Specific sequence changes in the 5'-terminal region of the genome of satellite tobacco mosaic virus are required for adaptation to tobacco mosaic virus

Journal of General Virology

Volumn 79, Issue 4, 1998, Pages 905-913

  Ngon A Yassi, Martin ^a   Dodds, J Allan ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; DEFECTIVE VIRUS; DELETION MUTANT; NONHUMAN; PRIORITY JOURNAL; PROTOPLAST; TOBACCO MOSAIC VIRUS; VIRUS REPLICATION;

EID: 0031954508     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-79-4-905     Document Type: Article

References (22)

1. Abrahams, J. P., van den Berg, M., van Batenburg, E. & Pleij, C. (1990). Prediction of RNA secondary structure, including pseudo-knotting, by computer simulation. Nucleic Acids Research 18, 3035-3044.
2. Dawson, W. O., Beck, O. L., Knorr, D. A. & Grantham, G. L. (1986). cDNA cloning of the complete genome of tobacco mosaic virus and production of infectious transcripts. Proceedings of the National Academy of Sciences, USA 83, 1832-1836.
3. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
4. Dodds, J. A. (1991). Structure and function of the genome of satellite tobacco mosaic virus. Canadian Journal of Plant Pathology 13, 192-195.
5. Ishikawa, M., Meshi, T., Watanabe, Y. & Okada, Y. (1988). Replication of chimeric tobacco mosaic viruses which carry heterologous combinations of replicase genes and 3′ noncoding regions. Virology 164, 290-293.
6. Ishikawa, M., Kroner, P., Ahlquist, P. & Meshi, T. (1991). Biological activities of hybrid RNAs generated by 3′-end exchanges between tobacco mosaic virus and brome mosaic virus. Journal of Virology 65, 3451-3459.
7. Kurath, G. & Dodds, J. A. (1995). Mutation analyses of molecularly cloned satellite tobacco mosaic virus during serial passage in plants: evidence for hot spots of genetic changes. RNA 1, 491-500.
8. Kurath, G., Rey, M. E. C. & Dodds, J. A. (1992). Analysis of genetic heterogeneity within the type strain of satellite tobacco mosaic virus reveals several variants and a strong bias for A to G substitution mutations. Virology 189, 233-244.
9. Kurath, G., Heick, J. A. & Dodds, J. A. (1993a). RNase protection analyses show high genetic diversity among field isolates of satellite tobacco mosaic virus. Virology 194, 414-418.
10. Kurath, G., Rey, M. E. C. & Dodds, J. A. (1993b). Tobamovirus helper specificity of satellite tobacco mosaic virus involves a domain near the 5′ end of the satellite genome. Journal of General Virology 74, 1233-1243.
11. Mirkov, T. E., Mathews, D. M., Du Plessis, D. H. & Dodds, J. A. (1989). Nucleotide sequence and translation of satellite tobacco mosaic virus RNA. Virology 170, 139-146.
12. Mirkov, T. E., Kurath, G., Mathews, D. M., Elliot, K., Dodds, J. A. & Fitzmaurice, L. (1990). Factors affecting efficient infection of tobacco with in vitro transcripts from cloned cDNA of satellite tobacco mosaic virus. Virology 179, 395-402.
13. Pogue, G. P. & Hall, T. C. (1992). The requirements of a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive strand RNA initiation. Journal of Virology 66, 674-684.
14. Rao, A. L. N., Duggal, R., Lasher, F. & Hall, T. C. (1994). Analysis of RNA replication in plant viruses. Molecular virology techniques. Methods in Molecular Genetics 4, 216-236.
15. Roossinck, M. J., Sleat, D. & Palukaitis, P. (1992). Satellite RNAs of plant viruses - structural and biological effect. Microbiological Reviews 56, 265-279.
16. Routh, G., Ngon A Yassi, M., Rao, A. L. N., Mirkov, T. E. & Dodds, J. A. (1997). Replication of wild-type and mutant clones of satellite tobacco mosaic virus in Nicotiana benthamiana protoplasts. Journal of General Virology 78, 1271-1275.
17. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5467.
18. Turpen, T. H., Reinl, S. J., Charoenvit, Y., Hoffman, S. I., Fallarme, V. & Grill, L. K. (1994). Malarial epitopes expressed on the surface of recombinant tobacco mosaic virus. Bio/Technology 13, 53-57.
19. Valverde, R. A. & Dodds, J. A. (1987). Some properties of isometric virus particles which contain the satellite RNA of tobacco mosaic virus. Journal of General Virology 68, 965-972.
20. Valverde, R. A., Heick, J. A. & Dodds, J. A. (1991). Interactions between satellite tobacco mosaic virus, helper tobamoviruses, and their hosts. Phytopathology 81, 99-104.
21. Weng, Z. & Xiong, Z. (1995). A method for accurate determination of terminal sequences of viral genomic RNA. Genome Research 5, 202-207.
22. Zuker, M. & Stiegler, P. (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research 9, 133-148.