Evolution of multigene families by gene duplication: A haploid model

Genetics

Volumn 149, Issue 4, 1998, Pages 2147-2158

  Tachida, Hidenori ^a   Kuboyama, Tohru ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CROSSING OVER; EVOLUTION; GENE DELETION; GENE DUPLICATION; GENE NUMBER; GENETIC MODEL; GENETIC SELECTION; HAPLOIDY; HUMAN; MULTIGENE FAMILY; MUTATION RATE; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; PROBABILITY; PSEUDOGENE;

ALLELES; COMPUTER SIMULATION; EVOLUTION; GENE DELETION; HAPLOIDY; MARKOV CHAINS; MODELS, GENETIC; MULTIGENE FAMILY; MUTATION; PSEUDOGENES; SELECTION (GENETICS);

EID: 0031904007     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (37)

1. BROWN, C. J., C. F. AQUADRO and W. W. ANDERSON, 1990 DNA sequence evolution of the amylase multigene family in Drosophila pseudoobscura. Genetics 126: 131-138.
2. BUCKLER, E. S., IV, A. IPPOLITO and T. P. HOLTSFORD, 1997 The evolution ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
3. CARROLL, S. B., 1995 Homeotic genes and the evolution of arthropods and chordates. Nature 376: 479-485.
4. CLARK, A. G., 1994 Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA 91: 2950-02954.
5. CLEGG, M. T., M. P. CUMMINGS and M. L. DURMBIN, 1997 The evolution of plant nuclear genes. Proc. Natl. Acad. Sci. USA 94: 7791-7798.
6. COX, D. R., and H. D. MILLER, 1965 The Theory of Stochastic Processes. Chapman and Hall, London.
7. CROW, J. F., and M. KIMURA, 1970 An Introduction to Population Genetic Theory. Harper & Row, New York.
8. DA LAGE, J. L., M. L. LEMEUNIER, M. L. CARIOU and J. R. DAVID, 1992 Multiple amylase genes in Drosophila ananassae and related species. Genet. Res. 59: 85-92.
9. EGGLESTON, W. B., M. ALLEMAN and J. L. KERMICLE, 1995 Molecular organization and germinal instability of R-stippled maize. Genetics 141: 347-360.
10. FRYXELL, K. J., 1996 The coevolution of gene family trees. Trends Genet. 12: 364-369.
11. GILLESPIE, J. H., 1983 Some properties of finite populations experiencing strong selection and weak mutation. Am. Nat 121: 691-708.
12. HOLLICK, J. B., J. E. DORWEILER and V. L. CHANDLER, 1997 Paramutation and related allelic interactions. Trends Genet. 13: 302-308.
13. IWABE, N., K. KUMA and T. MIYATA, 1996 Evolution of gene families and relationship with organismal evolution: rapid divergence of tissue-specific genes in the early evolution of chordates. Mol. Biol. Evol. 13: 483-493.
14. KIMURA, K., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
15. KIMURA, M., and J. F. CROW, 1964 The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
16. LANGE, B. W., C. H. LANGLEY and W. STEPHAN, 1990 Molecular evolution of Drosophila metallothionein genes. Genetics 126: 921-932.
17. LI, W. H., 1987 Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J. Mol. Evol. 24: 337-345.
18. LYCKEGAARD, E. M. S., and A. G. CLARK, 1989 Ribosomal DNA and stellate gene copy number variation on the Y chromosome of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 86: 1944-1984.
19. MUKAI, T., and C. C. COCKERHAM, 1977 Spontaneous mutation rates at enzyme loci in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 74: 2514-2517.
20. NEITZ, M., and J. NEITZ, 1995 Numbers and ratios of visual pigment genes for normal red-green color vision. Science 267: 1013-1016.
21. OHNO, S., 1970 Evolution by Gene Duplication. Springer-Verlag, New York.
22. OHTA, T., 1983 Theoretical study on the accumulation of selfish DNA. Genet. Res. 41: 1-15.
23. OHTA, T., 1987a A model of evolution for accumulating genetic information. J. Theor. Biol. 124: 199-211.
24. OHTA, T., 1987b Simulating evolution by gene duplication. Genetics 115: 207-213.
25. OHTA, T., 1988a Further simulation studies on evolution by gene duplication. Evolution 42: 375-386.
26. OHTA, T., 1988b Multigene and supergene families. Oxf. Surv. Evol. Biol. 5: 41-65.
27. OHTA, T., 1991 Multigene families and the evolution of complexity. J. Mol. Evol. 33: 34-41.
28. PAYANT, V., S. ABUKASHAWA, M. SASSEVILLE, B. F. BENKEL, D. A. HICKEY et al., 1988 Evolutionary conservation of the chromosomal configuration and regulation of amylase genes among eight species of the Drosophila melanogaster species subgroup. Mol. Biol. Evol. 5: 560-567.
29. PETROV, D. A., E. R. LOZOVSKAYA and D. L. HARTL, 1996 High intrinsic rate of DNA loss in Drosophila. Nature 384: 346-349.
30. SHAPIRA, S. K., and V. G. FINNERTY, 1986 The use of genetic complementation in the study of eukaryotic macromolecular evolution: rate of spontaneous gene duplication at two loci of Drosophila melanogaster. J. Mol. Evol. 23: 159-167.
31. SHIBATA, H., and T. YAMAZAKI, 1995 Molecular evolution of the duplicated Amy locus in Drosophila melanogaster species subgroup: concerted evolution only in coding region and excess of non-synonymous substitutions in speciation. Genetics 141: 223-236.
32. STEPHAN, W., 1986 Recombination and the evolution of satellite DNA. Genet. Res. 47: 167-174.
33. SUDUPAK, M. A., J. L. BENNETZEN and S. H. HULLBERT, 1993 Unequal exchange and meiotic instability of disease-resistance genes in the Rp 1 region of maize. Genetics 133: 119-125.
34. TAKANO, T. S., S. KUSAKABE, A. KOGA and T. MUKAI, 1989 Polymorphism for the number of tandemly multiplicated glycerol-3-phosphate dehydrogenase genes in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 86: 5000-5004.
35. THEISSEN, G., J. T. KIM and H. SAEDLER, 1996 Classification and phytogeny of the MADS-box multigene family suggest defined roles of MADS-box gene subfamilies in the morphological evolution of eukaryotes. J. Mol. Evol. 43: 484-516.
36. WALSH, J. B., 1985 Interaction of selection and biased gene conversion in a multigene family. Proc. Natl. Acad. Sci. USA 82: 153-157.
37. WALSH, J. B., 1995 How often do duplicated genes evolve new functions? Genetics 139: 421-428.