Deadenylation-dependent and -independent decay pathways for α1-tubulin mrna in Chlamydomonas reinhardtii

Molecular and Cellular Biology

Volumn 18, Issue 3, 1998, Pages 1498-1505

  Gera, Joseph F ^a   Baker, Ellen J ^a  

^a UNIVERSITY OF NEVADA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA TUBULIN; CYCLOHEXIMIDE; DNA FRAGMENT;

ADENYLATION; ARTICLE; CHLAMYDOMONAS REINHARDTII; NORTHERN BLOTTING; PRIORITY JOURNAL; RNA ANALYSIS; RNA TRANSLATION; TRANSGENE;

CHLAMYDOMONAS REINHARDTII;

EID: 0031935158     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/mcb.18.3.1498     Document Type: Article

References (35)

1. Baker, E. J. 1997. mRNA polyadenylation: functional implications. Mod. Cell Biol. 17:85-104.
2. Baker, E. J., J. A. Schloss, and J. L. Rosenbaum. 1984. Rapid changes in tubulin RNA synthesis and stability induced by deflagellation in Chlamydomonas. J. Cell Biol. 99:2074-2081.
3. Baker, E. J., L. R. Keller, J. A. Schloss, and J. L. Rosenbaum. 1986. Protein synthesis is required for rapid degradation of tubulin mRNA and other deflagellation-induced RNAs in Chlamydomonas reinhardtii. Mol. Cell. Biol. 6:54-61.
4. Baker, E. J., D. R. Diener, and J. L. Rosenbaum. 1989. Accelerated poly(A) loss on α-tubulin mRNAs during protein synthesis inhibition in Chlamydomonas. J. Mol. Biol. 207:771-781.
5. Baker, E. J., and P. Liggit. 1993. Accelerated poly(A) loss and mRNA stabilization are independent effects of protein synthesis inhibition on α-tubulin mRNA in Chlamydomonas. Nucleic Acids Res. 21:2237-2246.
6. Bashkirov, V. I., H. Scherthan, J. A. Solinger, J.-M. Buerstedde, and W.-D. Heyer. 1997. A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates. J. Cell Biol. 136:761-773.
7. Beelman, C. A., and R. Parker. 1994. Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA. J. Biol. Chem. 269:9687-9692.
8. Beelman, C. A., A. Stevens, G. Caponigro, T. E. LaGrandeur, L. Hatfield, D. M. Fortner, and R. Parker. 1996. An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature 382:642-646.
9. Binder, R. J., J. Horowitz, J. P. Basilion, D. M. Koeller, R. D. Klausner, and J. B. Harford. 1994. Evidence that the pathway of transferrin receptor mRNA degradation involves an endonucleolytic cleavage with the 3′ UTR and does not involve poly(A) tail shortening. EMBO J. 13:1969-1980.
10. Brown, B., and R. Harland. Endonucleolytic cleavage of a maternal homeobox mRNA in Xenopus oocytes. Genes Dev. 4:1925-1935.
11. Caponigro, G., and R. Parker. 1996. Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev. 60:233-249.
12. Chen, C.-Y. A., and A-B Shyu. 1995. AU-rich elements: characterization and importance in mRNA degradation. Trends Biochem. Sci. 20:465-469.
13. Couttet, P., M. Fromont-Racine, D. Steel, R. Pictet, and T. Grange. 1997. Messenger RNA deadenylylation precedes decapping in mammalian cells. Proc. Natl. Acad. Sci. USA 94:5628-5633.
14. Curry, A. M., B. D. Williams, and J. L. Rosenbaum. 1992. Sequence analysis reveals homology between two proteins of the flagellar radial spoke. Mol. Cell. Biol. 12:3967-3977.
15. Decker, C., and R. Parker. 1993. A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev. 7:1632-1643.
16. Harris, E. H. 1989. The Chlamydomonas sourcebook, p. 593-594. Academic Press, Inc., San Diego, Calif.
17. Higgs, D. C., and J. T. Colbert. 1994. Oat phytochrome A mRNA degradation appears to occur via two distinct pathways. Plant Cell 6:1007-1019.
18. Hsu, C. L., and A. Stevens. 1993. Yeast cells lacking 5′→3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure. Mol. Cell. Biol. 13:4826-4835.
19. Kindle, K. L. 1990. High-frequency nuclear transformation of Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 87:1228-1232.
20. Kindle, K. L., R. A. Schnell, E. Fernandez, and P. A. Lefebvre. 1989. Stable nuclear transformation of Chlamydomonas using the Chlamydomonas gene for nitrate reductase. J. Cell Biol. 109:2589-2601.
21. Kozminski, K., D. Diener, and J. Rosenbaum. 1993. High level expression of nonacetylatable α-tubulin in Chlamydomonas reinhardtii. Cell Motil. Cytoskeleton 25:158-170.
22. Kunkel, T. A., J. D. Roberts, and R. A. Zakour. 1987. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154:367-382.
23. Lefebvre, P., and J. L. Rosenbaum. 1986. Regulation of the synthesis and assembly of ciliary and flagellar proteins during regeneration. Annu. Rev. Cell Biol. 2:517-546.
24. 32P-labeled RNA size markers. BioTechniques 17:465-466.
25. Muhlrad, D., and R. Parker. 1994. Premature translation termination triggers mRNA decapping. Nature 370:578-581.
26. Muhlrad, D., C. J. Decker, and R. Parker. 1994. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript. Genes Dev. 8:855-866.
27. Muhlrad, D., C. J. Decker, and R. Parker. 1995. Turnover mechanisms of the stable yeast PGK1 mRNA. Mol. Cell. Biol. 15:2145-2156.
28. Nielsen, F. C., and J. Christiansen. 1992. Endonucleolysis in the turnover of insulin-like growth factor II mRNA. J. Biol. Chem. 267:19404-19411.
29. Rochaix, J.-D., S. Mayfield, M. Goldschmidt-Clermont, and J. Erickson. 1988. Molecular biology of Chlamydomonas, p. 253-275. In C. H. Shaw (ed.). Plant molecular biology - a practical approach. IRL Press, Washington, D.C.
30. Sambrook, J. T., T. Maniatis, and E. F. Fritsch. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
31. Schloss, J. A., C. D. Silflow, and J. L. Rosenbaum. 1984. mRNA abundance changes during flagellar regeneration in Chlamydomonas reinhardtii. Mol. Cell. Biol. 4:424-434.
32. Stoeckle, M. Y., and H. Hanafusa. 1989. Processing of 9E3 mRNA and regulation of its stability in normal and Rous sarcoma virus-transformed cells. Mol. Cell. Biol. 9:4738-4745.
33. Tanzer, M. M., and R. B. Meagher. 1995. Degradation of the soybean ribulose-1,5-bisphosphate carboxylase small-subunit mRNA, SRS4, initiates with endonucleolytic cleavage. Mol. Cell. Biol. 15:6641-6652.
34. Tharun, S., and R. Parker. 1997. mRNA turnover in eukaryotic cells. Mod. Cell Biol. 17:181-198.
35. Tharun, S., and R. Sirdeshmukh. 1995. Specific endonucleolytic cleavages of mouse albumin mRNA and their modulation during liver development. Nucleic Acids Res. 23:641-646.