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Volumn 46, Issue 5, 1998, Pages 534-541

Patterns of base composition within the genes of Drosophila melanogaster

Author keywords

G+C content; Isochores; Synonymous codon use

Indexed keywords

ARTICLE; CODON; DNA BASE COMPOSITION; DROSOPHILA MELANOGASTER; GENETIC ANALYSIS; GENETIC SELECTION; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; UNINDEXED SEQUENCE;

EID: 0031954284     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006334     Document Type: Article
Times cited : (25)

References (36)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi H (1994) Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136:927-935
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • Akashi H (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139:1067-1076
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 3
    • 0024805395 scopus 로고
    • The isochore organization of the human genome
    • Bernardi G (1989) The isochore organization of the human genome. Annu Rev Genet 23:637-661
    • (1989) Annu Rev Genet , vol.23 , pp. 637-661
    • Bernardi, G.1
  • 5
    • 0023472826 scopus 로고
    • CpG islands as gene markers in the vertebrate nucleus
    • Bird AP (1987) CpG islands as gene markers in the vertebrate nucleus. Trends Genet 3:342-347
    • (1987) Trends Genet , vol.3 , pp. 342-347
    • Bird, A.P.1
  • 6
    • 0023584574 scopus 로고
    • Heterogeneous DNA damage and repair in the mammalian genome
    • Bohr VA, Philips DH, Hanawalt PC (1987) Heterogeneous DNA damage and repair in the mammalian genome. Cancer Res 47:6426-6436
    • (1987) Cancer Res , vol.47 , pp. 6426-6436
    • Bohr, V.A.1    Philips, D.H.2    Hanawalt, P.C.3
  • 7
    • 0026739088 scopus 로고
    • The evolutionary consequences of nonrandom damage and repair of chromatin domains
    • Boulikas T (1992) The evolutionary consequences of nonrandom damage and repair of chromatin domains. J Mol Evol 35:156-180
    • (1992) J Mol Evol , vol.35 , pp. 156-180
    • Boulikas, T.1
  • 8
    • 0027311934 scopus 로고
    • Compositional heterogeneity and patterns of molecular evolution in the Drosophila genome
    • Carulli JP, Krane DE, Hartl DL, Ochman H (1993) Compositional heterogeneity and patterns of molecular evolution in the Drosophila genome. Genetics 134:837-845
    • (1993) Genetics , vol.134 , pp. 837-845
    • Carulli, J.P.1    Krane, D.E.2    Hartl, D.L.3    Ochman, H.4
  • 9
    • 0029051398 scopus 로고
    • Correlation of GC content with replication timing and repair mechanisms in weakly expressed E. coli genes
    • Deschavanne P, Filipski J (1995) Correlation of GC content with replication timing and repair mechanisms in weakly expressed E. coli genes. Nucleic Acids Res 23:1350-1353
    • (1995) Nucleic Acids Res , vol.23 , pp. 1350-1353
    • Deschavanne, P.1    Filipski, J.2
  • 10
    • 0028301199 scopus 로고
    • Complete DNA sequence of yeast chromosome XI
    • Dujon B, et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369:371-378
    • (1994) Nature , vol.369 , pp. 371-378
    • Dujon, B.1
  • 11
    • 0027183991 scopus 로고
    • Recombination and mammalian genome evolution
    • Eyre-Walker A (1993) Recombination and mammalian genome evolution. Proc R Soc Lond B 252:237-243
    • (1993) Proc R Soc Lond B , vol.252 , pp. 237-243
    • Eyre-Walker, A.1
  • 12
    • 0028123674 scopus 로고
    • DNA mismatch repair and synonymous codon evolution in mammals
    • Eyre-Walker A (1994) DNA mismatch repair and synonymous codon evolution in mammals. Mol Biol Evol 11:88-98
    • (1994) Mol Biol Evol , vol.11 , pp. 88-98
    • Eyre-Walker, A.1
  • 13
    • 0029878715 scopus 로고    scopus 로고
    • The close proximity of Escherichia coli genes: Consequences for stop codon and synonymous codon use
    • Eyre-Walker A (1996) The close proximity of Escherichia coli genes: consequences for stop codon and synonymous codon use. J Mol Evol 42:73-78
    • (1996) J Mol Evol , vol.42 , pp. 73-78
    • Eyre-Walker, A.1
  • 14
    • 0027432923 scopus 로고
    • Reduced synonymous substitution rate at the start of enterobacterial genes
    • Eyre-Walker A, Bulmer M (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res 21:4599-4603
    • (1993) Nucleic Acids Res , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 15
    • 0028586779 scopus 로고
    • Complete DNA sequence of yeast chromosome II
    • Feldmann H, et al. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13:5795-5809
    • (1994) EMBO J , vol.13 , pp. 5795-5809
    • Feldmann, H.1
  • 16
    • 0023192595 scopus 로고
    • Correlation between molecular clock ticking, codon usage, fidelity of DNA repair, chromosome banding and chromtin compactness in germline cells
    • Filipski J (1987) Correlation between molecular clock ticking, codon usage, fidelity of DNA repair, chromosome banding and chromtin compactness in germline cells. FEBS Lett 217:184-186
    • (1987) FEBS Lett , vol.217 , pp. 184-186
    • Filipski, J.1
  • 17
    • 0024290622 scopus 로고
    • Why the rate of silent substitution is variable within a vertebrate's genome
    • Filipski J (1988) Why the rate of silent substitution is variable within a vertebrate's genome. J Theor Biol 134:159-164
    • (1988) J Theor Biol , vol.134 , pp. 159-164
    • Filipski, J.1
  • 18
    • 0025369193 scopus 로고
    • A compositional map of human chromosome 21
    • Gardiner K, Aissani B, Bernardi G (1990) A compositional map of human chromosome 21. EMBO J 9:1853-1858
    • (1990) EMBO J , vol.9 , pp. 1853-1858
    • Gardiner, K.1    Aissani, B.2    Bernardi, G.3
  • 19
    • 33646286644 scopus 로고
    • Chromosome bands, their chromatin flavors, and their functional features
    • Holmquist GP (1992) Chromosome bands, their chromatin flavors, and their functional features. Am J Hum Genet 40:151-173
    • (1992) Am J Hum Genet , vol.40 , pp. 151-173
    • Holmquist, G.P.1
  • 20
    • 0029026878 scopus 로고
    • Maintenance of pre-mRNA secondary structure by epistatic selection
    • Kirby DA, Muse SV, Stephan W (1995) Maintenance of pre-mRNA secondary structure by epistatic selection. Proc Natl Acad Sci USA 92:9047-9051
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9047-9051
    • Kirby, D.A.1    Muse, S.V.2    Stephan, W.3
  • 21
    • 0027383354 scopus 로고
    • Reduced natural selection associated with low recombination in Drosophila melanogaster
    • Kliman RM, Hey J (1993) Reduced natural selection associated with low recombination in Drosophila melanogaster. Mol Biol Evol 10:1239-1258
    • (1993) Mol Biol Evol , vol.10 , pp. 1239-1258
    • Kliman, R.M.1    Hey, J.2
  • 22
    • 0028040734 scopus 로고
    • The effects of mutation and natural selection on codon bias in the genes of Drosophila
    • Kliman RM, Hey J (1994) The effects of mutation and natural selection on codon bias in the genes of Drosophila. Genetics 137:1049-1056
    • (1994) Genetics , vol.137 , pp. 1049-1056
    • Kliman, R.M.1    Hey, J.2
  • 23
    • 0028799521 scopus 로고
    • Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila
    • Leicht GG, Muse SV, Hanczyc M, Clark AG (1995) Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics 139:299-308
    • (1995) Genetics , vol.139 , pp. 299-308
    • Leicht, G.G.1    Muse, S.V.2    Hanczyc, M.3    Clark, A.G.4
  • 24
    • 0025806910 scopus 로고
    • DNA methylation and chromatin structure
    • Lewis J, Bird A (1991) DNA methylation and chromatin structure. FEBS Lett 285:155-159
    • (1991) FEBS Lett , vol.285 , pp. 155-159
    • Lewis, J.1    Bird, A.2
  • 25
    • 0026572003 scopus 로고
    • Complete DNA sequence of yeast chromosome III
    • Oliver SG, et al. (1992) Complete DNA sequence of yeast chromosome III. Nature 357:38-46
    • (1992) Nature , vol.357 , pp. 38-46
    • Oliver, S.G.1
  • 27
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 28
    • 0027484771 scopus 로고
    • Molecular population genetics of an electrophoretically monomorphic protein in the alcohol dehydrogenase region of Drosophila pseudoobscura
    • Schaeffer SW, Miller EL (1993) Molecular population genetics of an electrophoretically monomorphic protein in the alcohol dehydrogenase region of Drosophila pseudoobscura. Genetics 135:541-552
    • (1993) Genetics , vol.135 , pp. 541-552
    • Schaeffer, S.W.1    Miller, E.L.2
  • 29
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon bias, and its potential application
    • Sharp PM, Li WH (1987) The codon adaptation index - a measure of directional synonymous codon bias, and its potential application. Nucleic Acids Res 15:1281-1295
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 30
    • 0027161465 scopus 로고
    • Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure
    • Sharp PM. Lloyd AT (1993) Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure. Nucleic Acids Res 21:179-183
    • (1993) Nucleic Acids Res , vol.21 , pp. 179-183
    • Sharp, P.M.1    Lloyd, A.T.2
  • 31
    • 85054231438 scopus 로고
    • Selective use of termination codons and variations in codon choice
    • Hatfield DL, lee GJ, Pirtle RM (eds) CRC Press, Boca Raton, FL
    • Sharp PM, Burgess CJ, Lloyd AT, Mitchell KJ (1992) Selective use of termination codons and variations in codon choice. In: Hatfield DL, lee GJ, Pirtle RM (eds) Transfer RNA in protein synthesis. CRC Press, Boca Raton, FL, pp 397-425
    • (1992) Transfer RNA in Protein Synthesis , pp. 397-425
    • Sharp, P.M.1    Burgess, C.J.2    Lloyd, A.T.3    Mitchell, K.J.4
  • 32
    • 0024116811 scopus 로고
    • "Silent" sites in Drosophila are not neutral: Evidence of selection among synonymous codons
    • Shields D, Sharp PM, Higgins DO, Wright F (1988) "Silent" sites in Drosophila are not neutral: evidence of selection among synonymous codons. Mol Biol Evol 5:704-716
    • (1988) Mol Biol Evol , vol.5 , pp. 704-716
    • Shields, D.1    Sharp, P.M.2    Higgins, D.O.3    Wright, F.4
  • 34
    • 0019414963 scopus 로고
    • Chromosomal replication in Drosophila virilis. III. Organization of active origins in the highly polytene salivary gland cells
    • Steinemann M (1981) Chromosomal replication in Drosophila virilis. III. Organization of active origins in the highly polytene salivary gland cells. Chromosoma 82:289-307
    • (1981) Chromosoma , vol.82 , pp. 289-307
    • Steinemann, M.1
  • 35
    • 0027164566 scopus 로고
    • RNA folding in Drosophila shows a distance effect for compensatory fitness interactions
    • Stephan W, Kirby DA (1993) RNA folding in Drosophila shows a distance effect for compensatory fitness interactions. Genetics 135:97-103
    • (1993) Genetics , vol.135 , pp. 97-103
    • Stephan, W.1    Kirby, D.A.2
  • 36
    • 0024497416 scopus 로고
    • Mutation rates differ among regions of the mammalian genome
    • Wolfe K, Sharp PM, Li WH (1989) Mutation rates differ among regions of the mammalian genome. Nature 337:283-285
    • (1989) Nature , vol.337 , pp. 283-285
    • Wolfe, K.1    Sharp, P.M.2    Li, W.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.