메뉴 건너뛰기




Volumn 36, Issue 4, 1998, Pages 235-241

Monte Carlo simulation of DNA strand-break induction in supercoiled plasmid pBR322 DNA from indirect effects

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DIFFUSION; DNA DAMAGE; DNA STRAND BREAKAGE; DNA SUPERCOILING; DOSE RESPONSE; IONIZING RADIATION; NONHUMAN; PHYSICS; PLASMID; RADIATION DOSE; SIMULATION; SYSTEM ANALYSIS;

EID: 0031981518     PISSN: 0301634X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004110050077     Document Type: Article
Times cited : (28)

References (47)
  • 2
    • 0027159202 scopus 로고
    • Evidence for induction of DNA double-strand breaks at paired radical sites
    • Prise KM, Davies S, Michael BD (1993) Evidence for induction of DNA double-strand breaks at paired radical sites. Radiat Res 134:102-106
    • (1993) Radiat Res , vol.134 , pp. 102-106
    • Prise, K.M.1    Davies, S.2    Michael, B.D.3
  • 4
    • 0027183669 scopus 로고
    • Energy deposition clusters in nanometer regions of charged-particle tracks
    • Michalik V (1993) Energy deposition clusters in nanometer regions of charged-particle tracks. Radiat Res 134:265-270
    • (1993) Radiat Res , vol.134 , pp. 265-270
    • Michalik, V.1
  • 5
    • 0028288912 scopus 로고
    • A stochastic treatment of radiation damage to DNA from indirect effects
    • Bardash M, Zaider M (1994) A stochastic treatment of radiation damage to DNA from indirect effects. Radiat Prot Dosim 52: 171-176
    • (1994) Radiat Prot Dosim , vol.52 , pp. 171-176
    • Bardash, M.1    Zaider, M.2
  • 6
    • 0028135445 scopus 로고
    • Modelling of radiation-induced DNA damage: The early physical and chemical event
    • Nikjoo H, O'Neill P, Terrissol M, Goodhead DT (1994) Modelling of radiation-induced DNA damage: the early physical and chemical event. Int J Radiat Biol 66:453-457
    • (1994) Int J Radiat Biol , vol.66 , pp. 453-457
    • Nikjoo, H.1    O'Neill, P.2    Terrissol, M.3    Goodhead, D.T.4
  • 8
    • 0029268003 scopus 로고
    • Strand break formation in plasmid DNA irradiated in aqueous solution: Effect of medium temperature and hydroxyl radical scavenger concentration
    • Tomita H, Kai M, Kusama T, Aoki Y (1995) Strand break formation in plasmid DNA irradiated in aqueous solution: effect of medium temperature and hydroxyl radical scavenger concentration. Jpn J Radiat Res 36:46-55
    • (1995) Jpn J Radiat Res , vol.36 , pp. 46-55
    • Tomita, H.1    Kai, M.2    Kusama, T.3    Aoki, Y.4
  • 9
    • 0030845071 scopus 로고    scopus 로고
    • Monte Carlo simulation of physico-chemical processes of liquid water radiolysis. the effects of dissolved oxygen and OH scavenger
    • Tomita H, Kai M, Kusama T, Ito A (1997) Monte Carlo simulation of physico-chemical processes of liquid water radiolysis. The effects of dissolved oxygen and OH scavenger. Radiat Environ Biophys 36:105-116
    • (1997) Radiat Environ Biophys , vol.36 , pp. 105-116
    • Tomita, H.1    Kai, M.2    Kusama, T.3    Ito, A.4
  • 13
    • 0028960975 scopus 로고
    • Electron energy-loss distribution in solid, dry DNA
    • LaVerne JA, Pimblott SM (1995) Electron energy-loss distribution in solid, dry DNA. Radiat Res 141:208-215
    • (1995) Radiat Res , vol.141 , pp. 208-215
    • LaVerne, J.A.1    Pimblott, S.M.2
  • 14
    • 0028556304 scopus 로고
    • Monte Carlo simulation of DNA strand breaks induced by monoenergetic electrons using higher-order structure models of DNA
    • Tomita H, Kai M, Kusama T, Aoki Y, Ito A (1994) Monte Carlo simulation of DNA strand breaks induced by monoenergetic electrons using higher-order structure models of DNA. Int J Radiat Biol 66:669-682
    • (1994) Int J Radiat Biol , vol.66 , pp. 669-682
    • Tomita, H.1    Kai, M.2    Kusama, T.3    Aoki, Y.4    Ito, A.5
  • 17
    • 0028401614 scopus 로고
    • Calculation of initial and primary yields in the radiolysis of water
    • Hill MA, Smith FA (1994) Calculation of initial and primary yields in the radiolysis of water. Radiat Phys Chem 43:265-280
    • (1994) Radiat Phys Chem , vol.43 , pp. 265-280
    • Hill, M.A.1    Smith, F.A.2
  • 21
    • 0027279063 scopus 로고
    • Probability of DNA knotting and the effective diameter of the DNA double helix
    • Rybenkov VV, Cozzarelli NR, Vologodskii AV (1993) Probability of DNA knotting and the effective diameter of the DNA double helix. Proc Natl Acad Sci USA 90:5307-5311
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 5307-5311
    • Rybenkov, V.V.1    Cozzarelli, N.R.2    Vologodskii, A.V.3
  • 23
    • 0018382593 scopus 로고
    • Complete nucleotide sequence of the Escherichia coli plasmid pBR322
    • Sutcliffe JG (1978) Complete nucleotide sequence of the Escherichia coli plasmid pBR322. Cold Spring Harbor Symp Quant Biol 43:77-90
    • (1978) Cold Spring Harbor Symp Quant Biol , vol.43 , pp. 77-90
    • Sutcliffe, J.G.1
  • 25
    • 84918833988 scopus 로고
    • Critical review of rate constants for reactions of hydrated electrons, hydrogen atoms and hydroxyl radicals (•OH/•O-) in aqueous solution
    • Buxton GV, Greenstock CL, Helman WP, Ross AB (1988) Critical review of rate constants for reactions of hydrated electrons, hydrogen atoms and hydroxyl radicals (•OH/•O-) in aqueous solution. J Phys Chem Ref Data 17:513-886
    • (1988) J Phys Chem Ref Data , vol.17 , pp. 513-886
    • Buxton, G.V.1    Greenstock, C.L.2    Helman, W.P.3    Ross, A.B.4
  • 26
    • 0011558142 scopus 로고
    • Asymptotic analysis of diffusion-influenced kinetics with a potential
    • Green NJB, Pimblott SM (1989) Asymptotic analysis of diffusion-influenced kinetics with a potential. J Phys Chem 93:5462-5467
    • (1989) J Phys Chem , vol.93 , pp. 5462-5467
    • Green, N.J.B.1    Pimblott, S.M.2
  • 27
    • 0027493778 scopus 로고
    • Spin-trapping detection of precursors of hydroxyl-radical-induced DNA damage: Identification of precursor radicals of DNA strand breaks in oligo(dC)10 and oligo(dT)10
    • Kuwabara M, Ohshima H, Sato F, Ono A, Matsuda A (1993) Spin-trapping detection of precursors of hydroxyl-radical-induced DNA damage: identification of precursor radicals of DNA strand breaks in oligo(dC)10 and oligo(dT)10. Biochemistry 32:10599-10606
    • (1993) Biochemistry , vol.32 , pp. 10599-10606
    • Kuwabara, M.1    Ohshima, H.2    Sato, F.3    Ono, A.4    Matsuda, A.5
  • 30
    • 0021369706 scopus 로고
    • Yields of radiation-induced main chain scission of poly U in aqueous solution: Strand break formation via base radicals
    • Lemaire DGE, Bothe E, Schulte-Frohlinde D (1984) Yields of radiation-induced main chain scission of poly U in aqueous solution: strand break formation via base radicals. Int J Radiat Biol 45:351-358
    • (1984) Int J Radiat Biol , vol.45 , pp. 351-358
    • Lemaire, D.G.E.1    Bothe, E.2    Schulte-Frohlinde, D.3
  • 31
    • 0021286558 scopus 로고
    • γ-Radiolysis of poly(U) in aqueous solution. the role of primary sugar and base radicals in the release of undamaged uracil
    • Deeble DJ, Sonntag C von (1984) γ-Radiolysis of poly(U) in aqueous solution. The role of primary sugar and base radicals in the release of undamaged uracil. Int J Radiat Biol 46:247-260
    • (1984) Int J Radiat Biol , vol.46 , pp. 247-260
    • Deeble, D.J.1    Von Sonntag, C.2
  • 32
    • 0002655254 scopus 로고
    • Electron track simulation for microdosimetry
    • Jenkins TM, Nelson WR, Rindi A (eds) Plenum, New York
    • Ito A (1988) Electron track simulation for microdosimetry. In: Jenkins TM, Nelson WR, Rindi A (eds) Monte Carlo transport of electrons and photons. Plenum, New York, pp 361-382
    • (1988) Monte Carlo Transport of Electrons and Photons , pp. 361-382
    • Ito, A.1
  • 33
    • 0027451899 scopus 로고
    • Irradiation of plasmid and phage DNa in water-alcohol mixtures: Strand breaks and lethal damage as a function of scavenger concentration
    • Klimczak U, Ludwig DC, Mark F, Rettberg P, Schulte-Frohlinde D (1993) Irradiation of plasmid and phage DNA in water-alcohol mixtures: strand breaks and lethal damage as a function of scavenger concentration. Int J Radiat Biol 64:497-510
    • (1993) Int J Radiat Biol , vol.64 , pp. 497-510
    • Klimczak, U.1    Ludwig, D.C.2    Mark, F.3    Rettberg, P.4    Schulte-Frohlinde, D.5
  • 34
    • 0027534751 scopus 로고
    • Variation of single-strand break yield with scavenger concentration for plasmid DNA irradiated in aqueous solution
    • Milligan JR, Aguilera JA, Ward JF (1993) Variation of single-strand break yield with scavenger concentration for plasmid DNA irradiated in aqueous solution. Radiat Res 133:151-157
    • (1993) Radiat Res , vol.133 , pp. 151-157
    • Milligan, J.R.1    Aguilera, J.A.2    Ward, J.F.3
  • 35
    • 0025805926 scopus 로고
    • Radiation chemical mechanisms of single- and double-strand break formation in irradiated SV40 DNA
    • Krisch RE, Flick MB, Trumbore CN (1991) Radiation chemical mechanisms of single- and double-strand break formation in irradiated SV40 DNA. Radiat Res 126:251-259
    • (1991) Radiat Res , vol.126 , pp. 251-259
    • Krisch, R.E.1    Flick, M.B.2    Trumbore, C.N.3
  • 36
    • 0026661425 scopus 로고
    • Aerobic radioprotection of pBR322 by thiols: Effect of thiol net charge upon scavenging of hydroxyl radicals and repair of DNA radicals
    • Zheng S, Newton GL, Ward JF, Fahey RC (1992) Aerobic radioprotection of pBR322 by thiols: effect of thiol net charge upon scavenging of hydroxyl radicals and repair of DNA radicals. Radiat Res 130:183-193
    • (1992) Radiat Res , vol.130 , pp. 183-193
    • Zheng, S.1    Newton, G.L.2    Ward, J.F.3    Fahey, R.C.4
  • 37
    • 0018791943 scopus 로고
    • Solvent-accessible surfaces of nucleic acids
    • Alden CJ, Kim SH (1979) Solvent-accessible surfaces of nucleic acids. J Mol Biol 132:411-434
    • (1979) J Mol Biol , vol.132 , pp. 411-434
    • Alden, C.J.1    Kim, S.H.2
  • 39
    • 0028903294 scopus 로고
    • Role of scavenger-denved radicals in the induction of double-strand and single-strand breaks in irradiated DNA
    • Ayene IS, Koch CJ, Krisch RE (1995) Role of scavenger-denved radicals in the induction of double-strand and single-strand breaks in irradiated DNA. Radiat Res 142:133-143
    • (1995) Radiat Res , vol.142 , pp. 133-143
    • Ayene, I.S.1    Koch, C.J.2    Krisch, R.E.3
  • 40
    • 0023636148 scopus 로고
    • Single- and double-strand break formation in DNA irradiated in aqueous solutions: Dependence on dose and scavenger concentration
    • Siddiqi MA, Bothe E (1987) Single- and double-strand break formation in DNA irradiated in aqueous solutions: dependence on dose and scavenger concentration. Radiat Res 112:449-463
    • (1987) Radiat Res , vol.112 , pp. 449-463
    • Siddiqi, M.A.1    Bothe, E.2
  • 41
    • 0029078215 scopus 로고
    • Electron spin resonance studies of radiation damage to DNA and to proteins
    • Symons MCR (1995) Electron spin resonance studies of radiation damage to DNA and to proteins. Radiat Phys Chem 45: 837-845
    • (1995) Radiat Phys Chem , vol.45 , pp. 837-845
    • Symons, M.C.R.1
  • 43
    • 37049102236 scopus 로고
    • Effect of ionizing radiation on deoxyribonucleic acid and related systems. Part 1. The role of oxygen
    • Boon PJ, Cullis PM, Symons MCR, Wren BW (1984) Effect of ionizing radiation on deoxyribonucleic acid and related systems. Part 1. The role of oxygen. J Chem Soc Perkin Trans II: 1393-1399
    • (1984) J Chem Soc Perkin Trans , vol.2 , pp. 1393-1399
    • Boon, P.J.1    Cullis, P.M.2    Mcr, S.3    Wren, B.W.4
  • 44
    • 0014220126 scopus 로고
    • Breakage of polynucleotide strands by disintegration of radiophosphorus atoms in DNA molecules and their repair. II. Simultaneous breakage of both strands
    • Tomizawa J, Ogawa H (1967) Breakage of polynucleotide strands by disintegration of radiophosphorus atoms in DNA molecules and their repair. II. Simultaneous breakage of both strands. J Mol Biol 30:7-15
    • (1967) J Mol Biol , vol.30 , pp. 7-15
    • Tomizawa, J.1    Ogawa, H.2
  • 45
    • 0029050296 scopus 로고
    • DNA strand breakage is correlated with unaltered base release after gamma irradiation
    • Henle ES, Roots R, Holley WR, Chatterjee A (1995) DNA strand breakage is correlated with unaltered base release after gamma irradiation. Radiat Res 143:144-150
    • (1995) Radiat Res , vol.143 , pp. 144-150
    • Henle, E.S.1    Roots, R.2    Holley, W.R.3    Chatterjee, A.4
  • 46
    • 0025872551 scopus 로고
    • Measurements of nucleic bases released after γ irradiation of DNA in solution in air
    • Roots R, Henle E, Holley WR, Chatterjee A (1991) Measurements of nucleic bases released after γ irradiation of DNA in solution in air. Radiat Res 125:288-292
    • (1991) Radiat Res , vol.125 , pp. 288-292
    • Roots, R.1    Henle, E.2    Holley, W.R.3    Chatterjee, A.4
  • 47
    • 0017889218 scopus 로고
    • Radiation damage to DNa in aqueous solution: A comparison of the response of the single-stranded form with that of the double-stranded form
    • Ward JF, Kuo I (1978) Radiation damage to DNA in aqueous solution: a comparison of the response of the single-stranded form with that of the double-stranded form. Radiat Res 75: 278-285
    • (1978) Radiat Res , vol.75 , pp. 278-285
    • Ward, J.F.1    Kuo, I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.