Functions of the high mobility group protein, Abf2p, in mitochondrial DNA segregation, recombination and copy number in Saccharomyces cerevisiae

Genetics

Volumn 148, Issue 4, 1998, Pages 1763-1776

  Zelenaya Troitskaya, Olga ^a   Newman, Scott M ^a   Okamoto, Koji ^a   Perlman, Philip S ^a   Butow, Ronald A ^a,b  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b University of Texas SW Med Center ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HIGH MOBILITY GROUP PROTEIN; MITOCHONDRIAL DNA;

ARTICLE; DNA RECOMBINATION; MITOCHONDRION; MOLECULAR STABILITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN DNA BINDING; PROTEIN TARGETING; SACCHAROMYCES CEREVISIAE;

BINDING SITES; CROSSING OVER, GENETIC; DNA, MITOCHONDRIAL; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE DOSAGE; HIGH MOBILITY GROUP PROTEINS; RECOMBINATION, GENETIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE; TRIXIS;

EID: 0031943922     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. ASAI, T., S. SOMMER, A. BAILONE and T. KOGOMA, 1993 Homologous recombination-dependent initiation of DNA replication from DNA damage-inducible origins in Escherichia coli. EMBO J. 12: 3287-3295.
2. AZPIROZ, R., and R. A. BUTOW, 1993 Patterns of mitochondrial sorting in yeast zygotes. Mol. Biol. Cell 4: 21-36.
3. BALDACCI, G., B. CHERIF-ZAHAR and G. BERNARDI, 1984 The initiation of DNA replication in the mitochondrial genome of yeast. EMBO J. 3: 2115-2120.
4. BAXEVANIS, A. D., and D. LANDSMAN, 1995 The HMG-1 box protein family: classification and functional relationships. Nucleic Acids Res. 23: 1604-1613.
5. BENDICH, A. J., 1996 Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis. J. Mol. Biol. 255: 564-588.
6. BERBEN, G., J. DUMONT, V. GILLIQUET, P. A. BOLLE and F. HILGER, 1991 The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7: 475-477.
7. CARON, F., C. JACQ and J. ROUVIERE-YANIV, 1979 Characterization of a histone-like protein extracted from yeast mitochondria. Proc. Natl. Acad. Sci. USA 76: 4265-4269.
8. CHEN, D.-C., B.-C. YANG and T.-T. KUO, 1992 One-step transformation of yeast in stationary phase. Curr. Genet. 21: 83-84.
9. CONDE, J., and G. FINK, 1976 A mutant of Saccharomyces cerevisiae defective for nuclear fusion. Proc. Natl. Acad. Sci. USA 73: 3651-3655.
10. DAIRAGHI, D., G. SHADEL and D. CLAYTON, 1995 Addition of a 29 residue carboxyl-terminal tail converts a simple HMG box-containing protein into a transcriptional activator. J. Mol. Biol. 249: 11-28.
11. DIFFLEY, J. F., and B. STILLMAN, 1991 A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria. Proc. Natl. Acad. Sci. USA 88: 7864-7868.
12. DIFFLEY, J. F. X., and B. STILLMAN, 1992 DNA binding properties of an HMG1-related protein from yeast mitochondria. J. Biol. Chem. 267: 3368-3374.
13. DUJON, B., 1981 Mitochondrial genetics and functions, pp. 505-635 in The Molecular Biology of the Yeast Saccharomyces, edited by J. N. STRATHERN, E. W. JONES and J. R. BROACH. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
14. EVANS, D. H., and R. KOLODNER, 1988 Effect of DNA structure and nucleotide sequence on Holliday junction resolution by the Saccharomyces cerevisiae endonuclease. J. Mol. Biol. 201: 69-80.
15. FALCIOLA, L., A. I. H. MURCHIE, D. M. J. LILLEY and M. E. BIANCHI, 1994 Mutational analysis of the DNA binding domain A of chromosomal protein HMG1. Nucleic Acids Res. 22: 285-292.
16. - mitochondrial DNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 10: 10-15.
17. FISHER, R. P., and D. A. CLAYTON, 1988 Purification and characterization of human mitochondrial transcription factor 1. Mol. Cell. Biol. 8: 3496-3509.
18. FISHER, R. P., J. N. TOPPER and D. A. CLAYTON, 1987 Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements. Cell 50: 247-258.
19. FISHER, R. P., T. LISOWSKY, M. A. PARISI and D. A. CLAYTON, 1992 DNA wrapping and bending by a mitochondrial high mobility group-like transcriptional activator protein. J. Biol. Chem. 267: 3358-3367.
20. FORMOSA, T., and B. M. ALBERTS, 1986 DNA synthesis dependent on genetic recombination: characterization of a reaction catalyzed by purified bacteriophage T4 proteins. Cell 47: 793-806.
21. GREENLEAF, A. L., J. L. KELLY and I. R. LEHMAN, 1986 Yeast RPO41 gene is required for transcription and maintenance of the mitochondrial genome. Proc. Natl. Acad. Sci. USA 83: 3391-3394.
22. HALL, R. M., P. NAGLEY and A. W. LINNANE, 1976 Biogenesis of mitochondria. XLII. Genetic analysis of the control of cellular mitochondrial DNA levels in Saccharomyces cerevisiae. Mol. Gen. Genet. 145: 169-175.
23. HERSKOWITZ, I., and R. E. JENSEN, 1991 Putting the HO gene to work: practical uses for mating-type switching. Methods Enzymol. 194: 132-146.
24. HOFFMAN, C. S., and F. WINSTON, 1987 A ten-minute preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57: 267-272.
25. KAO, L. R., T. L. MEGRAW and C. B. CHAE, 1993 Essential role of the HMG domain in the function of yeast mitochondrial histone HM. Functional complementation of HM by the nuclear nonhistone protein NHP6A. Proc. Natl. Acad. Sci. USA 90: 5598-5602.
26. KLEFF, S., B. KEMPER and R. STERNGLANZ, 1992 Identification and characterization of yeast mutants and the gene for a cruciform cutting endonuclease. EMBO J. 11: 699-704.
27. LANDSMAN, D., and M. BUSTIN, 1993 A signature for the HMG-1 box DNA-binding proteins. BioEssays 15: 1-8.
28. LOCKSHON, D., S. G. ZWEIFEL, L. L. FREEMAN-COOK, H. E. LORIMER, B. J. BREWER et al., 1995 A role for recombination junctions in the segregation of mitochondrial DNA in yeast. Cell 81: 947-955.
29. LOPEZ, I. C., F. FARELLY and R. A. BUTOW, 1981 Trans action of the var1 determinant region on yeast mitochondrial DNA. Specific labeling of mitochondrial translation products in zygotes. J. Biol. Chem. 256: 6496-6501.
30. LORIMER, H. E., B. J. BREWER and W. L. FANGMAN, 1995 A test of the transcription model for biased inheritance of yeast mitochondrial DNA. Mol. Cell. Biol. 15: 4803-4809.
31. LUDER, A., and G. MOSIG, 1982 Two alternative mechanisms for intitiation of DNA replication forks in bacteriophage T4: priming by RNA polymerase and recombination. Proc. Natl. Acad. Sci. USA 78: 1101-1105.
32. MALESKA, M. R., P. J. SKELLY and G. D. CLARK-WALKER, 1991 Rolling circle replicaton of DNA in yeast mitochondria. EMBO J. 10: 3923-3929.
33. MEGRAW, T. L., and C. B. CHAE, 1993 Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU. J. Biol. Chem. 268: 12758-12763.
34. MYERS, A. M., A. TZAGOLOFF, D. M. KINNEY and C. J. LUSTY, 1986 Yeast shuttle and integrative vectors with multiple cloning sites suitable for construction of lacZ fusions. Gene 45: 299-310.
35. NAGLEY, P., and A. W. LINNANE, 1972 Studies on the nature of the mitochondrial genome in yeast, the degenerative effects of ethidium bromide on mitochondrial genetic information in a respiratory competent strain. J. Mol. Biol. 66: 181-193.
36. NEWMAN, S. M., O. ZELENAYA-TROITSKAYA, P. S. PERLMAN and R. A. BUTOW, 1996 Analysis of mitochondrial DNA nucleoids in wild-type and a mutant strain of Saccharomyces cerevisiae that lacks the mitochondrial HMG-box protein, Abf2p. Nucleic Acids Res. 24: 386-393.
37. NG, R., and J. ABELSON, 1980 Isolation and sequence of the gene for actin in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 77: 3912-3916.
38. NUNNARI, J., W. F. MARSHALL, A. STRAIGHT, A. MURRAY, J. W. SEDAT et al., 1997 Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA. Mol. Biol. Cell 8: 1233-1242.
39. OGUR, M., R. ST. JOHN and S. NAGAI, 1957 Tetrazolium overlay technique for population studies of respiration deficiency in yeast genetics. Science 125: 928-929.
40. PARIKH, V. S., H. CONRAD-WEBB, R. DOCHERTY and R. A. BUTOW, 1989 Interaction between the yeast mitochondrial and nuclear genomes influences the abundance of novel transcripts derived from the spacer region of the nuclear ribosomal DNA repeat. Mol. Cell. Biol. 9: 1897-1907.
41. PARISI, M. A., and D. A. CLAYTON, 1991 Similarity of human mitochondrial trancription factor 1 to high mobility group proteins. Science 252: 965-969.
42. PARISI, M. A., B. J. Xu and D. A. CLAYTON, 1993 A human mitochondrial transcriptional activator can functionally replace a yeast mitochondrial HMG-box protein both in vivo and in vitro. Mol. Cell. Biol. 13: 1951-1961.
43. PREISER, P. R., R. J, M. WILSON, P. W. MOORE, S. M. MCCREADY, M. HAJIBAGHERI et aL., 1996 Recombination associated with replication of malarial mitochondrial DNA. EMBO J. 15: 684-693.
44. ROSE, M. D., F. WINSTON and P. HEITER, 1988 Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
45. STRAUSBERG, R. L., and P. S. PERLMAN, 1978 The effect of zygotic bud position on the transmission of mitochondrial genes in Saccharomyces cerevisiae. Mol. Gen. Genet. 163: 131-144.
46. TEO, S. H., K. D. GRASSER, C. H. HARDMAN, R. W. BROADHURST, E. D. LAUE et al., 1995 Two mutations in the HMG-box with very different structural consequences provide insights into the nature of binding to four-way junction DNA. EMBO J. 14: 3844-3853.
47. TROITSKAYA, O., P. S. PERLMAN and R. A. BUTOW, 1995 ILV5encodes a bifunctional mitochondrial protein involved in branched chain amino acid biosynthesis and maintenance of mitochondrial DNA. EMBO J. 14: 3268-3276.
48. TZAGOLOFF, A., and A. M. MEYERS, 1986 Genetics of mitochondrial biogenesis. Annu. Rev. Biochcm. 55: 249-285.
49. ULERY, T. L., S. H. JANG and J. A. JAEHNING, 1994 Glucose repression of yeast mitochondrial transcription: kinetics of derepression and role of nuclear genes. Mol. Cell. Biol. 14: 1160-1170.
50. VAN GENT, D. C., K. HIOM, T. T. PAULI and M, GELLERT, 1997 Stimulation of V (D) J cleavage by high mobility group proteins. EMBO J. 16: 2665-2670.
51. VIDA, T. A., T. R. GRAHAM and S. D. EMR, 1990 In vitro reconstitution of intercompartmental protein transport to the yeast vacuole. J. Cell Biol. 111: 2871-2884.
52. WEISLOGEL, P. O., and R. A. BUTOW, 1970 Low temperature and chloramphenicol induction of respiratory deficiency in a cold-sensitive mutant of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 67: 52-58.
53. WILLIAMSON, D. H., and D. J. FENNELL, 1979 Visualization of yeast mitochondrial DNA with the fluorescent stain "DAPI." Methods Enzymol. 56: 728-733.
54. ZINN, A. R., J. K. POHLMAN, P. S. PERLMAN and R. A. BUTOW, 1987 Kinetic and segregational analysis of mitochondrial DNA recombination in yeast. Plasmid 17: 248-256.
55. ZWEIFEL, S. G., and W. L. FANGMAN, 1991 A nuclear mutation reversing a biased transmission of yeast mitochondrial DNA. Genetics 128: 241-249.