Founder events and variation at microsatellite loci in an insular passerine bird, the Laysan finch (Telespiza cantans)

Molecular Ecology

Volumn 7, Issue 6, 1998, Pages 719-731

  Tarr, C L ^a,c,d   Conant, S ^b,d   Fleischer, R C ^c,e  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF HAWAII   (United States)

^c SMITHSONIAN CONSERVATION BIOLOGY INSTITUTE   (United States)

^d PSU ^*

^e NZP

Author keywords

Effective population size; Endangered species; Founder events; Hawaiian honeycreeper; Microsatellites; Primers

Indexed keywords

ALLELE; ASSAY; GENETIC DISTANCE; GENETIC DIVERSITY; GENETIC HETEROGENEITY; HETEROZYGOSITY; MICROSATELLITE LOCUS;

TELESPIZA CANTANS;

EID: 0031927117     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294x.1998.00385.x     Document Type: Article

References (71)

1. Armour JAL, Neumann R, Gobert S, Jeffreys AJ (1994) Isolation of human simple repeat loci by hybridization selection. Human Molecular Genetics, 3, 599-605.
2. Baker AJ, Moeed A (1987) Rapid differentiation and founder effect in colonizing populations of common mynas (Acridotheres tristis). Evolution, 41, 525-538.
3. Ballou J, Rails K (1982) Inbreeding and juvenile mortality in small populations of ungulates: a detailed analysis. Biological Conservation, 24, 239-272.
4. Begon M, Mortimer M (1981) Population Ecology: A Unified Study of Animals and Plants. Sinauer Associates, Inc., Sunderland, MA.
5. Bonnell ML, Selander RK (1974) Elephant seals: genetic variation and near extinction. Science, 184, 908-909.
6. Briscoe DA, Malpica JM, Smith GJ et al. (1992) Rapid loss of genetic variation in large captive populations of Drosophila flies: implications for the genetic management of captive populations. Conservation Biology, 6, 416-425.
7. Callen DF, Thompson AD, Shen Y et al. (1993) Incidence and origin of 'null alleles' in the (AC)n microsatellite markers. American Journal of Human Genetics, 52, 922-927.
8. Candland DK (1969) Discriminability of facial regions used by the domestic chicken in maintaining the social dominance order. Journal of Comparative and Physiological Psychology, 69, 281-285.
9. Caughley G (1994) Directions in conservation biology. Journal of Animal Ecology, 63, 215-244.
10. Chakraborty R, Nei M (1976) Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution, 31, 347-356.
11. Chen X (1993) Comparison of inbreeding and outbreeding in hermaphroditic Arianta arbustorum (L.) (land snail). Heredity, 71, 456-461.
12. Crow JF, Kimura M (1970) An Introduction to Population Genetics Theory. Harper and Row, New York.
13. Ewens WJ (1982) On the concept of effective population size. Theoretical Population Biology, 21, 373-378.
14. Falconer DS (1989) Introduction to Quantitative Genetics, Longman Scientific and Technical, Essex.
15. Fleischer RC, Loew S (1996) Construction and screening of microsatellite-enriched genomic libraries. In: Molecular Zoology: Advances, Strategies, and Protocols (eds Ferraris JD, Palumbi SR), pp. 461-468. Wiley-Liss, New York.
16. Fleischer RC, Conant S, Morin MP (1991) Genetic variation in native and translocated populations of the Laysan finch (Telespiza cantans). Heredity, 66, 125-130.
17. Fleischer RC, Tarr CL, Pratt TK (1994) Genetic structure and mating system in the palila, an endangered Hawaiian honeycreeper, as assessed by DNA fingerprinting. Molecular Ecology, 3, 383-392.
18. Fleischer RC, Fuller G, Ledig DB (1995) Genetic structure of endangered clapper rail (Rallus longirostris) populations in southern California. Conservation Biology, 9, 1234-1243.
19. Frankel OH, Soulé ME (1981) Conservation and Evolution. Cambridge University Press, Cambridge.
20. Frankham R, Hemmer H, Ryder OA et al. (1986) Selection in captive populations. Zoo Biology, 5, 127-138.
21. Franklin IR (1980) Evolutionary change in small populations. In: Conservation Biology: An Evolutionary-Ecological Perspective (eds Soulé ME, Wilcox BA), pp. 135-149. Sinauer Associates, Inc., Sunderland, MA.
22. Gabriel W, Bürger R, Lynch M (1991) Population extinction by mutational load and demographic extinction. In: Species Conservation: A Population Biology Approach (eds Seitz A, Loeschcke V), pp. 49-59. Birkhäuser Verlag, Basel.
23. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995) An evaluation of genetic distances for use with microsatellite loci. Genetics, 139, 463-471.
24. Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
25. Greenwood PJ, Harvey PH, Perrins CM (1978) Inbreeding and dispersal in the great tit. Nature, 271, 52-54.
26. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
27. Hartl DL, Clark AG (1989) Principles of Population Genetics. Sinauer Associates, Inc., Sunderland, Massachusetts.
28. Hebert PCN, Ward RD, Gibson JB (1972) Natural selection for enzyme variants among parthenogenetic Daphnia magna. Genetical Research, 19, 173-176.
29. Hedrick PW, Miller PS (1992) Conservation genetics: techniques and fundamentals. Ecological Applications, 2, 30-46.
30. Houlden BA, England PR, Taylor AC, Greville WD, Sherwin WB (1996) Low genetic variability of the koala Phascolarctos cinereus in south-eastern Australia following a severe population bottleneck. Molecular Ecology, 5, 269-281.
31. James HF, Olson SL (1991) Descriptions of thirty-two new species of birds from the Hawaiian Islands: Part II. Passeriformes. Ornithological Monographs, 46, 1-88.
32. Jiménez JA, Hughes KA, Alaks G, Graham L, Lacy RC (1994) An experimental study of inbreeding depression in a natural habitat. Science, 265, 271-273.
33. Keller LF, Arcese P, Smith JNM, Hochachka WM, Stearns SC (1994) Selection against inbred song sparrows during a natural population bottleneck. Nature, 372, 356-357.
34. Lande R (1988) Genetics and demography in biological conservation. Science, 241, 1455-1460.
35. Leberg PL (1992) Effects of population bottlenecks on genetic diversity as measured by allozyme electrophoresis. Evolution, 46, 477-494.
36. Louis EJ, Dempster ER (1987) An exact test for Hardy-Weinberg and multiple alleles. Biometrics, 43, 805-811.
37. Maruyama T, Fuerst PA (1985) Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck. Genetics, 111, 675-689.
38. Morin MP, Conant S (1994) Variables influencing population estimates of an endangered passerine. Biological Conservation, 67, 73-84.
39. Mundy NI, Woodruff DS (1996) Polymorphic microsatellite markers in the loggerhead shrike Lanius ludovicianus isolated from a library enriched for CA repeats. Molecular Ecology, 5, 811-813.
40. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
41. Nei M, Roychoudhury AK (1974) Sampling variances of heterozygosity and genetic distance. Genetics, 76, 379-390.
42. Nei M, Tajima F (1981) Genetic drift and estimation of effective population size. Genetics, 98, 625-640.
43. Nei M, Maruyama T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
44. Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. Journal of Molecular Evolution, 19, 153-170.
45. Nielsen EE, Hansen MM, Loeschecke V (1997) Analysis of microsatellite DNA from old scale samples of Atlantic salmon Salmo solar: a comparison of genetic composition over 60 years. Molecular Ecology, 6, 487-492.
46. Olson SL (1996) History and ornithological journals of the Tanager expedition of 1923 to the Northwestern Hawaiian Islands, Johnston and Wake Island. Atoll Research Bulletin, no. 433.
47. Ota T (1993) DISPAN: genetic distance and phylogenetic analysis. Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, Pennsylvania.
48. Packer C, Pusey AE, Rowley H et al. (1991) Case study of a population bottleneck: lions of the Ngorongoro crater. Conservation Biology, 5, 219-230.
49. Payne RB, Payne LL, Rowley I (1988) Kin and social relationships in splendid fairy-wrens: recognition by song in a cooperative bird. Animal Behaviour, 36, 1341-1351.
50. Pollak E (1983) A new method for estimating the effective population size from allele frequency changes. Genetics, 104, 531-548.
51. Potts WK, Manning CJ, Wakeland EK (1991) Mating patterns in seminatural populations of mice influenced by MHC genotype. Nature, 352, 619-621.
52. Pusey A, Wolf M (1996) Inbreeding avoidance in animals. Trends in Ecology and Evolution, 11, 201-206.
53. Rails K, Brugger K, Ballou J (1979) Inbreeding and juvenile mortality in small populations of ungulates. Science, 206, 1101-1103.
54. Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution, 49, 1280-1283.
55. Raymond M, Rousset F (1995b) GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
56. Richmond RC, Powell JR (1970) Evidence of heterosis associated with an enzyme locus in a natural population of Drosophila. Proceedings of the National Academy of Sciences, USA, 67, 1264-1267.
57. Robertson A (1965) The interpretation of genotypic ratios in domestic animal populations. Animal Production, 7, 319-324.
58. Ross HA (1983) Genetic differentiation of starling (Sturnus vulgaris: Aves) populations in New Zealand and Great Britain. Journal of the Zoological Society of London, 201, 351-362.
59. Rousset F, Raymond M (1995) Testing heterozygote excess and deficiency. Genetics, 140, 1413-1419.
60. Schaal BA, Levin DA (1976) The demographic genetics of Liatris cylindracea Michx. (Compositae). American Naturalist, 110, 191-206.
61. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
62. Sokal RR, Rohlf FJ (1981) Biometry. W. H. Freeman and Company, New York.
63. Swofford DL, Selander RB (1981) BIOSYS-1 : a FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics. Journal of Heredity, 72, 281-283.
64. Templeton AR, Read B (1994) Inbreeding: one word, several meanings, much confusion. In: Conservation Genetics (eds Loeschcke V, Tomiuk J, Jain SK), pp. 91-105. Birkhäuser Verlag, Boston.
65. Waples RS (1989) A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics, 121, 379-391.
66. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
67. Westneat DF, Noon WA, Reeve HK, Aquadro CF (1988) Improved hybridization conditions for DNA 'fingerprints' probed with M13. Nucleic Acids Research, 16, 4161.
68. Wingfield JC, Farner DS (1976) Avian endocrinology - field investigations and methods. Condor, 78, 570-573.
69. Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
70. Wright S (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
71. Wright S (1969) The Theory of Gene Frequencies. The University of Chicago Press, Chicago.