Individual identification and paternity determination in chimpanzees (Pantroglodytes) using human short tandem repeat (STR) markers

International Journal of Primatology

Volumn 19, Issue 2, 1998, Pages 255-271

  Ely, John J ^a   Gonzalez, Daniel L ^a   Reeves Daniel, Amber ^a   Stone, William H ^a  

^a TRINITY UNIVERSITY   (United States)

Author keywords

Chimpanzees; DNA markers; Parentage testing; Population genetics; Short tandem repeats

Indexed keywords

DNA ANALYSIS; GENE LOCUS; GENETIC MARKER; HETEROZYGOSITY; IDENTIFICATION; POLYMERASE CHAIN REACTION; TRANSPOSABLE ELEMENT;

PAN TROGLODYTES;

EID: 0031982202     PISSN: 01640291     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020379531874     Document Type: Article

References (71)

1. Altmann, J., Alberts, S. C., Haines, S. A., Dubach, J., Muruthi, P., Coote, R., Geffen, E., Cheesman, D. J., Mututua, R. S., Saiyalel, S. N., Wayne, R. K., Lacy, R. C., and Bruford, M. W. (1996). Behavior predicts genetic structure in a wild primate group. Proc. Natl. Acad. Sci. 93: 5797-5801.
2. Archie, J. W. (1985). Statistical analysis of heterozygosity data: Independent sample comparisons. Evolution 39: 623-637.
3. Avise, J. C. (1994). Molecular Markers, Natural History and Evolution, Chapman and Hall, New York.
4. Bowcock, A. M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J. R., and Cavalli-Sforza, L. L. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457.
5. Chakraborty, R. (1992). Sample size requirements for addressing the population genetic issues of forensic use of DNA typing. Hum. Biol. 64: 141-159.
6. Chakravarti, A., and Li, C. C. (1983). The effect of linkage on paternity calculations. In Walker, R. H. (ed.), Inclusion Probabilities in Parentage Testing, American Association of Blood Banks, Arlington, VA, pp. 411-422.
7. Commission of Life Sciences of the National Research Council (1996). Guide for the Care and Use of Laboratory Animals, National Academy Press, Washington, DC.
8. Committee on DNA Forensic Science of the National Research Council (1996). The Evaluation of Forensic DNA Evidence, National Academy Press, Washington, DC.
9. Crouau-Roy, B., Service, S., Slatkin, M., and Friemer, N. (1997). A fine-scale comparison of human and chimpanzee genomes: Linkage, linkage disequilibrium and sequence analysis. Hum. Mol. Genet. 5: 1131-1137.
10. Deka, R., Chakraborty, R., and Ferrell, R. E. (1991). A population genetic study of six VNTR loci in three ethnically defined populations. Genomics 11: 83-92.
11. n repeats in chimpanzees. Genomics 22: 226-230.
12. n polymorphisms in world populations. Am. J. Hum. Genet. 56: 461-474.
13. Devlin, B., Risch, N., and Roeder, K. (1990). No excess of homozygosity at loci used for DNA fingerprinting. Science 249: 1416-1420.
14. Dib, C., Faure, S., Fizames, C., Samson, D., Drouot, N.. Vignal, A., Millasseau, P., Marc, S., Hazan, J., Seboun, E., Lathrop, M., Gyapay, G., Morissette, J., and Weissenbach, J. (1996). A comprehensive genetic linkage map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
15. Dubovsky, J., Sheffield, V. C., Duyk, G. M., and Weber, J. L. (1995). Sets of short tandem repeat polymorphisms for efficient linkage screening of the human genome. Hum. Mol. Genet. 4: 449-452.
16. Edwards, A., Civitello, A., Hammond, H. A., and Caskey, C. T. (1991). DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49: 746-756.
17. Edwards, A., Hammond, H. A., Jin, L., Caskey, C. T., and Chakraborty, R. (1992). Genetic variation at five trimeric and tetrameric tandem repeat loci in four human populations. Genomics 12: 241-253.
18. Ellegren, H., Primmer, C. R., and Sheldon, B. C. (1995). Microsatellite "evolution": Directionality or bias? Nature Genet. 11: 360-362.
19. Ely, J., and Ferrell, R. E. (1990). DNA "fingerprints" and paternity ascertainment in chimpanzees (Pan troglodytes). Zoo Biol. 9: 91-98.
20. Ely, J., and Ferrell, R. E. (1992). Use of genetic markers in the genetic management of chimpanzees. In Erwin, J., and Landon, J. L. (eds.), Chimpanzee Conservation and Public Health, Diagnon Corp. Rockville, MD, pp. 119-126.
21. Ely, J., Alford, P., and Ferrell, R. E. (1991). DNA "fingerprinting" and the genetic management of a captive chimpanzee population (Pan troglodytes). Am. J. Primatol. 24: 39-54.
22. Ely, J., Deka, R., Chakraborty, R., and Ferrell, R. E. (1992). Comparison of five tandem repeat loci between humans and chimpanzees. Genomics 14: 692-698.
23. Ely, J. J., Campbell, M. L., Gonzalez, D. L., and Stone, W. H. (1996). Successful application of PCR-amplified DNA markers for paternity determination in rhesus monkeys (Macaca mulatta) and chimpanzees (Pan troglodytes). Lab. Primate Newslett. 35: 1-4
24. Falconer, D. S., and Mackay, T. F. C. (1996). Introduction to Quantitative Genetics, Longman, Essex.
25. Garza, J. C., Slatkin, M., and Friemer, N. B. (1995). Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol. Biol. Evol. 12: 594-603.
26. Gagneux, P., Woodruff, D. S., and Boesch, C. (1997). Furtive mating in female chimpanzees. Nature 387: 358-359.
27. GDB™ Human Genome Datase (1990). Database online, Johns Hopkins University, Baltimore. Updated daily. Available from Internet: URL http://gdbwww.gdb.org/.
28. Gerloff, U., Shloterrer, C., Rassmann, K., Rambold, I., and Hohmann, G. (1995). Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus). Mol. Ecol. 4: 515-518.
29. Goldberg, T. L., and Ruvolo, M. (1997). Molecular phylogenetics and historical biogeography of east African chimpanzees. Biol. J. Linn. Soc. 61: 301-324.
30. Haig, S. M., Ballou, J. D., and Casna, N. J. (1994). Identification of kin structure among Guam rail founders: A comparison of pedigrees and DNA profiles. Mol. Ecol. 3: 109-119.
31. Hammond, H., Jin, L., Zhong, Y., Caskey, C. T., and Chakraborty, R. (1994). Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am. J. Hum. Genet. 55: 175-189.
32. Hedrick, P. W. (1985). Genetics of Populations, Jones and Bartlett, Boston.
33. Inoue, M., and Takenaka, O. (1993). Japanese macaque microsatellite PCR primers for paternity testing. Primates 34: 37-45.
34. Jeffreys, A. J., Wilson, V., and Thein, S. L. (1985). Individual-specific "fingerprints" of human DNA. Nature 316: 76-79.
35. King, M. C., and Wilson, A. C. (1975). Evolution at two levels in humans and chimpanzees. Science 188: 107-116.
36. Lee, P. C., Thornback, J., and Bennett, E. L. (1988). Threatened Primates of Africa: The IUCN Red Data Book, IUCN, Cambridge, UK.
37. Lynch, M. (1988). Estimation of relatedness by DNA fingerprinting. Mol. Biol. Evol. 5: 584-599.
38. Lynch, M. (1990). The similarity index and DNA fingerprinting. Mol. Biol. Evol. 7: 478-484.
39. MacCluer, J. W. (1993). Applications of pedigree analysis to animal models for complex diseases. In Sing, C. F., and Hanis, C. L. (eds.), Genetics of Cellular Individual, Family and Population Variability, Oxford University Press, New York, pp. 122-139.
40. Meng, L., Ely, J. J., Stouffer, R., and Wolf, D. (1997). Rhesus monkeys produced by nuclear transfer. Biol. Reprod. 57: 454-459.
41. Meyer, E., Wiegand, P., Rand, S. P., Kuhlmann, D., Brack, M., and Brinkmann, B. (1995). Microsatellite polymorphisms reveal phylogenetic relationships in primates. J. Mol. Evol. 41: 10-14.
42. Miller, S. A., Dykes, D. D., and Polesky, H. F. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 6: 1215.
43. Morin, P. A., and Woodruff, D. S. (1992). Paternity exclusion using multiple hypervariable microsatellite loci amplified from nuclear DNA of hair cells. In Martin, R. D., Dixson, A. F., and Wickings, E. J. (eds.), Paternity in Primates: Genetic Theories and Tests, Karger, Basel, pp. 63-81.
44. Morin, P. A., Moore, J. J., Chakraborty, R., Jin, L., Goodall, J., and Woodruff, D. S. (1994). Kin selection, social structure, gene flow and the evolution of chimpanzees. Science 265: 1193-1201.
45. Nei, M. (1987). Molecular Evolutionary Genetics, Columbia University Press, New York.
46. Nozawa, K., Shotake, T., Kawamoto, Y., and Tanabe, Y. (1982). Electrophoretically estimated genetic distance and divergence time between chimpanzee and man. Primates 23: 432-443.
47. Pascall, V. L., Bisol, G. D., Dobosz, M., d'Aloja, E., Paonessa, G., and Mereu, U. (1994). Chimpanzee DNA profiles on trial. Nature 367: 692-693.
48. Queller, D. C., and Goodnight, K. F. (1989). Estimating relatedness using genetic markers. Evolution 43: 258-275.
49. Rogers, J., Ruano, G., and Kidd, K. K. (1992). Variability in nuclear DNA among nonhuman primates: Application of molecular genetic techniques to intra- and inter-species genetic analyses. Am. J. Primatol. 27: 93-105.
50. Rogers, J., Witte, S. M., Kammerer, C. M., Hixson, J. E., and MacCluer, J. W. (1995). Linkage mapping in Papio baboons: Conservation of a syntenic group of six markers on human chromosome 1. Genomics 28: 251-254.
51. Rosenthal, R., and Rosnow, R. L. (1985). Contrast Analysis, Cambridge University Press, Cambridge.
52. Roychoudhury, A. K., and Nei, M. (1988). Human Polymorphic Genes: World Distribution, Oxford University Press, New York.
53. Rubinzstein, D. C., Amos, W., Leggo, J., Goodburn, S., Jain, S., Li, S.-H., Margolis, R. L., Ross, C. A., and Ferguson-Smith, M. A. (1995). Microsatellite evolution-evidence for directionality and variation in rate between species. Nature Genet. 10: 337-343.
54. Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual (3 vols.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
55. Schobert, L. (1990). North American Regional Chimpanzee Studbook, North Carolina Zoological Park, Asheboro.
56. Seal, U. S., and Flesness, N. (1986). Captive chimpanzee populations - Past, present, and future. In Benirschke, K. (ed.), Primates: The Road to Self-Sustaining Populations, Springer-Verlag, New York, pp. 47-55.
57. Sensabaugh, G. F. (1982). Biochemical markers of individuality. In Saferstein, R. (ed.), Forensic Science Handbook, Prentice-Hall, Englewood Cliffs, NJ, pp. 338-415.
58. Smith, D. G., Small, M. F., Ahlfors, C. E., Lorey, F. W., Stern, B. R., and Rolfs, B. K. (1984). In Hendricks, A. G. (ed.), Advances in Veterinary Science and Comparative Medicine, Vol. 28, Academic Press, Orlando, FL, pp. 1-24.
59. Smith, D. G., Rolfs, B., and Lorenz, J. (1992). A comparison of the success of electrophoretic methods and DNA fingerprinting for paternity testing in captive groups of rhesus macaques. In Martin, R. D., Dixson, A. F., and Wickings, E. J. (eds.), Paternity in Primates: Genetic Theories and Tests, Karger, Basel, pp. 32-52.
60. Stone, W. H., Treichel, R. C. S., and VandeBerg, J. L. (1987). Genetic significance of some common primate models in biomedical research. In: Animal Models: Assessing the Scope of Their Use in Biomedical Research, A. R. Liss, New York, pp. 73-93.
61. Stone, W. H., Ely, J. J., Manis, G. S., and VandeBerg, J. (1993). Classical genetic markers & DNA markers: A commensal marriage. Primates 34: 365-376.
62. Takenaka, O., Takasaki, H., Kawamoto, S., Arakawa, M., and Takenaka, A. (1993). Polymorphic microsatellite DNA amplification customized for chimpanzee paternity testing. Primates 34: 27-35.
63. VandeBerg, J. L. (1992). Biochemical markers and restriction fragment length polymorphisms in baboons: Their power for paternity exclusion. In Martin, R. D., Dixson, A. F., and Wickings, E. J. (eds.), Paternity in Primates: Genetic Theories and Tests, Karger, Basel, pp. 18-31.
64. Watanabe, Y., Sakazume, T., Kurosaki, K., Oota, H., Washio-Watanabe, K., and Ueda, S. (1996). Short tandem repeat polymorphisms in Japanese macaques: Their short repeat lengths and low informativeness. Mammal. Genome 7: 383-385.
65. Weber, J. L., and Wong, C. (1993). Mutation of human short tandem repeats. Hum. Mol. Genet. 2: 1123-1128.
66. Weir, B. S. (1992). Independence of VNTR alleles defined as fixed bins. Genetics 130: 873-887.
67. Weiss, M., Wilson, V., Chan, C., Turner, T., and Jeffreys, A. J. (1988). Application of DNA fingerprinting to Old World Monkeys. Am. J. Primatol. 16: 73-79.
68. Williams-Blangero, S. (1993). Research-oriented genetic management of nonhuman primate colonies. Lab. Anim. Sci. 43: 535-540.
69. Williams-Blangero, S., and Dyke, B. (1992). Genetic management of a chimpanzee colony. In Erwin, J., and Landon, J. L. (eds.), Chimpanzee Conservation and Public Health, Diagnon Corp., Rockville, MD, pp. 127-136.
70. Williams-Blangero, S., Butler, T., Brasky, K., and Murthy, K. K. (1994). Heritabilities of clinical chemical traits in chimpanzees. Lab. Anim. Sci. 44: 141-143.
71. Wise, C. A., Sraml, M., Rubinsztein, D. C., and Easteal, S. (1997). Comparative nuclear and mitochondrial genome diversity in humans and chimpanzees. Mol. Biol. Evol. 14: 707-716.