Modelling quantitative structure-activity relationships between animal behaviour and environmental signal molecules

Journal of Experimental Biology

Volumn 201, Issue 2, 1998, Pages 245-258

  Browne, Kenneth A ^a   Tamburri, Mario N ^b   Zimmer Faust, Richard K ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

Author keywords

Anaphylatoxin; C terminus; Chemical cue; Crassostrea virginica; Oyster; Partial least squares (PLS); Peptide; Quantitative structure activity relationship (QSAR); Settlement

Indexed keywords

OLIGOPEPTIDE;

ANIMAL; ANIMAL BEHAVIOR; ARTICLE; ASSOCIATION; BIOLOGICAL MODEL; BRACHYURA; DRUG EFFECT; ECOSYSTEM; LARVA; OYSTER; PHYSIOLOGY; SIGNAL TRANSDUCTION; STRUCTURE ACTIVITY RELATION; THORACICA;

ANIMALS; BEHAVIOR, ANIMAL; BRACHYURA; CUES; ECOSYSTEM; LARVA; MODELS, BIOLOGICAL; OLIGOPEPTIDES; OSTREIDAE; SIGNAL TRANSDUCTION; STRUCTURE-ACTIVITY RELATIONSHIP; THORACICA;

ANIMALIA; BRACHYURA; CRASSOSTREA VIRGINICA; DECAPODA (CRUSTACEA); MAMMALIA; OSTREIDAE; SCYLLA SERRATA; THORACICA;

EID: 0031911529     PISSN: 00220949     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (63)

1. BAULIEU, E.-E. AND KELLY, P. A. (1990). (eds). Hormones: From Molecules to Disease. New York: Chapman & Hall.
2. BOKISCH, V. A. AND MÜLLER-EBERHARD, H. J. (1970). Anaphylatoxin inactivator of human plasma: Its isolation and characterization as a carboxypeptidase. J. clin. Invest. 49, 2427-2436.
3. BOKISCH, V. A., MÜLLER-EBERHARD, H. J. AND COCHRANE, C. G. (1969). Isolation of a fragment (C3a) of the third component of human complement containing anaphylatoxin and chemotactic activity and description of an anaphylatoxin inactivator of human serum. J. exp. Med. 129, 1109-1130.
4. BOULAY F., MERY, L., TARDIF, M., BROUCHON, L. AND VIGNAIS, P. (1991). Expression cloning of a receptor for C5a anaphylatoxin on differentiated HL-60 cells. Biochemistry 30, 2993-2999.
5. CAPORALE, L. H., TIPPETT, P. S., ERICKSON, B. W. AND HUGLI, T. E. (1980). The active site of C3a anaphylatoxin. J. biol. Chem. 255, 10758-10763.
6. CARR, W. E. S. AND THOMPSON, H. W. (1983). Adenosine 5′-monophosphate, an internal regulatory agent, is a potent chemoattractant for a marine shrimp. J. Comp. Physiol. A Sens. Neural Behav. Physiol. 153, 47-53.
7. CODE, C. F. (1982). Histamine receptors and gastric secretion. In Pharmacology of Histamine Receptors (ed. C. R. Ganellin and M. E. Parsons), pp. 217-235. Boston: Wright.
8. COLLANTES, E. R. AND DUNN III, W. J. (1995). Amino acid side chain descriptors for quantitative structure-activity relationship studies of peptide analogues. J. med. Chem. 38, 2705-2713.
9. COON, S. L., FITT, W. K. AND BONAR, D. B. (1990). Competency and delay of metamorphosis in the Pacific oyster. Crassostrea gigas (Thunberg). Mar. Biol. 106, 379-387.
10. CRISP, D. J. (1990). Gregariousness and systematic affinity in some North Carolinian barnacles. Bull. mar. Sci. 47, 516-525.
11. CRISP, D. J. AND MEADOWS, P. S. (1962). The chemical basis of gregariousness in cirripedes. Proc. R. Soc. Lond. B 156, 500-520.
12. DESNUELLE, P. (1960). Trypsin. In The Enzymes, 2nd edn, vol. 4 (ed. P. D. Boyer, H. Lardy and K. Myrbäck), pp. 119-132. New York: Academic Press.
13. DUNN III, W. J., WOLD, S., EDLUND, U., HELLBERG, S. AND GASTEIGER, J. (1984). Multivariate structure-activity relationships between data from a battery of biological tests and an ensemble of structure descriptors: The PLS method. Quant. Struct.-Act. Relat. 3, 131-137.
14. EMBER, J. A., JOHANSEN, N. L. AND HUGLI, T. E. (1991). Designing synthetic superagonists of C3a anaphylatoxin. Biochemistry 30, 3603-3612.
15. EMBER, J. A., SANDERSON, S. D., TAYLOR, S. M., KAWAHARA, M. AND HUGLI, T. E. (1992). Biologic activity of synthetic analogs of C5a anaphylatoxin. J. Immunol. 148, 3165-3173.
16. FORWARD, R. B. AND LOHMANN, K. J. (1983). Control of egg hatching in the crab Rhithropanopeus harrisii (Gould). Biol. Bull. mar. biol. Lab., Woods Hole 165, 154-166.
17. FORWARD, R. B., RITTSCHOF, D. AND DE VRIES, M. C. (1987). Peptide pheromones synchronize crustacean egg hatching and larval release. Chem. Senses 12, 491-498.
18. FUKUOKA, Y. AND HUGLI, T. E. (1988). Demonstration of a specific C3a receptor on guinea pig platelets. J. Immunol. 140, 3496-3501.
19. GALTSOFF, P. S. (1964). The American oyster. Crassostrea virginica Gmelin. Fishery Bull. Fish. Wildl. Serv. U.S. 64, 1-480.
20. GELADI, P. AND KOWALSKI, B. R. (1986). Partial least-squares regression: A tutorial. Analyt. chim. Acta 185, 1-17.
21. GERARD, C. AND HUGLI, T. E. (1980). Amino acid sequence of the anaphylatoxin from the fifth component of porcine complement. J. biol. Chem. 255, 4710-4715.
22. GERARD, N. P. AND GERARD, C. (1991). The chemotactic receptor for human C5a anaphylatoxin. Nature 349, 614-617.
23. GERARDY-SCHAHN, R., AMBROSIUS, D., CASARETTO, M., GRÖTZINGER, J., SAUNDERS, D., WOLLMER, A., BRANDENBURG, D. AND BITTER-SUERMANN, D. (1988). Design and biological activity of a new generation of synthetic C3a analogues by combination of peptidic and non-peptidic elements. Biochem. J. 255, 209-216.
24. GLEN, W. G., DUNN III, W. J. AND SCOTT, D. R. (1989). Principal components analysis and partial least squares regression. Tetrahedron Comput. Methodol. 2, 349-376.
25. HALDANE, J. B. S. (1955). Animal communication and the origin of the human language. Scient. Prog. 43, 385-401.
26. HELLBERG, S., SJÖSTRÖM, M., SKAGERBERG, B. AND WOLD, S. (1987). Peptide quantitative structure-activity relationships, a multivariate approach. J. ined. Chem. 30, 1126-1135.
27. HOWE, N. R. AND SHEIKH, Y. M. (1975). Anthopleurine: A sea anemone alarm pheromone. Science 189, 386-388.
28. HUGHES, J. (1978). Opioid peptides. In Neuronal Information Transfer (ed. A. Karlin, V. M. Tennyson and H. J. Vogel), pp. 283-293. New York: Academic Press.
29. HUGLI, T. E. (1981). The structural basis for anaphylatoxin and chemotactic functions of C3a, C4a, and C5a. CRC Crir. Rev. Immunol. 1, 321-366.
30. HUGLI, T. E. AND ERICKSON, B. W. (1977). Synthetic peptides with the biological activities and specificity of human C3a anaphylatoxin. Proc. natn. Acad. Sci. U.S.A. 74, 1826-1830.
31. JESAITIS, A. J., NAEMLRA, J. R., PAINTER, R. G., SKLAR, L. A. AND COCHRANE, C. G. (1983). The fate of an N-formylated chemolactic peptide in stimulated human granulocytes. J. biol. Chem. 258, 1968-1977.
32. KAWAI, M., QUINCY, D. A., LANE, B., MOLLISON, K. W., OR, Y.-S., LULY, J. R. AND CARTER, G. W. (1992). Structure-function studies in a series of carboxyl-terminal octapeptide analogues of anaphylatoxin C5a. J. iued. Chem. 35, 220-223.
33. KÖNIG, W. (1993). Peptide and Protein Hormones: Structure, Regulation, Activity; A Reference Manual. New York: VCH.
34. LARMAN, V. N. (1984). Protein extracts from some marine animals which promote barnacle settlement: Possible relationship between a protein component of arthropod cuticle and actin. Comp. Biochem. Physiol. 77B, 73-81.
35. LARMAN, V. N. AND GABBOTT, P. A. (1975). Settlement of cyprid larvae of Balanus balanoides and Elminius modestus Darwin. J. mar. Biol. Ass. U.K. 55, 183-190.
36. LARMAN, V. N., GABBOTT, P. A. AND EAST, J. (1982). Physicochemical properties of the settlement factor proteins from the barnacle Balanus halanoides. Comp. Biochem. Physiol. 72B, 329-338.
37. LEHNINGER, A. L., NELSON, D. L. AND COX, M. M. (1993). Principles of Biochemistry. 2nd edn. New York: Worth Publishers.
38. LORBER, A. AND KOWALSKI, B. R. (1988). A Cross-Validatory Approach to Error Estimation in the Multiple Linear Regression Model. Center for Process Analytical Chemistry: Publication Announcement no. 55.
39. LORBER, A., VELTKAMP, D. J. AND KOWALSKI, B. R. (1988). Outliers Ancdysis in Multivariate Calibration. Center for Process Analytical Chemistry: Publication Announcement no. 57.
40. LORBER, A., WANGEN, L. E. AND KOWALSKI, B. R. (1987). A theoretical foundation for the PLS algorithm. J. Cheinometrics 1, 19-31.
41. MOON, K. E., GORSKI, J. P. AND HUGLI, T. E. (1981). Complete primary structure of human C4a anaphylatoxin. J. biol. Chem. 256, 8685-8692.
42. PAWLIK, J. R. (1992). Chemical ecology of the settlement of benthic marine invertebrates. Oceanogr. mar. Biol. A. Rev. 30, 273-335.
43. PETTIS, R. J., ERICKSON, B. W., FORWARD, R. B. AND RITTSCHOF, D. (1993). Superpotent synthetic tripeptide mimics of the mud-crab pumping pheromone. Int. J. Peptide Protein Res. 42, 312-319.
44. RAIMONDI, P. T. (1988). Settlement cues and determination of the vertical limit of an intertidal barnacle. Ecology 69, 400-407.
45. RITTSCHOF, D. (1985). Oyster drills and the frontiers of chemical ecology: Unsettling ideas. Am. Malacol. Bull. Special Ed. 1, 111-116.
46. RITTSCHOF, D. (1990). Peptide-mediated behaviours in marine organisms: Evidence for a common theme. J. chem. Ecol. 16, 261-272.
47. RITTSCHOF, D. (1993). Body odors and neutral-basic peptide mimics: A review of responses by marine organisms. Am. Zool. 33, 487-493.
48. RITTSCHOF, D., FORWARD, R. B., JR AND MOTT, D. D. (1985). Larval release in the crab Rhithropanopeus harrisii (Gould): Chemical cues from hatching eggs. Chem. Senses 10, 567-577.
49. RITTSCHOF, D., FORWARD, R. B., JR. SIMONS, D. A., REDDY, P. A. AND ERICKSON, B. W. (1989). Peptide analogs of the mud crab pumping pheromone: Structure-function studies. Chem. Senses 14, 137-148.
50. SANDERSON, S. D., KIRNARSKY, L., SHERMAN, S. A., EMBER, J. A., FINCH, A. M. AND TAYLOR, S. M. (1994). Decapeptide agonists of human C5a: The relationship between conformation and spasmogenic and platelet aggregatory activities. J. med. Chem. 37, 3171-3180.
51. SANDERSON, S. D., KIRNARSKY, L., SHERMAN, S. A., VOGEN, S. M., PRAKASH, O., EMBER, J. A., FINCH, J. A. ANDTAYLOR, S. M. (1995). Decapeptide agonists of human C5a: The relationship between conformation and neutrophil response. J. med. Chem. 38, 3669-3675.
52. STEPHENSON, R. P. (1956). A modification of receptor theory. Br. J. Pharmac. 11, 379-393.
53. TALLARIDA, R. J. AND JACOB, L. S. (1979). The Dose-Response Relation in Pharmacology. New York: Springer-Verlag.
54. TAMBURRI, M. N., ZIMMER-FAUST, R. K. AND TAMPLIN, M. L. (1992). Natural sources and properties of chemical inducers mediating settlement of oyster larvae: A re-examination. Biol. Bull. mar. biol. Lab., Woods Hole 183, 327-338.
55. THGTMEYER, K. AND RITTSCHOF, D. (1989). Synthetic peptide analogs to barnacle settlement pheromone. Peptides 9, 1403-1406.
56. TOPLISS, J. G. AND EDWARDS, R. P. (1979). Chance factors in studies of quantitative structure-activity relationships. J. med. Chem. 22, 1238-1244.
57. TURNER, E. J., ZIMMER-FAUST, R. K., PALMER, M. A., LUCKENBACH, M. AND PENTCHEFF, N. D. (1994). Settlement of oyster (Crassostrea virginica) larvae: Effects of water flow and a water-soluble chemical cue. Limnol. Oceanogr. 39, 1579-1593.
58. UNSON, C. G., ERICKSON, B. W. AND HUGLI, T. E. (1984). Active site of C3a anaphylatoxin: Contributions of the lipophilic and orienting residues. Biochemistry 23, 585-589.
59. WOLD, H. (1982). Soft modeling: The basic design and some extentions. In Systems Under Indirect Observation: Causality, Structure, Prediction, vol. 2 (ed. K. G. Jöreskog and H. Wold), pp. 1-54. New York: North Holland.
60. WOLD, S. AND DUNN III, W. J. (1983). Multivariate quantitative structure-activity relationships (QSAR): Conditions for their applicability. J. Chem. Inf. Comput. Sci. 23, 6-13.
61. YOKOSAWA, H. AND ISHII, S. (1977). Anhydrotrypsin: New features in ligand interactions revealed by affinity chromatography and thionine replacement. J. Biochem. 81, 647-656.
62. ZIMMER-FAUST, R. K. AND TAMBURRI, M. N. (1994). Chemical identity and ecological implications of a waterborne, larval settlement cue. Limnol. Oceanogr. 39, 1075-1087.
63. ZIMMER-FAUST, R. K., TAMBURRI, M. N. AND DECHO, A. W. (1997). Chemosensory ecology of oyster larvae: Benthic-pelagic coupling. In Zooplankton: Sensory Ecology and Physiology (ed. D. K. Hartline, P. Lenz, J. E. Purcell and D. L. MacMillan), pp. 37-50. New York: Gordon and Breach.