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DNA sequence from the quagga, an extinct member of the horse family
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Higuchi, R.1
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2
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0031470484
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Neandertal DNA sequence and the origin of modern humans
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of outstanding interest. The most impressive ancient DNA project to date, this work demonstrates the considerable amounts of effort and molecular biology necessary to authenticate sequences from such a different subject. The resulting Neandertal sequence is clearly outside the range of modern human DNA, answering a previously intractable anthropological question, and raising the possibility of analysing Neandertal population genetics.
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Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S. Neandertal DNA sequence and the origin of modern humans. of outstanding interest Cell. 90:1997;19-30 The most impressive ancient DNA project to date, this work demonstrates the considerable amounts of effort and molecular biology necessary to authenticate sequences from such a different subject. The resulting Neandertal sequence is clearly outside the range of modern human DNA, answering a previously intractable anthropological question, and raising the possibility of analysing Neandertal population genetics.
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Cell
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Krings, M.1
Stone, A.2
Schmitz, R.W.3
Krainitzki, H.4
Stoneking, M.5
Pääbo, S.6
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3
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0000832946
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Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
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Proc Natl Acad Sci USA
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Lindahl T. Instability and decay of the primary structure of DNA. Nature. 362:1993;709-715.
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Nature
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Lindahl, T.1
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5
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DNA damage and DNA sequence retrieval from ancient tissues
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of special interest. Chemical studies reveal that, whereas several forms of modified bases are detectable in ancient DNA, hydantoin derivatives of pyrimidines are strongly associated with an inability to amplify DNA by PCR. This may provide a way to assess the likelihood of amplifiable DNA in samples, or a target for enzymatic repair of ancient DNA.
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Höss M, Jaruga P, Zastawny TH, Dizdaroglu M, Pääbo S. DNA damage and DNA sequence retrieval from ancient tissues. of special interest Nucl Acids Res. 24:1996;1304-1307 Chemical studies reveal that, whereas several forms of modified bases are detectable in ancient DNA, hydantoin derivatives of pyrimidines are strongly associated with an inability to amplify DNA by PCR. This may provide a way to assess the likelihood of amplifiable DNA in samples, or a target for enzymatic repair of ancient DNA.
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Nucl Acids Res
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Höss, M.1
Jaruga, P.2
Zastawny, T.H.3
Dizdaroglu, M.4
Pääbo, S.5
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7
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0001215415
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Authenticating DNA extracted from ancient skeletal remains
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Richards MB, Sykes BC, Hedges REM. Authenticating DNA extracted from ancient skeletal remains. J Arch Science. 22:1995;291-299.
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Richards, M.B.1
Sykes, B.C.2
Hedges, R.E.M.3
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8
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0029834127
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The retrieval of ancient human DNA sequences
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of outstanding interest. An important study demonstrating that DNA from 600 year-old human remains contained several contaminants which were only distinguishable when PCR products were cloned and sequenced. The results suggest that when PCR amplifications start from less than 40 copies of ancient DNA, cloning is advisable to determine the reliability of sequences.
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Handt O, Krings M, Ward RH, Pääbo S. The retrieval of ancient human DNA sequences. of outstanding interest Am J Hum Genet. 59:1996;368-376 An important study demonstrating that DNA from 600 year-old human remains contained several contaminants which were only distinguishable when PCR products were cloned and sequenced. The results suggest that when PCR amplifications start from less than 40 copies of ancient DNA, cloning is advisable to determine the reliability of sequences.
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(1996)
Am J Hum Genet
, vol.59
, pp. 368-376
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Handt, O.1
Krings, M.2
Ward, R.H.3
Pääbo, S.4
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9
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0030938598
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Reply to stoneking: Ancient DNA - How do you really know when you have it?
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Cooper A. Reply to stoneking: ancient DNA - how do you really know when you have it? Am J Hum Genet. 60:1997;1001-1002.
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Am J Hum Genet
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Cooper, A.1
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10
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0031239254
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Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair
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Gagneux P, Boesch C, Woodruff DS. Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair. Mol Ecol. 6:1997;861-868.
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Mol Ecol
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Gagneux, P.1
Boesch, C.2
Woodruff, D.S.3
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11
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Recovery of antediluvian DNA
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Lindahl T. Recovery of antediluvian DNA. Nature. 365:1993;700.
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(1993)
Nature
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Lindahl, T.1
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12
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0029652459
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Detecting dinosaur DNA
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Zischler H, Höss M, Handt O, von Haeseler A, van der Kuyl AC, Goudsmit J, Pääbo S. Detecting dinosaur DNA. Science. 268:1995;1192-1193.
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Science
, vol.268
, pp. 1192-1193
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Zischler, H.1
Höss, M.2
Handt, O.3
Von Haeseler, A.4
Van Der Kuyl, A.C.5
Goudsmit, J.6
Pääbo, S.7
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13
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0028184510
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Molecular genetic analyses of the Tyrolean ice man
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Handt O, Richards M, Trommsdorff M, Kilger C, Simanainen J, Georgiev O, Bauer K, Stone A, Hedges R, Schaffner W, et al. Molecular genetic analyses of the Tyrolean ice man. Science. 264:1994;1775-1778.
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Science
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Handt, O.1
Richards, M.2
Trommsdorff, M.3
Kilger, C.4
Simanainen, J.5
Georgiev, O.6
Bauer, K.7
Stone, A.8
Hedges, R.9
Schaffner, W.10
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14
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0029687530
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Reproducibility of ancient DNA sequences from extinct Pleistocene fauna
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Taylor PG. Reproducibility of ancient DNA sequences from extinct Pleistocene fauna. Mol Biol Evol. 13:1996;283-285.
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Mol Biol Evol
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Taylor, P.G.1
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15
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0031284940
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Paleontology in a molecular world: The search for authentic ancient DNA
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Austin JJ, Smith AB, Thomas RH. Paleontology in a molecular world: the search for authentic ancient DNA. Trends Ecol EvoIE. 8:1997;303-306.
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Trends Ecol EvoIE
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Austin, J.J.1
Smith, A.B.2
Thomas, R.H.3
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16
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0031241468
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Ancient DNA from amber fossil bees?
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Walden KO, Robertson HM. Ancient DNA from amber fossil bees? Mol Biol Evol. 14:1997;1075-1077.
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(1997)
Mol Biol Evol
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Walden, K.O.1
Robertson, H.M.2
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17
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0030739282
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DNA similarity analysis of a putative ancient bacterial isolate obtained from amber
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Yousen AA, Rippere KE. DNA similarity analysis of a putative ancient bacterial isolate obtained from amber. FEMS Microbiol Lett. 152:1997;345-347.
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FEMS Microbiol Lett
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Yousen, A.A.1
Rippere, K.E.2
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18
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0030805510
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Problems of reproducibility - Does geologically ancient DNA survive in amber preserved insects?
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of outstanding interest. Analysis of a large number of amber specimens, ranging in age from less than 2 million-years to more than 40, produced only contaminating sequences suggesting that amber preserved DNA is unlikely, and that previous reports are probably erroneous. This important research probably should have been performed at least five years ago.
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Austin JJ, Ross AJ, Smith AB, Fortey RA, Thomas RH. Problems of reproducibility - does geologically ancient DNA survive in amber preserved insects? of outstanding interest Proc R Soc Lond B Biol Sci. 264:1997;467-474 Analysis of a large number of amber specimens, ranging in age from less than 2 million-years to more than 40, produced only contaminating sequences suggesting that amber preserved DNA is unlikely, and that previous reports are probably erroneous. This important research probably should have been performed at least five years ago.
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(1997)
Proc R Soc Lond B Biol Sci
, vol.264
, pp. 467-474
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Austin, J.J.1
Ross, A.J.2
Smith, A.B.3
Fortey, R.A.4
Thomas, R.H.5
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19
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0029663543
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Amino acid racemization and the preservation of ancient DNA
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of outstanding interest. This study correlates the biochemical degradation of proteins in preserved specimens with the preservation of ancient DNA. The results provide limited support for amber DNA but indicate that, with the exception of permafrost material, most specimens over several thousand years old are unlikely to contain DNA.
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Poinar HN, Höss M, Bada JL, Pääbo S. Amino acid racemization and the preservation of ancient DNA. of outstanding interest Science. 272:1996;864-866 This study correlates the biochemical degradation of proteins in preserved specimens with the preservation of ancient DNA. The results provide limited support for amber DNA but indicate that, with the exception of permafrost material, most specimens over several thousand years old are unlikely to contain DNA.
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(1996)
Science
, vol.272
, pp. 864-866
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Poinar, H.N.1
Höss, M.2
Bada, J.L.3
Pääbo, S.4
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20
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0021802416
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Molecular cloning of ancient Egyptian mummy DNA
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Pääbo S. Molecular cloning of ancient Egyptian mummy DNA. Nature. 314:1985;644-645.
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(1985)
Nature
, vol.314
, pp. 644-645
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Pääbo, S.1
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21
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0027996747
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Tracking the origins of the cave bear (Ursus spelaeus) by mitochondrial DNA sequencing
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Hänni C, Laudet V, Stehelin D, Taberlet P. Tracking the origins of the cave bear (Ursus spelaeus) by mitochondrial DNA sequencing. Proc Natl Acad Sci USA. 91:1994;12336-12340.
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(1994)
Proc Natl Acad Sci USA
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Hänni, C.1
Laudet, V.2
Stehelin, D.3
Taberlet, P.4
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22
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0026630020
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Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea
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Janczweski DN, Yuhki N, Gilbert DA, Jefferson GT, O'Brien SJ. Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea. Proc Natl Acad Sci USA. 89:1992;9769-9773.
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Proc Natl Acad Sci USA
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Janczweski, D.N.1
Yuhki, N.2
Gilbert, D.A.3
Jefferson, G.T.4
O'Brien, S.J.5
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23
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0030052888
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Molecular phylogeny of the extinct ground sloth Mylodon darwinii
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of special interest. Relatively long (1100 bp) mitochondrial sequences recovered from the extinct ground sloth Mylodon darwinii are compared to those of living edentates to reveal that the arboreal life style evolved at least twice. Other implications are that the Edentate order contains ancient lineages which diverged before the end of the Cretaceous period.
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Höss M, Dilling A, Currant A, Pääbo S. Molecular phylogeny of the extinct ground sloth Mylodon darwinii. of special interest Proc Natl Acad Sci USA. 93:1995;181-185 Relatively long (1100 bp) mitochondrial sequences recovered from the extinct ground sloth Mylodon darwinii are compared to those of living edentates to reveal that the arboreal life style evolved at least twice. Other implications are that the Edentate order contains ancient lineages which diverged before the end of the Cretaceous period.
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(1995)
Proc Natl Acad Sci USA
, vol.93
, pp. 181-185
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-
Höss, M.1
Dilling, A.2
Currant, A.3
Pääbo, S.4
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24
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0002327930
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Studies of avian ancient DNA: From Jurassic Park to modern island extinctions
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Mindell D.P. San Diego: Academic Press
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Cooper A. Studies of avian ancient DNA: from Jurassic Park to modern island extinctions. Mindell DP. Avian Molecular Evolution and Systematics. 1997;345-373 Academic Press, San Diego.
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Avian Molecular Evolution and Systematics
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Cooper, A.1
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26
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0030894343
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Phylogenetic position of mammoth and Steller's sea cow within Tethytheria demonstrated by mitochondrial DNA sequences
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of special interest. A molecular phylogeny of the Tethytheria is created using 1000bp sequences of the extinct mammoth and Stellars sea cow. The data strongly suggest that the African elephant is a sister taxon to the mammoth and Asian elephant, and that splits within Sirenia were deeper than previously thought.
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Ozawa T, Hayashi S, Mikhelson VM. Phylogenetic position of mammoth and Steller's sea cow within Tethytheria demonstrated by mitochondrial DNA sequences. of special interest J Mol Evol. 44:1997;406-413 A molecular phylogeny of the Tethytheria is created using 1000bp sequences of the extinct mammoth and Stellars sea cow. The data strongly suggest that the African elephant is a sister taxon to the mammoth and Asian elephant, and that splits within Sirenia were deeper than previously thought.
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(1997)
J Mol Evol
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, pp. 406-413
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Ozawa, T.1
Hayashi, S.2
Mikhelson, V.M.3
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27
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0025050769
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Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens
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Thomas WK, Pääbo S, Villablanca FX, Wilson AC. Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. J Mol Evol. 31:1990;101-112.
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(1990)
J Mol Evol
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Thomas, W.K.1
Pääbo, S.2
Villablanca, F.X.3
Wilson, A.C.4
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28
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0027320140
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DNA extraction from Pleistocene bones by a silica-based extraction method
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Höss M, Pääbo S. DNA extraction from Pleistocene bones by a silica-based extraction method. Nucl Acids Res. 21:1993;3913-3914.
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(1993)
Nucl Acids Res
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Höss, M.1
Pääbo, S.2
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29
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0028088277
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DNA from ancient mammoth bones
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Hagelberg E, Thomas MG, Cook CE, Sher AV, Baryshnikov GF, Lister AM. DNA from ancient mammoth bones. Nature. 370:1994;333-334.
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Nature
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Hagelberg, E.1
Thomas, M.G.2
Cook, C.E.3
Sher, A.V.4
Baryshnikov, G.F.5
Lister, A.M.6
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31
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0027445376
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Ancient DNA from a pre-Columbian Amerindian population
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Stone AC, Stoneking M. Ancient DNA from a pre-Columbian Amerindian population. Am J Phys Anthropol. 92:1993;463-471.
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(1993)
Am J Phys Anthropol
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Stone, A.C.1
Stoneking, M.2
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32
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0028811070
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Ancient DNA: How do you know when you have it and what can you do with it?
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Stoneking M. Ancient DNA: how do you know when you have it and what can you do with it? Am J Hum Genet. 57:1995;1259-1262.
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(1995)
Am J Hum Genet
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Stoneking, M.1
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33
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0030052760
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Sex determination of ancient human skeletons using DNA
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of special interest. This paper refines the use of sex chromosome specific sequences to determine gender in prehistoric human populations. The experimental protocol is elegant and utilizes specimens of known sex as controls.
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Stone AC, Milner GR, Pääbo S, Stoneking M. Sex determination of ancient human skeletons using DNA. of special interest Am J Phys Anthropol. 99:1996;231-238 This paper refines the use of sex chromosome specific sequences to determine gender in prehistoric human populations. The experimental protocol is elegant and utilizes specimens of known sex as controls.
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(1996)
Am J Phys Anthropol
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Stone, A.C.1
Milner, G.R.2
Pääbo, S.3
Stoneking, M.4
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34
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0029819302
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The genetical archaeology of the human genome
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Von Haeseler A, Sajantila A, Pääbo S. The genetical archaeology of the human genome. Nat Genet. 14:1996;135-140.
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(1996)
Nat Genet
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Von Haeseler, A.1
Sajantila, A.2
Pääbo, S.3
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35
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0031033273
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Lack of founding Amerindian mitochondrial DNA lineages in extinct aborigines from Tierra del Fuego - Patagonia
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Lalueza C, Pérez-Pérez A, Prats E, Cornudella L, Turbón D. Lack of founding Amerindian mitochondrial DNA lineages in extinct aborigines from Tierra del Fuego - Patagonia. Hum Mol Genet. 6:1997;41-46.
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Hum Mol Genet
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Lalueza, C.1
Pérez-Pérez, A.2
Prats, E.3
Cornudella, L.4
Turbón, D.5
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36
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0028972269
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Human β-globin gene polymorphism characterized in DNA extracted from ancient bones 12,000 years old
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Béraud-Colomb E, Roubin R, Martin J, Maroc N, Gardeisen A, Trabuchet G, Goossens M. Human β-globin gene polymorphism characterized in DNA extracted from ancient bones 12,000 years old. Am J Hum Genet. 57:1995;1267-1274.
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Am J Hum Genet
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Béraud-Colomb, E.1
Roubin, R.2
Martin, J.3
Maroc, N.4
Gardeisen, A.5
Trabuchet, G.6
Goossens, M.7
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37
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0000535817
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Reply to Cooper
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Béraud-Colomb E, Roubin R, Martin J, Maroc N, Gardeisen A, Trabuchet G, Goossens M. Reply to Cooper. Am J Hum Genet. 60:1997;1002-1003.
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Am J Hum Genet
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Béraud-Colomb, E.1
Roubin, R.2
Martin, J.3
Maroc, N.4
Gardeisen, A.5
Trabuchet, G.6
Goossens, M.7
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38
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0031583403
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Neandertal genetics
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Cooper A, Poinar HN, Pääbo S, Radovcic J, Debénath A, Caparros M, Barroso-Ruiz C, Bertranpetit J, Nielsen-Marsh C, Hedges REM, Sykes B. Neandertal genetics. Science. 277:1997;1022-1025.
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Science
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Cooper, A.1
Poinar, H.N.2
Pääbo, S.3
Radovcic, J.4
Debénath, A.5
Caparros, M.6
Barroso-Ruiz, C.7
Bertranpetit, J.8
Nielsen-Marsh, C.9
Hedges, R.E.M.10
Sykes, B.11
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39
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15844427403
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Ancient DNA and island endemics
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of special interest. Sub-fossil bones are used to demonstrate the threatened population of ducks on Laysan Island were once widespread throughout the main Hawaiian islands, justifying reintroduction as part of conservation management.
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Cooper A, Rhymer J, James HF, Olson SL, McIntosh Ce, Sorenson MD, Fleischer RC. Ancient DNA and island endemics. of special interest Nature. 381:1996;484 Sub-fossil bones are used to demonstrate the threatened population of ducks on Laysan Island were once widespread throughout the main Hawaiian islands, justifying reintroduction as part of conservation management.
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(1996)
Nature
, vol.381
, pp. 484
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Cooper, A.1
Rhymer, J.2
James, H.F.3
Olson, S.L.4
McIntosh Ce5
Sorenson, M.D.6
Fleischer, R.C.7
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41
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0031452385
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Microsatellite variation and microevolution in the critically endangered San Clemente Island loggerhead shrike (Lanius ludovicianus mearnsi)
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Mundy M, Winchell CS, Burr T, Woodruff DS. Microsatellite variation and microevolution in the critically endangered San Clemente Island loggerhead shrike (Lanius ludovicianus mearnsi). Proc R Soc Lond. 264:1997;869-875.
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Proc R Soc Lond
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Mundy, M.1
Winchell, C.S.2
Burr, T.3
Woodruff, D.S.4
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0031863801
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The ghost of genetic diversity past: Historical DNA analysis of the Greater Prairie chicken
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in press
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Bouzat JL, Lewin HA, Paige KN. The ghost of genetic diversity past: historical DNA analysis of the Greater Prairie chicken. American Naturalist. 1998;. in press.
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American Naturalist
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Bouzat, J.L.1
Lewin, H.A.2
Paige, K.N.3
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43
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0026722642
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Excrement analysis by PCR
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Höss M, Kohn M, Pääbo S, Knauer F, Schröder W. Excrement analysis by PCR. Nature. 359:1992;199.
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(1992)
Nature
, vol.359
, pp. 199
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Höss, M.1
Kohn, M.2
Pääbo, S.3
Knauer, F.4
Schröder, W.5
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44
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0030470781
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Molecular genetic identification of whale and dolphin products from commercial markets in Korea and Japan
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of special interest. An elegant study involving PCR in a hotel room to avoid exportation restrictions, this work shows that whale meat in Korean and Japanese fish markets includes endangered cetaceans such as Baleen whales that have been captured despite international restrictions. The methodology provides an important new approach to enforcing endangered wildlife treaties.
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Baker CS, Cipriano F, Palumbi SR. Molecular genetic identification of whale and dolphin products from commercial markets in Korea and Japan. of special interest Mol Ecol. 5:1996;671-685 An elegant study involving PCR in a hotel room to avoid exportation restrictions, this work shows that whale meat in Korean and Japanese fish markets includes endangered cetaceans such as Baleen whales that have been captured despite international restrictions. The methodology provides an important new approach to enforcing endangered wildlife treaties.
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(1996)
Mol Ecol
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Baker, C.S.1
Cipriano, F.2
Palumbi, S.R.3
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0029984417
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Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake Wetlands
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Parr RL, Carlyle SW, O'Rourke DH. Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake Wetlands. Am J Phys Anthropol. 99:1996;507-518.
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Parr, R.L.1
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O'Rourke, D.H.3
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0344035293
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A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences
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Oota H, Saitou N, Matsushita T, Ueda S. A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences. Hum Mol Genet. 6:1997;41-46.
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Hum Mol Genet
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Oota, H.1
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Ueda, S.4
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47
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0029848079
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Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species
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Bailey JF, Richards MB, Macaulay VA, Colson IB, James IT, Bradley DG, Hedges REM, Sykes BC. Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species. Proc R Soc Lond. 263:1996;1467-1473.
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Proc R Soc Lond
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Bailey, J.F.1
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Bradley, D.G.6
Hedges, R.E.M.7
Sykes, B.C.8
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48
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0028935526
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Rabbit mitochondrial DNA diversity from prehistoric to modern times
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Hardy C, Callou C, Vigne J-D, Casane D, Dennebouy N, Mounolou J-C, Monnerot M. Rabbit mitochondrial DNA diversity from prehistoric to modern times. J Mol Evol. 40:1995;227-237.
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Monnerot, M.7
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Mitochondrial DNA sequence heteroplasmy in the Grand Duke of Russia Georgij Romanov establishes the authenticity of the remains of Tsar Nicholas II
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of special interest. By sequencing a relative, this work confirms that a heteroplasmic sequence previously obtained from the putative remains of the Tsar was, in fact, due to real heteroplasmy rather than contamination. The work demonstrates the resolution possible with ancient DNA sequences.
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Ivanov PL, Wadhams MJ, Roby RK, Holland MM, Weedn VW, Parsons TJ. Mitochondrial DNA sequence heteroplasmy in the Grand Duke of Russia Georgij Romanov establishes the authenticity of the remains of Tsar Nicholas II. of special interest Nat Genet. 12:1996;417-420 By sequencing a relative, this work confirms that a heteroplasmic sequence previously obtained from the putative remains of the Tsar was, in fact, due to real heteroplasmy rather than contamination. The work demonstrates the resolution possible with ancient DNA sequences.
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(1996)
Nat Genet
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Ivanov, P.L.1
Wadhams, M.J.2
Roby, R.K.3
Holland, M.M.4
Weedn, V.W.5
Parsons, T.J.6
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50
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0029893002
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Characteristics of Lyme disease spirochetes in archived European ticks
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Matuschka F-R, Ohlenbusch A, Eiffert H, Richter D, Spielman A. Characteristics of Lyme disease spirochetes in archived European ticks. J Infect Dis. 174:1996;424-426.
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Eiffert, H.3
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51
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PCR-based identification of wheat genomes
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Sallares R, Allaby RG, Brown TA. PCR-based identification of wheat genomes. Mol Ecol. 4:1995;509-514.
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Sallares, R.1
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