Horizontal spread of mer operons among Gram-positive bacteria in natural environments

Microbiology

Volumn 144, Issue 3, 1998, Pages 609-620

  Bogdanova, E S ^a   Bass, I A ^a   Minakhin, L S ^a   Petrova, M A ^a,b   Mindlin, S Z ^a   Volodin, A A ^a   Kalyaeva, E S ^a   Tiedje, J M ^b   Hobman, J L ^c   Brown, N L ^c   Nikiforov, V G ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

Bacillus; Class II transposons; Enterococcus; Horizontal gene transfer; mer operon; Tn1546

Indexed keywords

BACTERIAL DNA; MERCURY; ORGANOMERCURY COMPOUND; OXIDOREDUCTASE; RECOMBINANT DNA; RIBOSOME RNA; TOXIC SUBSTANCE;

ADAPTATION; AMINO TERMINAL SEQUENCE; ANTIBIOTIC RESISTANCE; ARTICLE; BACILLUS; BACTERIAL GENETICS; CONTROLLED STUDY; DNA SEQUENCE; DRUG RESISTANCE; ENTEROCOCCUS; GENE EXPRESSION; GENE TRANSFER; GENETIC VARIABILITY; GRAM POSITIVE BACTERIUM; NONHUMAN; OPERON; PHENOTYPE; PLASMID; POLLUTANT; POLLUTION; PRIORITY JOURNAL; RESTRICTION MAPPING; TRANSPOSON;

BACILLUS; BACTERIA (MICROORGANISMS); ENTEROCOCCUS; POSIBACTERIA; PROKARYOTA;

EID: 0031931693     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-144-3-609     Document Type: Article

References (56)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Arthur, M., Molinas, C., Depardieu, T. & Courvalin, P. (1993). Characterization of Tn1546, a Tn3-related transposon conferring glycopeptide resistance by synthesis of depsipeptide peptidoglycan precursors in Enterococcus faecium BM 4147. J Bacteriol 175, 117-127.
3. Ash, C., Farrow, J. A. E., Dorsch, M., Stackebrandt, E. & Collins, M. D. (1991). Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA. Int J Syst Bacteriol 41, 343-346.
4. Begley, T. P., Walts, A. E. & Walsh, C. T. (1986). Mechanistic studies of a protonolytic organomercurial cleaving enzyme: bacterial organomercurial lyase. Biochemistry 25, 7192-7200.
5. Belliveau, B. H. & Trevors, J. T. (1990). Mercury resistance determined by a self-transmissible plasmid in Bacillus cereus 5. Bio Metals 3, 188-196.
6. Birnboim, H. C. & Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7, 1513-1523.
7. Bogdanova, E. S. & Mindlin, S. Z. (1989). Two structural types of mercury reductases and possible ways of their evolution. FEBS Lett 247, 333-336.
8. Bogdanova, E. S. & Mindlin, S. Z. (1991). Occurrence of two structural types of mercury reductases among Gram-positive bacteria. FEMS Microbiol Lett 78, 277-280.
9. Bogdanova, E. S., Mindlin, S. Z., Kalyaeva, E. S. & Nikiforov, V. G. (1988). The diversity of mercury reductases among mercury-resistant bacteria. FEBS Lett 234, 280-282.
10. Bogdanova, E. S., Mindlin, S. Z., Pakrova, E., Kocur, M. & Rouch, D. A. (1992). Mercuric reductase in environmental Gram-positive bacteria sensitive to mercury. FEMS Microbiol Lett 97, 95-100.
11. Brown, N. L., Lund, P. L. & Ni'Bhrian, N. (1989). Mercury resistance in bacteria. In The Genetics of Bacterial Diversity, pp. 175-195. Edited by D. A. Hopwood & K. F. Chafer. London & New York : Academic Press.
12. de Bruijn, F. J. (1992). Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl Environ Microbiol 58, 2180-2187.
13. Cano, R. J., Borucki, M. K., Higby-Schweitzer, M., Poinar, H. N., Poinar, G. O., Jr & Pollard, K. J. (1994). Bacillus DNA in fossil bees: an ancient symbiosis? Appl Environ Microbiol 60, 2164-2167.
14. Claus, D. & Berkely, R. C. W. (1986). Genus Bacillus Cohn 1872, 174 AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. C. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
15. Dornbush, A. C. & Pelcak, E. J. (1948). Assay of aureomycin level in body fluid. Ann NY Acad Sci 51, 218-220.
16. Gadd, G. M. (1990). Metal tolerance. In Microbiology of Extreme Environments, pp. 179-210. Edited by C. Edwards. Milton Keynes: Open University Press.
17. Gilbert, M. P. & Summers, A. O. (1988). The distribution and divergence of DNA sequences related to Tn21 and Tn501 mer operons. Plasmid 20, 127-136.
18. Gilichinsky, D. A., Vorobyova, E. A., Erochina, L. G., Fyodorov-Davydov, D. G. & Chaikovskaya, N. R. (1992). Long-term preservation of microbial ecosystems in permafrost. Adv Space Res 12, (4)255-(4)263.
19. Grinsted, J., De La Cruz, F. & Schmitt, R. (1990). The Tn21 subgroup of bacterial transposable elements. Plasmid 24, 163-189.
20. Hobman, J. L. & Brown, N. L. (1997). Bacterial mercury resistance genes. In Metal Ions in Biological Systems, vol. 34, pp. 527-567. Edited by H. Sigel & A. Sigel. New York: Marcel Dekker.
21. Hobman, J. L., Kholodii, G. Ya., Nikiforov, V. G., Ritchie, D. A., Strike, P. & Yurieva, O. V. (1994). The sequence of the mer operon of pMER 327/419 and transposon ends of pMER.327/419, 330 and 05. Gene 146, 73-78.
22. Johansen, T., Carlson, C. R. & Kolsto, A.-B. (1996). Variable numbers of rRNA gene operons in Bacillus cereus strains. FEMS Microbiol Lett 136, 325-328.
23. Kholodii, G. Ya., Gorlenko, Zh. M., Lomovskaya, O. L., Mindlin, S.Z., Yurieva, O. V. & Nikiforov, V. G. (1993a). Molecular characterization of an aberrant mercury resistance transposable element from an environmental Acinetobacter strain. Plasmid 30, 303-308.
24. Kholodii, G. Ya., Yurieva, O. V., Lomovskaya, O. L., Gorlenko, Zh. M., Mindlin, S.Z. & Nikiforov, V. G. (1993b). Tn5053, a mercury resistance transposon with integron's ends. J Mol Biol 230, 1103-1107.
25. Kholodii, G. Ya., Mindlin, S. Z., Bass, I. A., Yurieva, O. V., Minakhina, S. V. & Nikiforov, V. G. (1995). Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 6, 1189-1200.
26. Kholodii, G. Ya., Yurieva, O. V., Gorlenko, Zh. M., Mindlin, S. Z., Bass, I. A., Lomovskaya, O. L., Kopteva, A. V. & Nikiforov, V. G. (1997). Tn5041: a chimeric mercury resistance transposon closely related to the toluene degradative transposon Tn4651. Microbiology 143, 2549-2556.
27. Laddaga, R. A., Chu, L., Misra, T. K. & Silver, S. (1987). Nucleotide sequence and expression of the mercurial resistance operon from Staphylococcus aureus plasmid pI258. Proc Natl Acad Sci USA 84, 5106-5110.
28. Liebert, C. A., Wireman, J., Smith, T. & Summers, A. O. (1997). Phylogeny of mercury resistance (mer) operons of Gram-negative bacteria isolated from the fecal flora of primates. Appl Environ Microbiol 63, 1066-1076.
29. Mahler, I., Levinson, H. S., Wang, Y. & Halvorson, H. O. (1986). Cadmium-and mercury-resistant Bacillus strains from a salt marsh and from Boston Harbor. Appl Environ Microbiol 52, 1293-1298.
30. Maidak, B. L., Larsen, N., McGaughey, M. J, Overbek, R., Olson, G. J., Fogell, K., Blandy, J. & Woese, C. R. (1994). The Ribosomal Database Project. Nucleic Acids Res 22, 3485-3487.
31. Milkman, R. & McKane, M. (1995). DNA sequence variation and recombination in E. coli. In The Population Genetics of Bacteria (Society for General Microbiology Symposium vol. 52), pp. 127-142. Edited by S. Baumberg, J. P. W. Young, E. M. H. Wellington & J. R. Saunders. Cambridge: Cambridge University Press.
32. Misra, T. K. (1992). Bacterial resistances to inorganic mercury salts and organomercurials. Plasmid 25, 4-16.
33. Nakahara, H., Ishikawa, T., Sarai, Y., Kondo, I. & Mitsuhashi, S. (1977). Frequency of heavy-metal resistance in bacteria from inpatients in Japan. Nature 266, 165-167.
34. Nakamura, K. & Silver, S. (1994). Molecular analysis of mercury-resistant Bacillus isolates from sediment of Minamata Bay, Japan. Appl Environ Microbiol 60, 4596-4599.
35. Ochman, H. & Wilson, A. C. (1987). Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol 26, 74-84.
36. Olson, B. H., Lester, J. N., Cayless, S. M. & Ford, S. (1989). Distribution of mercury resistance determinants in bacterial communities of river sediments. Wat Res 23, 1209-1217.
37. Osborn, A. M., Bruce, K. D., Strike, P. & Ritchie, D. A. (1995). Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Syst Appl Microbiol 18, 1-6.
38. Osborn, A. M., Bruce, K. D., Ritchie, D. A. & Strike, P. (1996). The mercury resistance operon of the Inc J plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology 142, 337-345.
39. Osborn, A. M., Bruce, K. D., Strike, P. & Ritchie, D. A. (1997). Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiol Rev 19, 239-262.
40. Reniero, D., Galli, E. & Barbieri, P. (1995). Cloning and comparison of mercury-and organomercurial-resistance determinants from a Pseudomonas stutzeri plasmid. Gene 166, 77-82.
41. Roberts, M. S. & Cohan, F. M. (1995). Recombination and migration rates in natural populations of Bacillus subtilis and Bacillus mojavensis. Evolution 49, 1081-1094.
42. Robinson, J. B. & Tuovinen, O. H. (1984). Mechanisms of microbial resistance and detoxification of mercury and organomercury compounds: physiological, biochemical and genetic analyses. Microbiol Rev 48, 95-124.
43. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
44. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467.
45. Sedlmeier, R. & Altenbuchner, J. (1992). Cloning and DNA sequence analysis of the mercury resistance genes of Streptomyces lividans. Mol Gen Genet 236, 76-85.
46. Shiratori, T., Inoue, C., Sugawara, K., Kusano, T. & Kitigawa, Y. (1989). Cloning and expression of Thiobacillus ferrooxidans mercury ion resistance genes in Escherichia coli. J Bacteriol 171, 3458-3464.
47. Siemieniak, D. R., Slightom, J. L. & Chung, S. T. (1990). Nucleotide sequence of Streptomyces fradiae transposable element Tn4556 : a class II transposon related to Tn3. Gene 86, 1-9.
48. Silver, S. & Phung, L. T. (1996). Bacterial heavy metal resistance: new surprises. Annu Rev Microbiol 50, 753-789.
49. Summers, A. O. (1986). Organization, expression and evolution of genes for mercury resistance. Annu Review Microbiol 40, 607-634.
50. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
51. Wang, Y., Mahler, I., Levinson, H. S. & Hallorson, H. O. (1987). Cloning and expression in Escherichia coli of chromosomal mercury resistance genes from a Bacillus sp. J Bacteriol 169, 4848-4851.
52. Wang, Y., Moore, M., Levinson, H. S., Silver, S., Walsh, C. & Mahler, I. (1989). Nucleotide sequence of a chromosomal mercury resistance determinant from a Bacillus sp. with broad-spectrum mercury resistance. J Bacteriol 171, 83-92.
53. Witte, W., Green, L., Misra, T. K. & Silver, S. (1986). Resistance to mercury and to cadmium in chromosomally resistant Staphylococcus aureus. Antimicrob Agents Chemother 29, 663-669.
54. Yurieva, O. & Nikiforov, V. (1996). Catalytic center quest: comparison of transposases belonging to the Tn3 family reveals an invariant triad of acidic amino acid residues. Biochem Mol Biol Int 38, 15-20.
55. Yurieva, O. V., Kholodii, G. Ya., Minakhin, L. S., Gorlenko, Zh. M., Kalyaeva, E. S., Mindlin, S. Z. & Nikiforov, V. G. (1997). Intercontinental spread of promiscuous mercury resistance operons in environmental bacteria. Mol Microbiol 24, 321-329.
56. Zharkikh, A. A., Rzhetsky, A. Yu., Morosov, P. S., Sitnikova, T. L. & Krushkal, J. S. (1991). VOSTORG: a package of microcomputer programs for sequence analysis and construction on phylogenetic trees. Gene 101, 251-254.