Patterns of Y and X chromosome DNA sequence divergence during the felidae radiation

Genetics

Volumn 148, Issue 3, 1998, Pages 1245-1255

  Slattery, Jill Pecon ^a   O'Brien, Stephen J ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL EXPERIMENT; ARTICLE; CAT; DNA SEQUENCE; EVOLUTION; FEMALE; INTRON; MALE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEX CHROMOSOME; SPECIES DIFFERENTIATION; X CHROMOSOME; Y CHROMOSOME;

ANIMALS; CARNIVORA; CATS; DNA-BINDING PROTEINS; EVOLUTION, MOLECULAR; INTRONS; MUTAGENESIS; PHYLOGENY; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS; VARIATION (GENETICS); X CHROMOSOME; Y CHROMOSOME;

ANIMALIA; FELIDAE; FELIS CATUS; MAMMALIA;

EID: 0031972376     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (43)

1. BIANCHI, N., M. BIANCHI, P. PAMILIO, L. VIDAL-RIOJA and A. DE LA CHAPELLE, 1992 Evolution of zinc finger-Y and zinc finger-X genes in oryzomyne-akodontine rodents (Cricetidae). J. Mol. Evol. 34: 54-61.
2. CHANG, B. H.-J., L. C. SHIMMIN, S.-K. SHYUE, D. HEWETT-EMMETT and W.-H. LI, 1994 Weak male-driven molecular evolution in rodents. Proc. Natl. Acad. Sci. USA 91: 827-831.
3. CHANG, B. H.-J., and W.-H. LI, 1995 Estimating the intensity of male-driven evolution in rodents by using x-linked and y-linked Ube 1 genes and pseudogenes. J. Mol. Evol. 40: 70-77.
4. CHARLESWORTH, B., 1978 Model of Y chromosomes and dosage compensation. Proc. Natl. Acad. Sci. USA 75: 5618-5622.
5. CHARLESWORTH, B., 1991 The evolution of sex chromosomes. Science 251: 1030-1033.
6. CHARLESWORTH, B., 1993 More mutations in males? Curr. Biol. 3: 466-467.
7. COLLIER, G. E., and S. J. O'BRIEN, 1985 A molecular phylogeny of the Felidae: Immunological distance. Evolution 39: 437-487.
8. DORIT, R. L., H. AKASHI and W. GILBERT, 1995 Absence of polymorphism at the ZFY locus on the human Y chromosome. Science 268: 1183-1185.
9. FELSENSTEIN, J., 1993 Phylogeny inference package (PHYLIP), version 3.5. University of Washington, Seattle, WA.
10. GENETICS COMPUTER GROUP, 1994 Program manual for the Wisconsin Package version 8. Genetics Computer Group, Madison, WI.
11. GRAVES, J. A. M., 1995 The origin and function of the mammalian Y chromosome and Y-borne genes - an evolving understanding. Bioessays 17: 311-320.
12. HALDANE, J. B. S., 1947 The mutation rate of the gene for haemophilia, and its segregation ratios in males and females. Ann. Eugen. 13: 262-271.
13. HILLIS, D., and J. BULL, 1993 An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42: 182-192.
14. HUANG, W., B. H.-J. CHANG, X. Gu, D. HEWETT-EMMETT and W.-H. LI, 1997 Sex differences in mutation rate in higher primates estimated from AMG intron sequences. J. Mol. Evol. 44: 463-465.
15. JANCZEWSKI, D. N., W. S. MODI, J. C. STEPHENS and S. J. O'BRIEN, 1995 Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the panthcrine lineage of Felidae. Mol. Biol. Evol. 12: 690-707.
16. JOHNSON, W. E., and S. J. O'BRIEN, 1997 Phylogenetic reconstruction of the Felidae using 16S rRNA and Nadh-5 mitochondrial genes. J. Mol. Evol. 44: S98-S116.
17. JOHNSON, W. E., P. A. DRATCH, J. S. MARTENSON and S. J. O'BRIEN, 1996 Resolution of recent radiations within three evolutionary lineages of Felidae using mitochondrial restriction fragment length polymorphism variation. J. Mammal. Evol. 3: 97-120.
18. KUMAR, S., K. TAMURA and M. NEI. 1993 MEGA: Molecular evolutionary genetics analysis, version 1.01. The Pennsylvania State University, University Park, PA.
19. LANFEAR, J., and P. W. H. HOLLAND, 1991 The molecular evolution of ZFY-related genes in birds and mammals. J. Mol. Evol. 32: 310-315.
20. LI, W.-H., and D. GRAUR, 1991 Fundamentals of Molecular Evolution. Sinauer, Sunderland, MA.
21. LOPEZ, J. V., M. CULVER, J. C. STEPHENS, W. E. JOHNSON and S. J. O'BRIEN, 1997 Accepted rates of nuclear and cytoplasmic mitochondrial sequence divergence in mammals. Mol. Biol. Evol. 14: 277-286.
22. MARDON, G., and D. C. PAGE, 1989 The sex-determining region of the mouse Y chromosome encodes a protein with a highly acidic domain and 13 zinc fingers. Cell 56: 765-770.
23. MARDON, G., R. MOSHER, C. M. DISTECHE, Y. NISHIOKA, A. MCLAREN et al., 1989 Duplication, deletion, and polymorphism in the sex-determining region of the mouse Y chromosome. Science 243: 78-80.
24. MASUDA, R. M., J. V. LOPEZ, J. PECON SLATTERY, N. YUHKI and S. J. O'BRIEN, 1996 Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in Felidae: Ocelot and domestic cat lineages. Mol. Phyl. Evol. 6: 351-365.
25. MCVEAN, G. T., and L. D. HURST, 1997 Evidence for a selectively favourable reduction in the mutation rate of the X chromosome. Nature 386: 388-392.
26. MIYATA, T., H. HAYASHIDA, K. KUMA, K. MITSUYASU and T. YASUNAGA, 1987 Male-driven molecular evolution: A model and nucleotide sequence analysis. Cold Spring Harbor Symp. Quant. Biol. 52: 863-867.
27. MODI, W. S., and S. J. O'BRIEN, 1988 Quantitative cladistic analysis of chromosomal banding among species in three orders of mammals: Hominoid primates, felids and arvicolid rodents, pp. 215-242 in Chrmosome Structure and Function, edited by J. P. GUSTAFSON and R. ARPELS. Plenum Press, New York.
28. NEEDLEMAN, S. B., and C. D. WUNSCH, 1970 A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48: 443-453.
29. O'BRIEN, S. J., G. E. COLLIER, R. E. BENVENISTE, W. G. NASH, A. K. NEWMAN et al., 1987 Setting the molecular clock in Felidae: The great cats, Panthers, pp. 10-27 in Tigers of the World, edited by R. L. TILSEN and U. S. SEAL. Noyes, Park Ridge, NJ.
30. PAGE, D. C., R. MOSHER, E. M. SIMPSON, E. M. C. FISHER, G. MARDON et al., 1987 The sex-determining region of the human Y chromosome encodes a finger protein. Cell 51: 1091-1104.
31. PALMER, M. S., P. BERTA, A. SINCLAIR, B. PYM and P. N. GOODFELLOW, 1990 Comparison of human ZFY and ZFX transcripts. Proc. Natl. Acad. Sci. USA 87: 1681-1685.
32. PECON SLATTERY, J., W. E. JOHNSON, D. GOLDMAN and S. J. O'BRIEN, 1994 Phylogenetic reconstruction of South American felids defined by protein electrophoresis. J. Mol. Evol. 39: 296-305.
33. RICK, W. R., 1996 Evolution of the Y sex chromosome in animals. Bioscience 46: 331-343.
34. SCHNEIDER-GADICKE, A., P. BEER-ROMERA, L. G. BROWN, G. MARDON, S.-W. LUOH et al., 1989a Putative transcription activator with alternative isoforms encoded by human ZFX gene. Nature 342: 708-711.
35. SCHNEIDER-GADICKE, A., P. BEER-ROMERO, L. G. BROWN, R. NUSSBAUM and D. C. PAGE, 1989b ZFX has a gene structure similar to ZFY, the putative human sex determinant, and escapes X inactivation. Cell 57: 1247-1258.
36. SHIMMIN, L., B. H.-J. CHANG and W.-H. LI, 1993a Male-driven evolution of DNA sequences. Nature 362: 745-747.
37. SHIMMIN, L., B. H.-J. CHANG, D. HEWETT-EMMETT and W.-H. LI, 1993b Potential problems in estimating the male-to-female mutation rate ratio from DNA sequence data. J. Mol. Evol. 37: 160-166.
38. SHIMMIN, L., B. H.-J. CHANG and W.-H. LI, 1994 Contrasting rates of nucleotide substitution in the x-linked and y-linked zinc finger genes. J. Mol. Evol. 39: 569-578.
39. SINCLAIR, A. H., J. W. FOSTER, J. A. SPENCER, D. C. PAGE, M. PALMER et al., 1988 Sequences homologous to ZFY, a candidate for human sex-determining gene, are autosomal in marsupials. Nature 333: 780-783.
40. STEINEMANN, M., and S. STEINEMANN, 1992 Degenerating Y chromosome of Drosophila miranda: a trap for retroposons. Proc. Natl. Acad. Sci. USA 89: 7591-7595.
41. TAJIMA, F., and M. NEI, 1984 Estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 10: 677-688.
42. WATSON, J. M., C. FROST, J. A. SPENCER and J. A. MARSHALL GRAVES, 1993 Sequences homologous to the human X- and Y-borne zinc finger protein genes (ZFX/Y) are autosomal in monotreme mammals. Genomics 15: 317-322.
43. WOLFE, K. H., and P. M. SHARP, 1993 Mammalian gene evolution: nucleotide sequence divergence between mouse and rat. J. Mol. Evol. 37: 441-446.