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Volumn 64, Issue 1, 1998, Pages 265-272

Fingerprinting of cyanobacteria based on PCR with primers derived from short and long tandemly repeated repetitive sequences

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; REPETITIVE DNA;

EID: 0031965094     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.64.1.265-272.1998     Document Type: Article
Times cited : (79)

References (38)
  • 1
    • 0027068323 scopus 로고
    • The Nostoc-Gunnera symbiosis. Trensley Review no. 42
    • Bergman, B., C. Johansson, and E. Söderbäck. 1992. The Nostoc-Gunnera symbiosis. Trensley Review no. 42. New Phytol. 122:379-400.
    • (1992) New Phytol. , vol.122 , pp. 379-400
    • Bergman, B.1    Johansson, C.2    Söderbäck, E.3
  • 2
    • 0030157006 scopus 로고    scopus 로고
    • Chemical signalling in cyanobacterial-plant symbioses
    • Bergman, B., A. Matveyev, and U. Rasmussen. 1996. Chemical signalling in cyanobacterial-plant symbioses. Trends Plant Sci. 1:191-197.
    • (1996) Trends Plant Sci. , vol.1 , pp. 191-197
    • Bergman, B.1    Matveyev, A.2    Rasmussen, U.3
  • 3
    • 0016231913 scopus 로고
    • R factor transfer in Rhizobium leguminosarum
    • Beringer, J. 1974. R factor transfer in Rhizobium leguminosarum. J. Gen. Microbiol. 84:188-189.
    • (1974) J. Gen. Microbiol. , vol.84 , pp. 188-189
    • Beringer, J.1
  • 4
    • 84982543317 scopus 로고
    • Specificity in the Gunnera-Nostoc endosymbiosis
    • Bonnett, H. T., and W. B. Silvester. 1981. Specificity in the Gunnera-Nostoc endosymbiosis. New Phytol. 89:121-128.
    • (1981) New Phytol. , vol.89 , pp. 121-128
    • Bonnett, H.T.1    Silvester, W.B.2
  • 5
    • 0000821023 scopus 로고
    • Genetic diversity and phylogeny analysis of Anabaena azollae based on RFLPs detected in Azolla-Anabaena azolla DNA complexes using nif gene probes
    • Coppenolle, B. V., S. R. McCourch, I. Watanabe, N. Huang, and C. van Hove. 1995. Genetic diversity and phylogeny analysis of Anabaena azollae based on RFLPs detected in Azolla-Anabaena azolla DNA complexes using nif gene probes. Theor. Appl. Genet. 91:589-597.
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 589-597
    • Coppenolle, B.V.1    McCourch, S.R.2    Watanabe, I.3    Huang, N.4    Van Hove, C.5
  • 6
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58:2180-2187.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 7
    • 0000210211 scopus 로고
    • Pure culture and reconstitution of the Anthoceros-Nostoc symbiotic associations
    • Enderlin, C. S., and J. C. Meeks. 1983. Pure culture and reconstitution of the Anthoceros-Nostoc symbiotic associations. Planta 158:157-165.
    • (1983) Planta , vol.158 , pp. 157-165
    • Enderlin, C.S.1    Meeks, J.C.2
  • 10
    • 0001111529 scopus 로고
    • Nitrogen fixation in cyanobacteria
    • G. Stacey, R. H. Burris, and H. E. Evans (ed.), Chapman and Hall, New York, N.Y.
    • Haselkorn, R., and W. J. Buikema. 1992. Nitrogen fixation in cyanobacteria, p. 166-190. In G. Stacey, R. H. Burris, and H. E. Evans (ed.), Biological nitrogen fixation. Chapman and Hall, New York, N.Y.
    • (1992) Biological Nitrogen Fixation , pp. 166-190
    • Haselkorn, R.1    Buikema, W.J.2
  • 11
    • 0025761156 scopus 로고
    • ERIC sequences: A novel family of repetitive elements in the genome of Escherichia coli, Salmonella typhimurium and other enterobacteria
    • Hulton, C. S. J., C. F. Higgins, and P. M. Sharp. 1991. ERIC sequences: a novel family of repetitive elements in the genome of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Biol. 5:825-834.
    • (1991) Mol. Biol. , vol.5 , pp. 825-834
    • Hulton, C.S.J.1    Higgins, C.F.2    Sharp, P.M.3
  • 12
    • 0028840397 scopus 로고
    • Characterization of a nitrogen-fixation (nif) gene cluster from Anabaena azolla 1a shows that closely related cyanobacteria have highly variable but structured intergenic regions
    • Jackman, D. A., and M. E. Mulligan. 1995. Characterization of a nitrogen-fixation (nif) gene cluster from Anabaena azolla 1a shows that closely related cyanobacteria have highly variable but structured intergenic regions. Microbiology 141:2235-2244.
    • (1995) Microbiology , vol.141 , pp. 2235-2244
    • Jackman, D.A.1    Mulligan, M.E.2
  • 13
    • 0028118161 scopus 로고
    • Reconstitution of the Gunnera manicata Linden symbiosis: Cyanobacterial specificity
    • Johansson, C., and B. Bergman. 1994. Reconstitution of the Gunnera manicata Linden symbiosis: cyanobacterial specificity. New Phytol. 126:643-652.
    • (1994) New Phytol. , vol.126 , pp. 643-652
    • Johansson, C.1    Bergman, B.2
  • 14
    • 0026059692 scopus 로고
    • Rapid polymerase chain reaction amplification using intact bacterial cells
    • Joshi, A. K., B. Varsha, and G. F. L. Ames. 1991. Rapid polymerase chain reaction amplification using intact bacterial cells. BioTechniques 10:42-44.
    • (1991) BioTechniques , vol.10 , pp. 42-44
    • Joshi, A.K.1    Varsha, B.2    Ames, G.F.L.3
  • 15
    • 0027318818 scopus 로고
    • Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains
    • Judd, A. K., M. Schneider, M. J. Sadowsky, and F. J. de Bruijn. 1993. Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains. Appl. Environ. Microbiol. 59:1702-1708.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1702-1708
    • Judd, A.K.1    Schneider, M.2    Sadowsky, M.J.3    De Bruijn, F.J.4
  • 16
    • 0025245767 scopus 로고
    • Organization of the bacterial chromosome
    • Krawiec, S., and M. Riley. 1990. Organization of the bacterial chromosome. Microbiol. Rev. 54:502-539.
    • (1990) Microbiol. Rev. , vol.54 , pp. 502-539
    • Krawiec, S.1    Riley, M.2
  • 17
    • 0029891660 scopus 로고    scopus 로고
    • Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: Application to Rhizobium leguminosarum and its different biovars
    • Laguerre, G., P. Mavingui, M.-R. Allard, M.-P. Charnay, P. Louvrier, S.-I. Mazurier, L. Rigottier-Gois, and N. Amarger. 1996. Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Appl. Environ. Microbiol. 62:2029-2036.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2029-2036
    • Laguerre, G.1    Mavingui, P.2    Allard, M.-R.3    Charnay, M.-P.4    Louvrier, P.5    Mazurier, S.-I.6    Rigottier-Gois, L.7    Amarger, N.8
  • 18
    • 0028242251 scopus 로고
    • Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR
    • Louws, F. J., D. W. Fulbright, C. H. Stephens, and F. de Bruijn. 1994. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60:2286-2295.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2286-2295
    • Louws, F.J.1    Fulbright, D.W.2    Stephens, C.H.3    De Bruijn, F.4
  • 19
    • 0026710382 scopus 로고
    • Short, interspersed repetitive DNA sequences in prokaryotic genomes
    • Lupski, J. R., and G. M. Weinstock. 1992. Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174:4525-4529.
    • (1992) J. Bacteriol. , vol.174 , pp. 4525-4529
    • Lupski, J.R.1    Weinstock, G.M.2
  • 20
    • 0024354578 scopus 로고
    • Comparison of DNA restriction fragment length polymorphisms of Nostoc strains in and from cycads
    • Lindblad, P., R. Haselkorn, B. Bergman, and S. A. Nierzwicki-Bauer. 1989. Comparison of DNA restriction fragment length polymorphisms of Nostoc strains in and from cycads. Arch. Microbiol. 152:20-24.
    • (1989) Arch. Microbiol. , vol.152 , pp. 20-24
    • Lindblad, P.1    Haselkorn, R.2    Bergman, B.3    Nierzwicki-Bauer, S.A.4
  • 22
    • 0342936503 scopus 로고    scopus 로고
    • Long tandemly repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC 7120
    • Masepohl, B., K. Görlitz, and H. Böhmen. 1996. Long tandemly repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC 7120. Biochim. Biophy. Acta 1307:26-30.
    • (1996) Biochim. Biophy. Acta , vol.1307 , pp. 26-30
    • Masepohl, B.1    Görlitz, K.2    Böhmen, H.3
  • 23
    • 0025319146 scopus 로고
    • Highly repetitive DNA sequences in cyanobacterial genomes
    • Mazel, D., J. Houmard, A. M. Castets, and N. T. de Marsac. 1990. Highly repetitive DNA sequences in cyanobacterial genomes. J. Bacteriol. 172: 2755-2761.
    • (1990) J. Bacteriol. , vol.172 , pp. 2755-2761
    • Mazel, D.1    Houmard, J.2    Castets, A.M.3    De Marsac, N.T.4
  • 24
  • 25
    • 0027965480 scopus 로고    scopus 로고
    • Use of repetitive sequences and the polymerase chain reaction to fingerprint the genomic DNA of Rhizobium galegae strains and to identify the DNA obtained by sonicating the liquid cultures and root nodules
    • Nick, G., and K. Lindström. Use of repetitive sequences and the polymerase chain reaction to fingerprint the genomic DNA of Rhizobium galegae strains and to identify the DNA obtained by sonicating the liquid cultures and root nodules. Syst. Appl. Microbiol. 17:265-273.
    • Syst. Appl. Microbiol. , vol.17 , pp. 265-273
    • Nick, G.1    Lindström, K.2
  • 26
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 27
    • 0025248688 scopus 로고
    • DNA probes show genetic variation in cyanobacterial symbionts of the Azolla fern and a closer relationship to free-living Nostoc strains than to free-living Anabaena strains
    • Plazinski, J., Q. Zheng, R. Taylor, L. Croft, B. G. Rolfe, and B. E. S. Gunning. 1990. DNA probes show genetic variation in cyanobacterial symbionts of the Azolla fern and a closer relationship to free-living Nostoc strains than to free-living Anabaena strains. Appl. Environ. Microbiol. 35:1263-1270.
    • (1990) Appl. Environ. Microbiol. , vol.35 , pp. 1263-1270
    • Plazinski, J.1    Zheng, Q.2    Taylor, R.3    Croft, L.4    Rolfe, B.G.5    Gunning, B.E.S.6
  • 29
    • 0345129386 scopus 로고
    • Unit 3.2
    • F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Wiley Interscience, New York, N.Y.
    • Richards, E. 1992. Unit 3.2. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. Wiley Interscience, New York, N.Y.
    • (1992) Current Protocols in Molecular Biology
    • Richards, E.1
  • 30
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • Rippka, R., J. Deruelles, M. Waterbury, M. Herdman, and R. Y. Stanier. 1976. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. Gen. Microbiol. 111:1-61.
    • (1976) Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, M.3    Herdman, M.4    Stanier, R.Y.5
  • 32
    • 0028818218 scopus 로고
    • Characterization of toxin-producing cyanobacteria by using an oligonucleotide probe containing a tandemly repeated heptamer
    • Rouhiainen, L., K. Sivonen, W. J. Buikema, and R. Haselkorn. 1995. Characterization of toxin-producing cyanobacteria by using an oligonucleotide probe containing a tandemly repeated heptamer. J. Bacteriol. 177:6021-6026.
    • (1995) J. Bacteriol. , vol.177 , pp. 6021-6026
    • Rouhiainen, L.1    Sivonen, K.2    Buikema, W.J.3    Haselkorn, R.4
  • 33
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier, R. Y., R. Kunisawa, M. Mandel, and G. Cohen-Bazire. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35:171-205.
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 34
    • 0021669070 scopus 로고
    • Repetitive extragenic palindromic sequences: A major component of the bacterial genome
    • Stern, M. J., G. Ferro-Luzzi Ames, N. H. Smith, E. C. Robinson, and C. F. Higgins: 1984. Repetitive extragenic palindromic sequences: a major component of the bacterial genome. Cell 37:1015-1026.
    • (1984) Cell , vol.37 , pp. 1015-1026
    • Stern, M.J.1    Ferro-Luzzi Ames, G.2    Smith, N.H.3    Robinson, E.C.4    Higgins, C.F.5
  • 35
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in the eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic, J., T. Koeuth, and J. R. Lupski. 1991. Distribution of repetitive DNA sequences in the eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 36
    • 0027283317 scopus 로고
    • Whole-cell repetitive element sequence-based polymerase chain reaction allows rapid assessment of clonal relationship of bacterial isolates
    • Woods, C. R., J. Versalovic, T. Koeuth, and J. R. Lupski. 1993. Whole-cell repetitive element sequence-based polymerase chain reaction allows rapid assessment of clonal relationship of bacterial isolates. J. Clin. Microbiol. 31:1927-1931.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1927-1931
    • Woods, C.R.1    Versalovic, J.2    Koeuth, T.3    Lupski, J.R.4
  • 37
    • 0025181999 scopus 로고
    • The Gunnera symbiosis: DNA restriction fragment length polymorphism and protein comparison of Nostoc symbionts
    • Zimmerman, W. J., and B. Bergman. 1990. The Gunnera symbiosis: DNA restriction fragment length polymorphism and protein comparison of Nostoc symbionts. Microb. Ecol. 19:291-302.
    • (1990) Microb. Ecol. , vol.19 , pp. 291-302
    • Zimmerman, W.J.1    Bergman, B.2
  • 38
    • 0027096014 scopus 로고
    • Cyanobiont diversity within and among cycads of one field site
    • Zimmerman, W. J., and B. H. Rosen. 1992. Cyanobiont diversity within and among cycads of one field site. Can. J. Microbiol. 38:1324-1328.
    • (1992) Can. J. Microbiol. , vol.38 , pp. 1324-1328
    • Zimmerman, W.J.1    Rosen, B.H.2


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