DNA attachment to optically trapped beads in microstructures monitored by bead displacement

Bioimaging

Volumn 6, Issue 1, 1998, Pages 25-32

  Dapprich, J ^a,b   Nicklaus, N ^a  

^a SEQ Ltd   (United States)

^b SARNOFF CORPORATION   (United States)

Author keywords

Microfluidics; Optical trap; Single molecule DNA sequencing

Indexed keywords

EXONUCLEASE; FLUORESCENT DYE; NUCLEOTIDE; SINGLE STRANDED DNA; STREPTAVIDIN;

ARTICLE; BIOTINYLATION; DIODE LASER; DNA BINDING; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME SUBSTRATE COMPLEX; MOLECULE; OPTICAL INSTRUMENTATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SILASTIC TUBE;

EID: 0031947177     PISSN: 09669051     EISSN: None     Source Type: Journal    
DOI: 10.1002/1361-6374(199803)6:1<25::AID-BIO4>3.0.CO;2-H     Document Type: Article

References (26)

1. Dörre K et al 1997 Techniques for single molecule sequencing Bioimaging 5 139-52
2. Dyson F 1992 From Eros to Gaia (New York: Pantheon) p 155
3. Jett J H et al 1989 High-speed DNA sequencing: an approach based upon fluorescence detection of single molecules J. Biomol. Struct. Dynam. 7 301-9
4. Jett J H et al DNA and RNA rapid base sequencing-by forming fragments with bases having identifiable characteristics and sequentially cleaving and detecting bases US Patent 4962037
5. Jett J H et al Method for rapid base sequencing in DNA and RNA with two base labeling US Patent 5405747
6. Eigen M and Rigler R 1994 Sorting single molecules: Application to diagnostics and evolutionary biotechnology Proc. Natl Acad. Sci. 91 5740-7
7. Ulmer K M Methods and apparatus for DNA sequencing US Patent 5674743
8. Holm J, Elderstig H, Kristensen O and Rigler R 1997 A fluorescence detection and selection device for DNA-molecules bound to microspheres Nucleosides Nucleotides 16 557-62
9. Perkins T T, Smith D E, Larson R G and Chu S 1995 Stretching of a single tethered polymer in uniform flow Science 268 83-7
10. Burns M A 1996 Microfabricated structures for integrated DNA analysis Proc. Natl Acad. Sci. 93 5556-61
11. Delamarche E, Bernard A, Schmid H, Michel B and Biebuyck H 1997 Patterned delivery of immunoglobulins to surfaces using microfluidic networks Science 276 779-81
12. McCormick R M, Nelson R J, Alonso-Domingo M G, Benvegnu D J and Hooper H H 1997 MicroChannel electrophoretic separations of DNA in injection-molded plastic substrates Anal. Chem. 69 2626-30
13. Gravesen P, Braneberg J and Søndergård Jensen O 1993 Microfluidics - a review J. Micromech. Microeng. 3 168-82
14. Brody J P, Yager P, Goldstein R E and Austin R 1996 Biotechnology at low reynolds numbers Biophys J. 71 3430-41
15. Kaplan W, Elderstig H and Vieider C 1994 A novel fabrication method of capillary tubes on quartz for chemical analysis applications Micro Electro Mechanical Systems (MEMS) Workshop (An Investigation of Micro Structure, Sensors, Actuators, Machines and Robotic Systems) (Oiso, 1994), IEEE Proc. pp 63-8
16. Wilbur J L, Kim E, Younan X and Whitesides G M 1995 Lithographic molding: A convenient route to structures with sub-micrometer dimensions Adv. Mater. 7 649-52
17. Simmons R M, Finer J T, Chu S and Spudich J A 1996 Quantitative measurements of force and displacement using an optical trap Biophys J. 70 1813-22
18. Visscher K, Gross S P and Block S M Construction of multiple beam optical traps with nanometer-resolution position sensing IEEE J. Select. Topics Quantum Electron. 2 1066-76
19. Svoboda K, Schmidt C F, Schnapp B J and Block S M 1993 Direct observation of kinesin stepping by optical trapping interferometry Nature 365 721-7
20. Finer J, Simmons R M and Spudich J A 1994 Single myosin molecule mechanics: piconewton forces and nanometre steps Nature 368 113-19
21. Yin H, Wang M D, Svoboda K, Landick R, Block S M and Gelles J 1995 Transcription against an applied force Science 270 1653-7
22. Friese M E J, Rubinsztein-Dunlop H, Heckenberg N R and Dearden E W 1996 Determination of the force constant of a single-beam gradient trap by measurement of backscattered light Appl. Opt. 35 7112-16
23. Zimm B H 1986 The Theory of Polymer Dynamics ed M Doi and S Edwards (Oxford: Clarendon)
24. Larson R G, Perkins T T, Smith D E and Chu S 1997 Hydrodynamics of a DNA molecule in a flow field Phys. Rev. E 55 1794-7
25. Smith D E, Perkins T T and Chu S 1996 Dynamical scaling of DNA diffusion coefficients Macromolecules 29 247-85
26. Lorentz H A 1907 Abhandlungen über Theoretische Physik (Leipzig: Teubner) pp 23-42