The heat-shock gene hsp83 of Drosophila auraria: Genomic organization, nucleotide sequence, and long antiparallel coupled ORFs (LAC ORFs)

Journal of Molecular Evolution

Volumn 46, Issue 3, 1998, Pages 334-343

  Konstantopoulou, Irene ^a   Scouras, Zacharias G ^a  

^a ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

Drosophila auraria; Heat shock (hsp) genes; hsp83; LAC ORFs; Montium subgroup; Overlapping ORFs

Indexed keywords

ARTICLE; DROSOPHILA; GENE SEQUENCE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DROSOPHILA; DROSOPHILA PROTEINS; GENOME; HEAT-SHOCK PROTEINS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PROTOZOAN PROTEINS;

DROSOPHILA AURARIA; MELANOGASTER; MONTIUM SUBGROUP;

EID: 0031938385     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006310     Document Type: Article

References (55)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Ashburner M (1989) Drosophila: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, P 106
3. Becker J, Craig EA (1994) Heat-shock proteins as molecular chaperones. Eur J Biochem 219:11-23
4. Blackman RK, Meselson M (1986) Interspecific nucleotide comparisons used to identify regulatory and structural features of the Drosophila hsp82 gene. J Mol Biol 188:499-515
5. Bork P, Ouzounis C, Sander C, Scharf M, Schneider R, Sonnhammer E (1992) Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosomes III. Protein Sci 1:1677-1690
6. Carbajal ME, Valet J-P, Charest PM, Tanguay RM (1990) Purification of Drosophila hsp83 and immunoelectron microscopic localization. Eur J Cell Biol 52:147-156
7. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium cyanate-phenol-chlorophorm extraction. Anal Biochem 162:156-159
8. Church GM, Gilbert W (1984) Genomic sequencing. Proc Natl Acad Sci USA 81:1991-1995
9. Cutforth T, Rubin G (1994) Mutations in Hsp83 and cdc37 impair signaling by the sevenless receptor tyrosine kinase in Drosophila. Cell 77:1027-1036
10. Doyle HJ, Bishop JM (1993) Torso, a receptor tyrosine kinase required for embryonic pattern formation, shares substrates with the sevenless and EGF-R pathways in Drosophila. Genes Dev 7:633-646
11. Drosopoulou E, Scouras ZG (1995) The β-tubulin gene family evolution in the Drosophila montium subgroup of the melanogaster species group. J Mol Evol 41:293-298
12. Drosopoulou E, Konstantopoulou I, Scouras ZG (1996) The heat shock genes in the Drosophila montium subgroup: chromosomal localization and evolutionary implications. Chromosoma 105:104-110
13. Ellis RJ, van der Vies SM (1991) Molecular chaperones. Annu Rev Biochem 60:321-347
14. Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6-13
15. Felsenstein J (1988) PHYLIP: phytogeny inference package. Cladistics 5:355-356
16. Grantham R, Gautier C, Gouy M, Jacobzone M, Mercier R (1981) Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Res 9:r43-r74
17. Graziosi G, Micali F, Marzari R, de Christini F, Savoini A (1980) Variability of response of early Drosophila embryos to heat shock. J Exp Zool 214:141-145
18. Gupta RS (1995) Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. Mol Biol Evol 12:1063-1073
19. Hackett RW, Lis JT (1983) Localization of the hsp83 transcript within a 3292 nucleotide sequence from the 63B heat shock locus of D. melanogaster. Nucleic Acids Res 11:7011-7030
20. Hess MA, Duncan RF (1996) Sequence and structure determinants of Drosophila Hsp70 mRNA translation: 5′-UTR secondary structure specifically inhibits heat shock protein mRNA translation. Nucleic Acids Res 24:2441-2449
21. Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189-191
22. Holmgren R, Livak K, Morimoto R, Freund R, Meselson M (1979). Studies of cloned sequences from four Drosophila heat shock loci. Cell 18:1359-1370
23. Holmgren R, Corces V, Morimoto R, Blackman R, Meselson M (1981) Sequence homologies in the 5′ regions of four Drosophila heat shock genes. Proc Natl Acad Sci USA 78:3775-3778
24. Hultmark D, Klemenz R, Gehring WJ (1986) Translational and transcriptional control elements in the untranslated leader of the heat shock gene hsp22. Cell 44:429-438
25. Kastritsis CD, Scouras ZG, Ashburner M (1986) Duplications in the polytene chromosomes of Drosophila auraria. Chromosoma 93:381-385
26. Klemenz R, Hultmark D, Gehring WJ (1985) Selective translation of heat shock mRNA in Drosophila melanogaster depends on sequence information in the leader. EMBO J 4:2053-2060
27. Konstantopoulou I, Ouzounis C, Drosopoulou E, Yiangou M, Sideras P, Sander C, Scouras ZG (1995) A Drosophila hsp70 gene contains long antiparallel coupled open reading frames (LAC ORFs) conserved in homologous loci. J Mol Evol 41:414-420
28. LeJohn HB, Camerson LE, Yang B, Rennie SL (1994) Molecular characterization of an NAD-specific glutamate dehydrogenase gene inducible by L-glutamine: antisense gene pair arrangement with L-glutamine-inducible heat shock 70-like protein gene. J Biol Chem 269:4523-4531
29. Lemeunier F, David JR, Tsacas L, Ashburner M (1986) The melanogaster species group. In: Ashburner M, Carson HL, Thompson J (eds) The genetics and biology of Drosophila, vol 3e. Academic Press, London, pp 147-256
30. Lindquist S (1980) Varying patterns of protein synthesis in Drosophila during heat shock: implications for regulation. Dev Biol 77:463-479
31. Lindquist S (1981) Regulation of protein synthesis during heat shock. Nature 293:311-314
32. Lindquist S, Craig E (1988) The heat shock proteins. Annu Rev Genet 22:631-677
33. Mason PJ, Hall LMC, Gausz J (1984) The expression of heat shock genes during normal development in Drosophila melanogaster. Mol Gen Genet 194:73-78
34. McGarry TJ, Lindquist S (1985) The preferential translation of Drosophila hsp70 mRNA requires sequences in the untranslated leader. Cell 42:903-911
35. Nikolaidis N, Scouras ZG (1996) The Drosophila montium subgroup species. Phylogenetic relationships based on mitochondrial DNA analysis. Genome 39:874-883
36. O'Connor D, Lis TJ (1981) Two closely linked transcription units within the 63B heat shock puff of Drosophila melanogaster display strikingly different regulation. Nucleic Acids Res 9:5075-5092
37. Pardue ML (1986) In situ hybridization to DNA of chromosomes and nuclei. In: Roberts DB (ed) Drosophila a practical approach. IRL Press, Oxford, pp 111-137
38. Pauli D, Tissieres A (1990) Stress proteins in biology and medicine. In: Morimoto RI, Tissieres A, Georgopoulos C (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp 361-378
39. Pauli D, Arrigo A-P, Tissieres A (1992) Heat shock response in Drosophila. Experientia 48:623-629
40. Pissios P, Scouras ZG (1993) Mitochondrial DNA evolution in the montium species subgroup of Drosophila. Mol Biol Evol 10:375-382
41. Ritossa FM (1962) A new puffing pattern induced by temperature shock and DNP in Drosophila. Experientia 18:571-573
42. Rutherford SL, Zuker CS (1994) Protein folding and regulation of signaling pathways. Cell 79:1129-1132
43. Sambrook J, Fritch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
44. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
45. Scott M, Pardue ML (1981) Translational control in lysates of Drosophila melanogaster cells. Proc Natl Acad Sci USA 78:3353-3357
46. Scouras ZG (1995) The Drosophila montium subgroup species: recent cytogenetic, molecular, development and evolutionary studies. Bios 3:125-158
47. Scouras ZG, Kastritsis CD (1984) Balbiani rings and puffs of the polytene chromosomes of Drosophila auraria. Chromosoma 89:96-106
48. Scouras ZG, Karamanlidou GA, Kastritsis CD (1986) The influence of heat shock on the puffing pattern of Drosophila auraria polytene chromosomes. Genetica 69:213-218
49. Scouras ZG, Milioni D, Yiangou M, Duchene M, Domdey H (1994) The β-tubulin genes of Drosophial auraria are arranged in a cluster. Curr Genet 25:84-87
50. Sinibaldi RM, Morris PW (1981) Putative function of Drosophila melanogaster heat shock proteins in the nucleoskeleton. J Biol Chem 256:10735-10738
51. Sirotkin K, Davidson N (1982) Developmentally regulated transcription from Drosophila melanogaster chromosomal site 67B. Dev Biol 89:196-210
52. Sorger PK (1991) Heat shock factor and the heat shock response. Cell 65:363-366
53. Storti RV, Scott MP, Rich A, Pardue ML (1980) Translational control of protein synthesis in response to heat shock in D. melanogaster cells. Cell 22:825-834
54. Velasquez JM, Lindquist S (1984) hsp70: nuclear concentration during stress and cytoplasmic storage during recovery. Cell 36:655-662
55. Yost HJ, Lindquist S (1986) RNA splicing is interrupted by heat shock and is rescued by heat shock protein synthesis. Cell 45:185-193