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Volumn 74, Issue 5, 1998, Pages 2504-2514

Remarks on discrete and continuous large-scale models of DNA dynamics

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0031976753     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77959-7     Document Type: Article
Times cited : (34)

References (35)
  • 1
    • 0021380354 scopus 로고
    • Multistep Brownian dynamics: Application to short wormlike chains
    • Allison, S. A., and J. A. McCammon. 1984. Multistep Brownian dynamics: application to short wormlike chains. Biopolymers. 23:363-375.
    • (1984) Biopolymers , vol.23 , pp. 363-375
    • Allison, S.A.1    McCammon, J.A.2
  • 2
    • 0028184699 scopus 로고
    • Kinetics of DNA supercoiling studied by Brownian dynamics simulation
    • Chirico, G., and J. Langowski. 1994. Kinetics of DNA supercoiling studied by Brownian dynamics simulation. Biopolymers. 34:415-433.
    • (1994) Biopolymers , vol.34 , pp. 415-433
    • Chirico, G.1    Langowski, J.2
  • 3
    • 0030259003 scopus 로고    scopus 로고
    • A new class of flexure-free torsional vibrations of annular rods
    • Coleman, B. D., M. Lembo, and I. Tobias. 1996. A new class of flexure-free torsional vibrations of annular rods. Meccanica. 31:565-575.
    • (1996) Meccanica , vol.31 , pp. 565-575
    • Coleman, B.D.1    Lembo, M.2    Tobias, I.3
  • 5
    • 0000008303 scopus 로고    scopus 로고
    • An impetus-striction simulation of the dynamics of an elastica
    • Dichmann, D. J., and J. H. Maddocks. 1996. An impetus-striction simulation of the dynamics of an elastica. J. Nonlinear Sci. 6:271-292.
    • (1996) J. Nonlinear Sci. , vol.6 , pp. 271-292
    • Dichmann, D.J.1    Maddocks, J.H.2
  • 6
    • 0040581612 scopus 로고
    • Kirchhoff's theory of rods
    • Dill, E. H. 1992. Kirchhoff's theory of rods. Arch. Hist. Exact Sci. 44:1-23.
    • (1992) Arch. Hist. Exact Sci. , vol.44 , pp. 1-23
    • Dill, E.H.1
  • 8
    • 0028956979 scopus 로고
    • Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules
    • Finzi, L., and J. Gelles. 1995. Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules. Science. 267:378-380.
    • (1995) Science , vol.267 , pp. 378-380
    • Finzi, L.1    Gelles, J.2
  • 9
    • 49349121146 scopus 로고
    • Gaussian stochastic processes in physics
    • Fox, R. F. 1978. Gaussian stochastic processes in physics. Phys. Rep. 48:181-283.
    • (1978) Phys. Rep. , vol.48 , pp. 181-283
    • Fox, R.F.1
  • 10
    • 0345563131 scopus 로고    scopus 로고
    • Combination of fluorescence-in-situ hybridization and scanning force microscopy for the ultrastructural characterization of defined chromatin regions
    • Fritzsche, W., L. Takacs, G. Vereb, J. Schlammadinger, and T. M. Jovin. 1996. Combination of fluorescence-in-situ hybridization and scanning force microscopy for the ultrastructural characterization of defined chromatin regions. J. Vacuum Sci. Tech. B. 14:1399-1404.
    • (1996) J. Vacuum Sci. Tech. B , vol.14 , pp. 1399-1404
    • Fritzsche, W.1    Takacs, L.2    Vereb, G.3    Schlammadinger, J.4    Jovin, T.M.5
  • 12
    • 0002803267 scopus 로고    scopus 로고
    • Nonlinear dynamics of filaments. I. Dynamical instabilities
    • Goriely, A., and M. Tabor. 1997. Nonlinear dynamics of filaments. I. Dynamical instabilities. Physica D. 105:20-44.
    • (1997) Physica D , vol.105 , pp. 20-44
    • Goriely, A.1    Tabor, M.2
  • 13
    • 84985720098 scopus 로고
    • Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains
    • Hagerman, P. J., and B. H. Zimm. 1981. Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains. Biopolymers. 20:1481-1502.
    • (1981) Biopolymers , vol.20 , pp. 1481-1502
    • Hagerman, P.J.1    Zimm, B.H.2
  • 15
    • 0030572145 scopus 로고    scopus 로고
    • Comparison of analytical theory with Brownian dynamics simulations for small linear and circular DNAs
    • Heath, P. J., J. A. Gebe, S. A. Allison, and J. M. Schurr. 1996. Comparison of analytical theory with Brownian dynamics simulations for small linear and circular DNAs. Macromolecules. 29:3583-3596.
    • (1996) Macromolecules , vol.29 , pp. 3583-3596
    • Heath, P.J.1    Gebe, J.A.2    Allison, S.A.3    Schurr, J.M.4
  • 16
    • 0030137174 scopus 로고    scopus 로고
    • Biological applications of the dynamics of twisted elastic rods
    • Klapper, I. 1996. Biological applications of the dynamics of twisted elastic rods. J. Comp. Phys. 125:325-337.
    • (1996) J. Comp. Phys. , vol.125 , pp. 325-337
    • Klapper, I.1
  • 19
    • 0000301498 scopus 로고    scopus 로고
    • Hydrodynamics of a DNA molecule in a flow-field
    • Larson, R. G., T. T. Perkins, D. E. Smith, and S. Chu. 1997. Hydrodynamics of a DNA molecule in a flow-field. Phys. Rev. E. 55:1794-1797.
    • (1997) Phys. Rev. E , vol.55 , pp. 1794-1797
    • Larson, R.G.1    Perkins, T.T.2    Smith, D.E.3    Chu, S.4
  • 20
    • 0041922171 scopus 로고    scopus 로고
    • Dynamics of thin twisted flux tubes
    • Longcope, D., and I. Klapper. 1997. Dynamics of thin twisted flux tubes. Astrophys. J. 488:443-453.
    • (1997) Astrophys. J. , vol.488 , pp. 443-453
    • Longcope, D.1    Klapper, I.2
  • 22
    • 0028375446 scopus 로고
    • Bending and twisting elasticity of DNA
    • Marko, J. F., and E. D. Siggia. 1994. Bending and twisting elasticity of DNA. Macromolecules. 27:981-988.
    • (1994) Macromolecules , vol.27 , pp. 981-988
    • Marko, J.F.1    Siggia, E.D.2
  • 23
    • 0001503605 scopus 로고
    • The reversibility and the entropy production of Markov processes
    • Qian, M. P., M. Qian, and G. L. Gong. 1991. The reversibility and the entropy production of Markov processes. Contemp. Math. 118:255-261.
    • (1991) Contemp. Math. , vol.118 , pp. 255-261
    • Qian, M.P.1    Qian, M.2    Gong, G.L.3
  • 24
    • 0001751511 scopus 로고
    • Solvent effects on supercoiled DNA dynamics explored by Langevin dynamics simulations
    • Ramachandran, G., and T. Schlick. 1995. Solvent effects on supercoiled DNA dynamics explored by Langevin dynamics simulations. Phys. Rev. E. 51:6188-6203.
    • (1995) Phys. Rev. E , vol.51 , pp. 6188-6203
    • Ramachandran, G.1    Schlick, T.2
  • 25
    • 0016382119 scopus 로고
    • Flexibility of DNA
    • Schellman, J. A. 1974. Flexibility of DNA. Biopolymers. 13:217-226.
    • (1974) Biopolymers , vol.13 , pp. 217-226
    • Schellman, J.A.1
  • 26
    • 0019023529 scopus 로고
    • The flexibility of DNA. I. Thermal fluctuations
    • Schellman, J. A. 1980. The flexibility of DNA. I. Thermal fluctuations. Biophys. Chem. 11:321-328.
    • (1980) Biophys. Chem. , vol.11 , pp. 321-328
    • Schellman, J.A.1
  • 27
    • 0029066852 scopus 로고
    • Modeling superhelical DNA: Recent analytical and dynamic approaches
    • Schlick, T. 1995. Modeling superhelical DNA: recent analytical and dynamic approaches. Curr. Opin. Struct. Biol. 5:245-262.
    • (1995) Curr. Opin. Struct. Biol. , vol.5 , pp. 245-262
    • Schlick, T.1
  • 28
    • 0027961109 scopus 로고
    • The influence of salt on the structure and energetics of supercoiled DNA
    • Schlick, T., B. Li, and W. K. Olson. 1994. The influence of salt on the structure and energetics of supercoiled DNA. Biophys. J. 67:2146-2166.
    • (1994) Biophys. J. , vol.67 , pp. 2146-2166
    • Schlick, T.1    Li, B.2    Olson, W.K.3
  • 29
    • 0022086510 scopus 로고
    • Effect of anisotropic bending rigidity and finite twisting rigidity on statistical properties of DNA model filaments
    • Schurr, J. M. 1985. Effect of anisotropic bending rigidity and finite twisting rigidity on statistical properties of DNA model filaments. Biopolymers. 24:1233-1246.
    • (1985) Biopolymers , vol.24 , pp. 1233-1246
    • Schurr, J.M.1
  • 30
    • 0031013815 scopus 로고    scopus 로고
    • Optical mapping approaches to molecular genomics
    • Schwartz, D. C., and A. Samad. 1997. Optical mapping approaches to molecular genomics. Curr. Opin. Biotechnol. 8:70-74.
    • (1997) Curr. Opin. Biotechnol. , vol.8 , pp. 70-74
    • Schwartz, D.C.1    Samad, A.2
  • 31
    • 0027685324 scopus 로고
    • A survey of attitude representations
    • Shuster. M. D. 1993. A survey of attitude representations. J. Astronaut. Sci. 41:439-517.
    • (1993) J. Astronaut. Sci. , vol.41 , pp. 439-517
    • Shuster, M.D.1
  • 32
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith, S. B., Y. J. Cui, and C. Bustamante. 1996. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science. 271:795-799.
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.J.2    Bustamante, C.3
  • 33
    • 0020838451 scopus 로고
    • Temperature dependence of the dynamic light scattering of linear φ29 DNA: Implications for spontaneous opening of the double helix
    • Wilcoxon, J., and J. M. Schurr. 1983. Temperature dependence of the dynamic light scattering of linear φ29 DNA: implications for spontaneous opening of the double helix. Biopolymers. 22:2273-2321.
    • (1983) Biopolymers , vol.22 , pp. 2273-2321
    • Wilcoxon, J.1    Schurr, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.