Nucleotide sequence and genetic characterization of the novel IncQ-like plasmid pIE1107

Plasmid

Volumn 39, Issue 3, 1998, Pages 165-181

  Tietze, Erhard ^a  

^a ROBERT KOCH INSTITUTE   (Germany)

Author keywords

Incompatibility group IncQ; Iterons; Kanamycin resistance; Nucleotide sequence; Plasmid replication; Streptothricin resistance

Indexed keywords

KANAMYCIN; NUCLEOTIDE; STREPTOTHRICIN;

ARTICLE; DNA REPLICATION; DNA REPLICATION ORIGIN; ESCHERICHIA COLI; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PROTEIN DNA INTERACTION; PSEUDOMONAS PUTIDA; REPLICON;

ESCHERICHIA COLI; NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 0031956341     PISSN: 0147619X     EISSN: None     Source Type: Journal    
DOI: 10.1006/plas.1998.1343     Document Type: Article

References (41)

1. Albritton W. L., Brunton J. L., Slaney L., MacLean I. Plasmid-mediated sulfonamide resistance inHaemophilus ducreyi. Antimicrob. Agents Chemother. 21:1982;159-165.
2. Araki Y., Inoue M., Hashimoto H. Characterization and mobilization of nonconjugative plasmids encoding resistance to streptomycin and sulfanilamide. Microbiol. Immunol. 31:1987;1107-1111.
3. Ausubel F., Brent R., Kingston R., Moore D., Seidman J., Smith J., Struhl K. Current Protocols in Molecular Biology. 1994;Greene/Wiley, New York.
4. Bagdasarian M., Lurz R., Rückert B., Franklin F. C. H., Bagdasarian M. M., Frey J., Timmis K. N. Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning inPseudomonas. Gene. 16:1981;237-247.
5. Barth P. T., Grinter N. J. Comparison of the deoxyribonucleic acid molecular weights and homologies of plasmids conferring linked resistance to streptomycin and sulfonamide. J. Bacteriol. 120:1974;618-630.
6. Benson D. A., Boguski M. S., Lipman D. J., Ostell J. GenBank. Nucleic Acids Res. 25:1997;1-6.
7. Dorrington R. A., Rawlings D. E. Identification and sequence of the basic replication region of a broad-host-range plasmid isolated fromThiobacillus ferrooxidans. J. Bacteriol. 171:1989;2735-2739.
8. Dorrington R. A., Rawlings D. E. Characterization of the minimum replicon of the broad-host-range plasmid pTF-FC2 and similarity between pTF-FC2 and the IncQ plasmids. J. Bacteriol. 172:1990;5697-5705.
9. Fling M. E., Kopf M., Richards C. Characterization of plasmid pAZ1 and the type III dihydrofolate reductase gene. Plasmid. 19:1988;30-38.
10. Frey J., Bagdasarian M. The molecular biology of IncQ plasmids. Promiscuous Plasmids of Gram-Negative Bacteria. 1989;Academic Press, London. p. 79-94.
11. Frey J., Bagdasarian M. M., Bagdasarian M. Replication and copy number control of the broad-host-range plasmid RSF1010. Gene. 113:1992;101-106.
12. Fürste J. P., Pansegrau W., Frank R., Blocker H., Scholz P., Bagdasarian M., Lanka E. Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector. Gene. 48:1986;119-131.
13. Gormley E. P., Davies J. Transfer of plasmid RSF1010 by conjugation fromEscherichia coliStreptomyces lividansMycobacterium smegmatis. J. Bacteriol. 173:1991;6705-6708.
14. Grinter N. J., Barth P. T. Characterization of SmSu plasmids by restriction endonuclease cleavage and compatibility testing. J. Bacteriol. 128:1976;349-400.
15. Guerry P., van Embden J., Falkow S. Molecular nature of two non-conjugative plasmids carrying drug resistance genes. J. Bacteriol. 117:1974;619-630.
16. Haring V., Scherzinger E. Replication proteins of the IncQ plasmid RSF1010. Thomas C. M. Promiscuous Plasmids of Gram-Negative Bacteria. 1989;95-124 Academic Press, London.
17. Haring V., Scholz P., Scherzinger E., Frey J., Derbyshire K., Hatfull G., Willets N., Bagdasarian M. Protein RepC is involved in copy control of the broad-host-range plasmid RSF1010. Proc. Natl. Acad. Sci. USA. 82:1985;6090-6094.
18. Kim K., Meyer R. J. Copy-number of broad host-range plasmid R1162 is regulated by a small RNA. Nucleic Acids Res. 14:1986;8024-8046.
19. Kim Y. J., Meyer R. J. An essential iteron-binding protein required for plasmid R1162 replication induces localized melting within the origin at a specific site in AT-rich DNA. J. Bacteriol. 173:1991;5539-5545.
20. Lin L. S., Meyer R. J. Directly repeated 20 bp sequence of plasmid R1162 DNA is required for replication, expression of incompatibility and copy-number control. Plasmid. 15:1986;35-47.
21. Lin L. S., Meyer R. J. DNA synthesis is initiated at two positions within the origin of replication of plasmid R1162. Nucleic Acids Res. 15:1987;8319-8331.
22. Maeser S., Scholz P., Otto S., Scherzinger E. Gene F of plasmid RSF1010 codes for a low-molecular-weight repressor protein that autoregulates expression of the repAC operon. Nucleic Acids Res. 18:1990;6215-6222.
23. Meyer R., Hinds M., Brasch M. Properties of R1162, a broad-host-range, high-copy-number plasmid. J. Bacteriol. 150:1982;552-562.
24. Miao D. M., Honda Y., Tanaka K., Higashi A., Nakamura T., Taguchi Y., Sakai H., Komano T., Bagdasarian M. A base-paired hairpin structure essential for the functional priming signal for DNA replication of the broad host range plasmid RSF1010. Nucleic Acids Res. 21:1993;4900-4903.
25. Miao D. M., Sakai H., Okamoto S., Tanaka K., Okuda M., Honda Y., Komano T., Bagdasarian M. The interaction of RepC initiator with iterons in the replication of the broad host-range plasmid RSF1010. Nucleic Acids Res. 23:1995;3295-3300.
26. Novick R. P. Plasmid incompatibility. Microbiol. Rev. 51:1987;381-395.
27. Persson C., Nordström K. Control of the replication of the broad-host-range plasmid RSF1010: The incompatibility determinant consists of directly repeated DNA sequences. Mol. Gen. Genet. 203:1986;198-192.
28. Radström P., Swedberg G., Sköld O. Genetic analyses of sulfonamide resistance and its dissemination in gram-negative bacteria illustrate new aspects of R plasmid evolution. Antimicrob. Agents Chemother. 35:1991;1840-1848.
29. Rawlings D. E., Pretorius I. M., Woods D. R. Expression of aThiobacillus ferrooxidansEscherichia coli. J. Bacteriol. 158:1984;737-738.
30. Rotger R., Rubio F., Nombela C. A multiresistance plasmid isolated from commensalNeisseria. J. Gen. Microbiol. 132:1986;2491-2496.
31. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
32. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
33. Scholz P., Haring V., Wittmann-Lieboldt B., Ashman K., Bagdasarian M., Scherzinger E. Complete nucleotide sequence and gene organization of the broad-host-range plasmid RSF1010. Gene. 75:1989;271-288.
34. Shaw K. J., Rather P. N., Hare R. S., Miller G. H. Molecular genetics of aminoglycoside resistance genes and familial relationships of the aminoglycoside-modifying enzymes. Microbiol. Rev. 57:1993;138-163.
35. Simons R. W., Hoopes B. C., McClure W. R., Kleckner N. Three promoters near the termini of IS10: pIN, pOUT, and pIII. Cell. 34:1983;673-682.
36. Smith A. S. G., Rawlings D. E. The poison-antidote stability system of the broad-host-rangeThiobacillus ferrooxidans. Mol. Microbiol. 26:1997;961-970.
37. Stoesser G., Sterk P., Tuli M. A., Stoehr P. J., Cameron G. N. The EMBL nucleotide sequence database. Nucleic Acids Research. 25:1997;7-13.
38. Sykora P. Macroevolution of plasmids: A model for plasmid speciation. J. Theor. Biol. 159:1992;53-65.
39. Tietze E., Brevet J. Nucleotide sequence of the bacterial streptothricin resistance genesat. Biochim. Biophys. Acta. 1263:1995;176-178.
40. Tietze E., Tschäpe H., Voigt W. Characterization of new R plasmids belonging to incompatibility group IncQ. J. Basic Microbiol. 29:1989;695-706.
41. Willson P. J., Deneer H. G., Potter A., Albritton W. Characterization of a streptomycin sulfonamide resistance plasmid fromActinobacillus pleuropneumoniae. Antimicrob. Agents Chemother. 33:1989;235-238.