Quasispecies evolution of a hypervariable region of the feline calicivirus capsid gene in cell culture and in persistently infected cats

Journal of General Virology

Volumn 79, Issue 1, 1998, Pages 1-10

  Radford, Alan D ^a   Turner, Phillip C ^a   Bennett, Malcolm ^a   McArdle, Frank ^a   Dawson, Susan ^a   Glenn, Mark A ^a   Williams, Russell A ^a   Gaskell, Rosalind M ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; EPITOPE;

AMINO ACID SEQUENCE; ANTIGENICITY; ARTICLE; CALICIVIRUS; CELL CULTURE; CONSENSUS SEQUENCE; CONTROLLED STUDY; GENETIC HETEROGENEITY; IMMUNE RESPONSE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PERSISTENT VIRUS INFECTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS CAPSID; VIRUS GENE; VIRUS REPLICATION;

ANIMALIA; CALICIVIRIDAE; DNA VIRUSES; FELIDAE; FELINE CALICIVIRUS; FELIS CATUS; MIRIDAE; RNA VIRUSES;

EID: 0031975739     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-79-1-1     Document Type: Article

References (50)

1. Adami, C., Pooley, J., Glomb, J., Stecker, E., Fazal, F., Fleming, J. O. & Baker, S. C. (1995). Evolution of mouse hepatitis virus (MHV) during chronic infection: quasispecies nature of the persisting MHV RNA. Virology 209, 337-346.
2. 3) inhibit binding and infection of foot-and-mouth disease virus to cultured cells. Journal of Virology 69, 2664-2666.
3. Carter, M. J., Milton, I. D., Meanger, J., Bennett, M., Gaskell, R. M. & Turner, P.C. (1992). The complete nucleotide sequence of feline calicivirus. Virology 190, 443-448.
4. Chen, M., Harty, R. N., Zhao, Y., Holden, V. R. & O'Callaghan, D. J. (1996). Expression of an equine herpesvirus-1 ICP22/ICP27 hybrid protein encoded by defective interfering particles associated with persistent infection. Journal of Virology 70, 313-320.
5. Clements, J. E., D'Antonio, N. & Narayan, O. (1982). Genomic changes associated with antigenic variation of visna virus. II. Common nucleotide sequence changes detected in variants from independent isolations. Journal of Molecular Biology 158, 415-434.
6. Courts, A. J., Dawson, S., Willoughby, K. & Gaskell, R. M. (1994). Isolation of feline respiratory viruses from clinically healthy cats at UK cat shows. Veterinary Record 135, 555-556.
7. Cubitt, D., Bradley, D. W., Carter, M. J., Chiba, S., Estes, M. K., Saif, L. J., Schaffer, F. L., Smith, A. W., Studdert, M. J. & Thiel, H. J. (1995). In Virus Taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses, pp. 359-363. Edited by F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo & M. D. Summers. Vienna & New York: Springer-Verlag.
8. Dawson, S., McArdle, F., Bennett, M., Carter, M., Milton, I. P., Turner, P., Meanger, J. & Gaskell, R. M. (1993). Typing of feline calicivirus isolates from different clinical groups by virus neutralisation tests. Veterinary Record 133, 13-17.
9. Dawson, S., Smyth, N. R., Bennett, M., Gaskell, R. M., McCracken, C. M., Brown, A. & Gaskell, C. J. (1991). Effect of primary-stage feline immunodeficiency virus infection on subsequent feline calicivirus vaccination and challenge in cats. AIDS 5, 747-750.
10. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
11. Domingo, E., Díez, J., Martínez, M. A., Hernández, J., Holgún, A., Borrego, B. & Mateu, M. G. (1993). New observations on antigenic diversifications of RNA viruses. Antigenic variation is not dependent on immune selection. Journal of General Virology 74, 2039-2045.
12. Endo, T., Ikeo, K. & Gojobori, T. (1996). Large-scale search for genes on which positive selection may operate. Molecular Biology and Evolution 13, 685-690.
13. Felsenstein, J. (1989). PHYLIP: phylogenetic inference package (version 3.2). Cladistics 5, 164-166.
14. Gaskell, R. M. & Dawson, S. (1994). Viral-induced upper respiratory tract disease. In Feline Medicine and Therapeutics, 2nd edn, pp. 453-472. Edited by E. A. Chandler, C. J. Gaskell & R. M. Gaskell. Oxford: Blackwell.
15. Gould, A. R., Kattenbelt, J. A., Lenghaus, C., Morissy, C., Chamberlain, T., Collins, B. J. & Westbury, H. A. (1997). The complete nucleotide sequence of rabbit haemorrhagic disease virus (Czech strain V351): use of polymerase chain reaction to detect replication in Australian vertebrates and analysis of viral population sequence variation. Virus Research 47, 7-17.
16. Guiver, M., Littler, E., Caul, E. O. & Fox, A. J. (1992). The cloning, sequencing and expression of a major antigenic region from the feline calicivirus capsid protein. Journal of General Virology 73, 2429-2433.
17. Harbour, D. A., Howard, P.E. & Gaskell, R. M. (1991). Isolation of feline calicivirus and feline herpesvirus from domestic cats 1980 to 1989. Veterinary Record 128, 77-80.
18. Holland, J. J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S. & VandePol, S. (1982). Rapid evolution of RNA genomes. Science 215, 1577-1585.
19. Holland, J. H. (1990). Defective viral genomes. In Virology, 2nd edn, pp. 151-165. Edited by B. N. Fields, D. M. Knipe, R. M. Chanock, M. S. Hirsch, J. L. Melnick, T. P. Monath & B. Roizman. New York: Raven Press.
20. Jensen, M. & Coates, S. R. (1976). Defective interfering particles of feline calicivirus. Abstracts of the Annual Meeting of the American Society for Microbiology S41, 211.
21. Johnson, R. P. (1992). Antigenic change in feline calicivirus during persistent infection. Canadian Journal of Veterinary Research 56, 326-330.
22. Knowles, J. O. (1988). Studies on feline calicivirus with particular reference to chronic stomatitis in the cat. PhD thesis, Liverpool University, UK.
23. Knowles, J. O., McArdle, F., Dawson, S., Carter, S. D., Gaskell, C. J. & Gaskell, R. M. (1991). Studies on the role of feline calicivirus in chronic stomatitis in cats. Veterinary Microbiology 27, 295-219.
24. Kumar, U., Monjardino, J. & Thomas, H. C. (1994). Hypervariable region of hepatitis C virus envelope glycoprotein (E2/NS1) in an agammaglobulinemic patient. Gastroenterology 106, 1072-1075.
25. Martell, M., Esteban, J. I., Quer, J., Genesc-, J., Weiner, A., Esteban, R., Guardia, J. & Gómez, J. (1992). Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. Journal of Virology 66, 3225-3229.
26. Mazza, C., Puoti, M., Ravaggi, A., Castelnuovo, F., Albertini, A. & Cariani, E. (1996). Molecular analysis of mixed infection with hepatitis C virus and human immunodeficiency virus in a patient infected simultaneously. Journal of Medical Virology 50, 276-282.
27. Milton, I. D., Turner, J., Teelan, A., Gaskell, R., Turner, P. C. & Carter, M. J. (1992). Location of monoclonal antibody binding sites in the capsid protein of feline calicivirus. Journal of General Virology 73, 2435-2439.
28. Neill, J. D. (1992). Nucleotide sequence of the capsid protein gene of two serotypes of San Miguel sea lion virus: identification of conserved and non-conserved amino acid sequences among calicivirus sequences. Virus Research 24, 211-222.
29. Odeberg, J., Yun, Z., Sönnerborg, A., Bjøro, K., Uhlén, M. & Lundeberg, J. (1997). Variation of hepatitis C virus hypervariable region 1 in immunocompromised patients. Journal of Infectious Diseases 175, 938-943.
30. O'Hara, P. J., Nichol, S. T., Horodyski, F. M. & Holland, J. J. (1984). Vesicular stomatitis defective interfering particles can contain extensive genomic sequence rearrangements and base substitutions. Cell 36, 915-924.
31. Pedersen, N. C. & Hawkins, K. F. (1995). Mechanisms of persistence of acute and chronic feline calicivirus infections in the face of vaccination. Veterinary Microbiology 47, 141-156.
32. Perrault, J. (1981). Origin and replication of defective interfering particles. Current Topics in Microbiology and Immunology 93, 152-209.
33. Phillips, R. E., Rowland-Jones, S., Nixon, D. F., Gotch, F. M., Edwards, J. P., Ogunlesi, A. O., Elvin, J. G., Rothbard, J. A., Bangham, C. R. M., Rizza, C. R. & McMichael, A. J. (1991). Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition. Nature 354, 453-459.
34. Povey, R. C, Wardley, R. C. & Jessen, H. (1973). Feline picornavirus infection: the in vivo carrier state. Veterinary Record 92, 224-229.
35. Radford, A. D., Bennett, M., McArdle, F., Dawson, S., Turner, P. C., Glenn, M. A. & Gaskell, R. M. (1997). The use of sequence analysis of a feline calicivirus (FCV) hypervariable region in the epidemiological investigation of FCV related disease and vaccine failures. Vaccine 15, 1451-1458.
36. Rossi, M. S., Sadir, A. M., Schudel, A. A. & Palma, G. L. (1988). The detection of foot and mouth disease virus with DNA probes in bovine oesophageal-pharyngeal fluids. Archives of Virology 99, 67-74.
37. Saïb, A., Koken, M. H. M., van der Spek, P., Périès, J. & de Thé, H. (1995). Involvement of a spliced and defective human foamy virus in the establishment of chronic infection. Journal of Virology 69, 5261-5268.
38. Salinovich, O., Payne, S. L., Montelaro, R. C., Hussain, K. A., Issel, C. J. & Schnorr, K. L. (1986). Rapid emergence of novel antigenic and genetic variants of equine infectious anemia virus during persistent infection. Journal of Virology 57, 71-80.
39. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5467.
40. Seal, B. S. (1994). Analysis of capsid protein gene variation among divergent isolates of feline calicivirus. Virus Research 33, 39-53.
41. Seal, B. S., Ridpath, J. F. & Mengeling, W. L. (1993). Analysis of feline calicivirus capsid protein genes: identification of variable antigenic determinant regions of the protein. Journal of General Virology 74, 2519-2524.
42. Shin, Y.-S., Tohya, Y., Oshikamo, R., Kawaguchi, Y., Tomonaga, K., Miyazawa, T., Kai, C. & Mikami, T. (1993). Antigenic analysis of feline calicivirus capsid precursor protein and its polypeptides produced in a mammalian cDNA expression system. Virus Research 30, 17-26.
43. Tohya, Y., Yokoyama, N., Maeda, K., Kawaguchi, Y. & Mikami, T. (1997). Mapping of antigenic sites involved in neutralization on the capsid protein of feline calicivirus. Journal of General Virology 78, 303-305.
44. van Doorn, L.-J., Capriles, I., Maertens, G., DeLeys, R., Murray, K., Kos, T., Schellekens, H. & Quint, W. (1995). Sequence evolution of the hypervariable region in the putative envelope region E2/NS1 of hepatitis C virus is correlated with specific humoral immune responses. Journal of Virology 69, 773-778.
45. Wardley, R. C. (1974). Studies on feline calicivirus with particular reference to persistent infections. PhD thesis, University of Bristol, UK.
46. Wardley, R. C. (1976). Feline calicivirus carrier state: a study of the host/virus relationship. Archives of Virology 52, 243-249.
47. Wardley, R. C. & Povey, R. C. (1977). The clinical disease and patterns of excretion associated with three different strains of feline calicivirus. Research in Veterinary Science 23, 7-14.
48. Wardley, R. C., Gaskell, R. M. & Povey, R. C. (1974). Feline respiratory viruses - their prevalence in clinically healthy cats. Journal of Small Animal Practice 15, 579-586.
49. Weiner, A. J., Geysen, H. M., Christopherson, C., Hall, J. E., Mason, T. J., Saracco, G., Bonino, F., Crawford, K., Marion, C. D., Crawford, K. A., Brunetto, M., Barr, P. J., Miyamura, T., McHutchinson, J. & Houghton, M. (1992). Evidence for immune selection of hepatitis C virus (HCV) putative envelope glycoprotein variants: potential role in chronic HCV infections. Proceedings of the National Academy of Sciences, USA 89, 3468-3472.
50. Willett, B. J., Flynn, J. N. & Hosie, M. J. (1997). FIV infection of the domestic cat: an animal model for AIDS. Immunology Today 18, 182-189.