Endonuclease V (nfi) mutant of Escherichia coli K-12

Journal of Bacteriology

Volumn 180, Issue 1, 1998, Pages 46-51

  Guo, Guangming ^a   Weiss, Bernard ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DEOXYADENOSINE; ENDONUCLEASE; NITROFURANTOIN;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL MUTATION; BASE MISPAIRING; BASE PAIRING; CONFORMATIONAL TRANSITION; ENZYME CONFORMATION; ESCHERICHIA COLI; GENE INSERTION; NONHUMAN; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); BACTERIOPHAGE LAMBDA; ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA COLI K12; NEGIBACTERIA; PROKARYOTA;

EID: 0031963104     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.1.46-51.1998     Document Type: Article

References (40)

1. Anderson, R. P., and J. R. Roth. 1977. Tandem genetic duplications in phage and bacteria. Annu. Rev. Microbiol. 31:473-505.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). 1989. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
3. Bachmann, B. J. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 2460-2488. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
4. Cesarone, C. F., C. Bolognesi, and L. Santi. 1979. Improved microfluorometric DNA determination in biological material using 33258 Hoechst. Anal. Biochem. 100:188-197.
5. Chung, C. T., S. L. Niemela, and R. H. Miller. 1989. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. USA 86:2172-2175.
6. Cunningham, R. P., S. M. Saporito, S. G. Spitzer, and B. Weiss. 1986. Endonuclease IV (nfo) mutant of Escherichia coli. J. Bacteriol. 168:1120-1127.
7. Cunningham, R. P., and B. Weiss. 1985. Endonuclease III (nth) mutants of Escherichia coli. Proc. Natl. Acad. Sci. USA 82:474-478.
8. Demple, B., J. Halbrook, and S. Linn. 1983. Escherichia coli xth mutants are hypersensitive to hydrogen peroxide. J. Bacteriol. 153:1079-1082.
9. Demple, B., and S. Linn. 1982. On the recognition and cleavage mechanism of Escherichia coli endodeoxyribonuclease V, a possible DNA repair enzyme. J. Biol. Chem. 257:2848-2855.
10. Duncan, B. K. 1985. Isolation of insertion, deletion, and nonsense mutations of the uracil-DNA glycosylase (ung) gene of Escherichia coli K-12. J. Bacteriol. 164:689-695.
11. El-Hajj, H. H., H. Zhang, and B. Weiss. 1988. Lethality of a dut (deoxyuridine triphosphatase) mutation in Escherichia coli. J. Bacteriol. 170:1069-1075.
12. Gates, F. T., and S. Linn. 1977. Endonuclease V of Escherichia coli. J. Biol. Chem. 252:1647-1653.
13. Guo, G., Y. Ding, and B. Weiss. 1997. nfi, the gene for endonuclease V in Escherichia coli K-12. J. Bacteriol. 179:310-316.
14. Harosh, I., and J. Sperling. 1988. Hypoxanthine-DNA glycosylase from Escherichia coli. Partial purification and properties. J. Biol. Chem. 263:3328-3334.
15. Hartman, Z., E. N. Henrikson, P. E. Hartman, and T. A. Cebula. 1994. Molecular models that may account for nitrous acid mutagenesis in organisms containing double-stranded DNA. Environ. Mol. Mutagen. 24:168-175.
16. Hoess, R. H., and R. K. Herman. 1975. Isolation and characterization of mutator strains of Escherichia coli K-12. J. Bacteriol. 122:474-484.
17. Jenkins, S. T., and P. M. Bennett. 1976. Effect of mutations in deoxyribonucleic acid repair pathways on the sensitivity of Escherichia coli K-12 strains to nitrofurantoin. J. Bacteriol. 125:1214-1216.
18. Karran, P., and T. Lindahl. 1978. Enzymatic excision of free hypoxanthine from polydeoxynucleotides and DNA containing deoxyinosine monophosphate residues. J. Biol. Chem. 253:5877-5879.
19. LaRossa, R. A. 1996. Mutant selections linking physiology, inhibitors, and genotypes, p. 2527-2587. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
20. Miller, J. H. 1992. A short course in bacterial genetics. A laboratory manual and handbook for Escherichia coli and related bacteria. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
21. Modrich, P., and R. Lahue. 1996. Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu. Rev. Biochem. 65:101-133.
22. Nakahigashi, K., K. Nishimura, K. Miyamoto, and H. Inokuchi. 1991. Photosensitivity of a protoporphyrin-accumulating, light sensitive mutant (visA) of Escherichia coli K-12. Proc. Natl. Acad. Sci. USA 88:10520-10524.
23. Nishimura, K., T. Nakayashiki, and H. Inokuchi. 1993. Cloning and sequencing of the hemE gene encoding uroporphyrinogen III decarboxylase (UPD) from Escherichia coli K-12. Gene 133:109-113.
24. Povirk, L. F. 1996. DNA damage and mutagenesis by radiomimetic DNA-cleaving agents: bleomycin, neocarzinostatin and other enediynes. Mutat. Res. 355:71-89.
25. Rupp, W. D. 1996. DNA repair mechanisms, p. 2277-2294. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
26. Russell, C. B., D. S. Thaler, and F. W. Dahlquist. 1989. Chromosomal transformation of Escherichia coli recD strains with linearized plasmids. J. Bacteriol. 171:2609-2613.
27. Saparbaev, M., and J. Laval. 1994. Excision of hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases. Proc. Natl. Acad. Sci. USA 91:5873-5877.
28. Sinsheimer, R. L. 1959. Purification and properties of bacteriophage φX174. J. Mol. Biol. 1:37-42.
29. Sternberg, N. L., and R. Maurer. 1991. Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium. Methods Enzymol. 204:18-23.
30. Taylor, A. F., and B. Weiss. 1982. Role of exonuclease III in the base-excision repair of uracil-containing DNA. J. Bacteriol. 151:351-357.
31. Timms, A. R., H. Steingrimsdottir, A. R. Lehmann, and B. A. Bridges. 1992. Mutant sequences in the rpsL gene of Escherichia coli B/r: mechanistic implications for spontaneous and ultraviolet light mutagenesis. Mol. Gen. Genet. 232:89-96.
32. Vogel, H. J., and D. M. Bonner. 1956. Acetylornithase of Escherichia coli: partial purification and some properties. J. Biol. Chem. 218:97-106.
33. White, B. J., S. J. Hochhauser, N. M. Cintrón, and B. Weiss. 1976. Genetic mapping of xthA, the structural gene for exonuclease III in Escherichia coli K-12. J. Bacteriol. 126:1082-1088.
34. Yang, H., H. Inokuchi, and J. Adler. 1995. Phototaxis away from blue light by an Escherichia coli mutant accumulating protoporhyrin IX. Proc. Natl. Acad. Sci. USA 92:7332-7336.
35. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
36. Yao, M., Z. Hatahet, R. J. Melaniede, and Y. W. Kow. 1994. Deoxyinosine 3′ endonuclease, a novel deoxyinosine-specific endonuclease from Escherichia coli. Ann. N. Y. Acad. Sci. 726:315-316.
37. Yao, M., Z. Hatahet, R. J. Melamede, and Y. W. Kow. 1994. Purification and characterization of a novel deoxyinosine-specific enzyme, deoxyinosine 3′ endonuclease, from Escherichia coli. J. Biol. Chem. 269:16260-16268.
38. Yao, M., and Y. W. Kow. 1994. Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3′-endonuclease from Escherichia coli. J. Biol. Chem. 269:31390-31396.
39. Yao, M., and Y. W. Kow. 1996. Cleavage of insertion/deletion mismatches, flap and pseudo-Y DNA structures by deoxyinosine 3′-endonuclease from Escherichia coli. J. Biol. Chem. 271:30672-30676.
40. Youngman, R. J., W. F. Osswald, and E. F. Elstner. 1982. Mechanisms of oxygen activation by nitrofurantoin and relevance to its toxicity. Biochem. Pharmacol. 31:3723-3729.