메뉴 건너뛰기




Volumn 3, Issue 1, 1998, Pages 1-10

A new procedure for constructing peptides into a given Cα chain

Author keywords

Backbone construction; Peptide construction; Peptide orientation; Protein folding

Indexed keywords

PEPTIDE;

EID: 0031933198     PISSN: 13590278     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1359-0278(98)00003-0     Document Type: Article
Times cited : (11)

References (23)
  • 1
    • 0022701772 scopus 로고
    • Using known substructures in protein model building and crystallography
    • Jones, TA & Thirup, S. (1986). Using known substructures in protein model building and crystallography. EMBO J. 5, 819-822.
    • (1986) EMBO J. , vol.5 , pp. 819-822
    • Jones, T.A.1    Thirup, S.2
  • 2
    • 33646274411 scopus 로고
    • Prediction of protein structure from Ca atomic coordinates
    • Boulder CO, USA. Protein Structure Folding & Design 2. (D.L. Oxender, ed), Alan R. Liss, Inc., New York
    • Reid, L.S. & Thornton, J.M. (1987). Prediction of protein structure from Ca atomic coordinates. Proceedings of a GENEX-UCLA symposium, Boulder CO, USA. Protein Structure Folding & Design 2. (D.L. Oxender, ed), pp. 93-102, Alan R. Liss, Inc., New York.
    • (1987) Proceedings of a GENEX-UCLA Symposium , pp. 93-102
    • Reid, L.S.1    Thornton, J.M.2
  • 3
    • 0024527223 scopus 로고
    • Modelling the polypeptide backbone with 'spare parts' from known protein structures
    • Claessens, M., van Cutsem, E., Lasters, I. & Wodak, S. (1989). Modelling the polypeptide backbone with 'spare parts' from known protein structures. Protein Eng. 2, 335-345.
    • (1989) Protein Eng. , vol.2 , pp. 335-345
    • Claessens, M.1    Van Cutsem, E.2    Lasters, I.3    Wodak, S.4
  • 4
    • 0024570937 scopus 로고
    • Rebuilding flavodoxin from Cα coordinates: A test study
    • Reid, L.S. & Thornton, J.M. (1989). Rebuilding flavodoxin from Cα coordinates: a test study. Proteins 5, 170-182.
    • (1989) Proteins , vol.5 , pp. 170-182
    • Reid, L.S.1    Thornton, J.M.2
  • 5
    • 0025978283 scopus 로고
    • Database algorithm for generating protein backbone and sidechain coordinates from Co trace application to model building and detection of coordinate errors
    • Holm, L. & Sander, C. (1991). Database algorithm for generating protein backbone and sidechain coordinates from Co trace application to model building and detection of coordinate errors. J. Mol. Biol. 218, 183-194.
    • (1991) J. Mol. Biol. , vol.218 , pp. 183-194
    • Holm, L.1    Sander, C.2
  • 6
    • 0021460399 scopus 로고
    • Conversion from a virtual-bond chain to a complete polypeptide backbone chain
    • Purisima, E.O. & Scheraga, H.A. (1984). Conversion from a virtual-bond chain to a complete polypeptide backbone chain. Biopolymers 23, 1207-1224.
    • (1984) Biopolymers , vol.23 , pp. 1207-1224
    • Purisima, E.O.1    Scheraga, H.A.2
  • 7
    • 0026540486 scopus 로고
    • Building protein backbones from Ca coordinates
    • Luo, Y., Jiang, X., Lai, L., Qu, C., Xu, X. & Tang, Y. (1992). Building protein backbones from Ca coordinates. Protein Eng. 5, 147-150.
    • (1992) Protein Eng. , vol.5 , pp. 147-150
    • Luo, Y.1    Jiang, X.2    Lai, L.3    Qu, C.4    Xu, X.5    Tang, Y.6
  • 8
    • 0027529023 scopus 로고
    • Reconstruction of protein conformations from estimated positions of the Ca coordinates
    • Payne, P.W. (1993). Reconstruction of protein conformations from estimated positions of the Ca coordinates. Protein Sci. 2, 315-324.
    • (1993) Protein Sci. , vol.2 , pp. 315-324
    • Payne, P.W.1
  • 9
    • 0027524668 scopus 로고
    • Calculation of protein backbone geometry from α-carbon coordinates based on peptide-group dipole alignment
    • Liwo, A., Pincus, M.R., Wawak, R.J., Rackovsky, S. & Scheraga, H.A. (1993). Calculation of protein backbone geometry from α-carbon coordinates based on peptide-group dipole alignment. Protein Sci. 2, 1697-1714.
    • (1993) Protein Sci. , vol.2 , pp. 1697-1714
    • Liwo, A.1    Pincus, M.R.2    Wawak, R.J.3    Rackovsky, S.4    Scheraga, H.A.5
  • 10
    • 84986513586 scopus 로고
    • Efficient algorithm for the reconstruction of a protein backbone from the α-carbon coordinates
    • Rey, A. & Skolnick, J. (1992). Efficient algorithm for the reconstruction of a protein backbone from the α-carbon coordinates. J. Comp. Chem. 13, 443-456.
    • (1992) J. Comp. Chem. , vol.13 , pp. 443-456
    • Rey, A.1    Skolnick, J.2
  • 11
    • 0026439783 scopus 로고
    • Application of a directed conformational search for generating 3-D coordinates for protein structures from α-carbon coordinates
    • Bassolino-Klimas, D. & Bruccoleri, R.E. (1992). Application of a directed conformational search for generating 3-D coordinates for protein structures from α-carbon coordinates. Proteins 14, 465-474.
    • (1992) Proteins , vol.14 , pp. 465-474
    • Bassolino-Klimas, D.1    Bruccoleri, R.E.2
  • 12
    • 0025288651 scopus 로고
    • The building of protein structures from α-carbon coordinates
    • Correa, P.E. (1990). The building of protein structures from α-carbon coordinates. Proteins 7, 366-377.
    • (1990) Proteins , vol.7 , pp. 366-377
    • Correa, P.E.1
  • 13
    • 0028012281 scopus 로고
    • A molecular dynamics approach for the generation of complete protein structures from limited coordinates data
    • van Gelder, C.W.G., Leusen, F.J.J., Leunissen, J.A.M. & Noordik, J.H. (1994). A molecular dynamics approach for the generation of complete protein structures from limited coordinates data. Proteins 18, 174-185.
    • (1994) Proteins , vol.18 , pp. 174-185
    • Van Gelder, C.W.G.1    Leusen, F.J.J.2    Leunissen, J.A.M.3    Noordik, J.H.4
  • 14
    • 0028980317 scopus 로고
    • Building proteins from Ca coordinates using the dihedral probability grid Monte Carlo method
    • Mathiowetz, A.M. & Goddard III, W.A. (1995). Building proteins from Ca coordinates using the dihedral probability grid Monte Carlo method. Protein Sci. 4, 1217-1232.
    • (1995) Protein Sci. , vol.4 , pp. 1217-1232
    • Mathiowetz, A.M.1    Goddard III, W.A.2
  • 15
    • 0016131619 scopus 로고
    • Low-energy structures of two dipeptides and their relationship to bend conformations
    • Nishikawa, K., Momany, F.A. & Scheraga, H.A. (1974). Low-energy structures of two dipeptides and their relationship to bend conformations. Macromolecules 7, 797-806.
    • (1974) Macromolecules , vol.7 , pp. 797-806
    • Nishikawa, K.1    Momany, F.A.2    Scheraga, H.A.3
  • 17
    • 0021603710 scopus 로고
    • Structure of bovine pancreatic trypsin inhibitor: Results of joint neutron and X-ray refinement of crystal form II
    • Wlodawer, A., Walter, J., Huber, R. & Sjolin, L. (1984). Structure of bovine pancreatic trypsin inhibitor: results of joint neutron and X-ray refinement of crystal form II. J. Mol. Biol. 180, 301-329.
    • (1984) J. Mol. Biol. , vol.180 , pp. 301-329
    • Wlodawer, A.1    Walter, J.2    Huber, R.3    Sjolin, L.4
  • 18
    • 0022317995 scopus 로고
    • Erabutoxin b. Initial protein refinement and sequence analysis at 0.140-nm resolution
    • Bourne, P.E., Sato, A., Corfield, P.W.R., Rosen, L.S., Birken, S. & Low, B.W. (1985). Erabutoxin b. Initial protein refinement and sequence analysis at 0.140-nm resolution. Eur. J. Biochem. 153, 521-527.
    • (1985) Eur. J. Biochem. , vol.153 , pp. 521-527
    • Bourne, P.E.1    Sato, A.2    Corfield, P.W.R.3    Rosen, L.S.4    Birken, S.5    Low, B.W.6
  • 19
    • 0028177309 scopus 로고
    • Local polarity analysis: A sensitive method that discriminates between native proteins and incorrectly folded models
    • Luthardt, G. & Frommel, C. (1994). Local polarity analysis: a sensitive method that discriminates between native proteins and incorrectly folded models. Protein Eng. 7, 627-631.
    • (1994) Protein Eng. , vol.7 , pp. 627-631
    • Luthardt, G.1    Frommel, C.2
  • 20
    • 0027102226 scopus 로고
    • OBSTRUCT: A program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity
    • Heringa, J., Sommerfeldt, H., Higgins, D. & Argos, P. (1992). OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity. CABIOS 8, 599-600.
    • (1992) CABIOS , vol.8 , pp. 599-600
    • Heringa, J.1    Sommerfeldt, H.2    Higgins, D.3    Argos, P.4
  • 21
    • 0028205447 scopus 로고
    • Enlarged representative set of protein structures
    • Hobohm, U. & Sander, C. (1994). Enlarged representative set of protein structures. Protein Sci. 3, 522-524.
    • (1994) Protein Sci. , vol.3 , pp. 522-524
    • Hobohm, U.1    Sander, C.2
  • 23
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.