2860.
26. Schmitz M, Steger G. 1992. Base-pair probability profiles of RNA secondary structures. Comp Appl Biosci 8:389-399.
27. Steger G, Hofmann H, Förtsch J, Gross HJ, Randles JW, Sänger HL, Riesner D. 1984. Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data. J Biomol Struct Dynam 2:543-571.
28. Yueh A, Schneider RJ. 1996. Selective translation initiation by ribosome jumping in adenovirus-infected and heat shocked cells. Genes & Dev 10:1557-1567.
29. Zuker M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.