Structure of CARB-4 and AER-1 carbenicillin hydrolyzing β-lactamases

Antimicrobial Agents and Chemotherapy

Volumn 42, Issue 8, 1998, Pages 1966-1972

  Sanschagrin, François ^a   Bejaoui, Noureddine ^a   Levesque, Roger C ^a  

^a UNIVERSITÉ LAVAL   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BETA LACTAMASE; CARBENICILLIN; PROTEIN AER 1; PROTEIN CARB 4; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; DNA FLANKING REGION; ENZYME ACTIVE SITE; ENZYME STRUCTURE; GENE CASSETTE; HYDROLYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ACTIVITY RELATION;

EID: 0031903175     PISSN: 00664804     EISSN: None     Source Type: Journal    
DOI: 10.1128/aac.42.8.1966     Document Type: Article

References (47)

1. Ambler, R. P., A. F. W. Coulson, J.-M. Frère, J.-M. Ghuysen, B. Joris, M. Forsman, R. C. Levesque, G. Tiraby, and S. G. Waley. 1991. A standard numbering scheme for the class A β-lactamases. Biochem. J. 276:269-272.
2. Atkinson, T. A., and M. Smith. 1984. In M. J. Gait (ed.), Oligonucleotide synthesis: a practical approach, p. 35-81. IRL Press, Washington, D.C.
3. Bjellqvist, B., G. J. Hughes, C. Pasquali, N. Paquet, F. Ravier, J.-C. Sanchez, S. Frutiger, and D. F. Hochstrasser. 1993. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14:1023-1031.
4. Boissinot, M., and R. C. Levesque. 1990. Nucleotide sequence of the PSE-4 carbenicillinase gene and correlations with Staphylococcus aureus PC1 β-lactamase crystal structure. J. Biol. Chem. 265:1225-1230.
5. Boyer, H. W., and D. Roulland-Dussoix. 1969. A complementation analysis of the restriction and modification of DNA in Escherichia coli. J. Mol. Biol. 41:459-472.
6. Brendel, V., and E. N. Trifonov. 1984. A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res. 12:4411-4427.
7. Bush, K., G. A. Jacoby, and A. A. Medeiros. 1995. A functional classification scheme for β-lactamases and its correlation with molecular structure. Antimicrob. Agents Chemother. 39:1211-1233.
8. Campbell, J. I. A., S. Scahill, T. Gibson, and R. P. Ambler. 1989. The phototrophic bacterium Rhodopseudomonas capsulata sp108 encodes an indigenous class A beta-lactamase. Biochem J. 260:803-812.
9. Chang, A. C. Y., and S. N. Cohen. 1978. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J. Bacteriol. 134:1141-1156.
10. Couture, F., J. Lachapelle, and R. C. Levesque. 1992. Phytogeny of LCR-1 and OXA-5 with class A and class D β-lactamases. Mol. Microbiol. 6:1693-1705.
11. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
12. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package), version 3.57c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
13. Furth, A. J. 1975. Purification and properties of a constitutive β-lactamase from Pseudomonas aeruginosa strain Dalgleish. Biochem. Biophys. Acta 377: 431-433.
14. Guerry, B., D. J. LeBlanc, and S. Falkow. 1973. General method for the isolation of plasmid deoxyribonucleic acid. J. Bacteriol. 116:1064-1066.
15. Hall, R. M., G. D. Recchia, C. M. Collis, H. J. Brown, and H. W. Stokes. 1996. Gene cassettes and integrons: moving antibiotic resistance genes in gram-negative bacteria, p. 19-34. In C. F. Amabile-Cuevas (ed.), Antibiotic resistance: from molecular basics to therapeutic options. R. G. Landes Company, Austin, Tex.
16. Hedges, R. W., A. A. Medeiros, M. Cohenford, and G. A. Jacoby. 1985. Genetic and biochemical properties of AER-1, a novel carbenicillin-hydrolyzing β-lactamase from Aeromonas hydrophila. Antimicrob. Agents Chemother. 27:479-484.
17. Huovinen, P., and G. A. Jacoby. 1991. Sequence of the PSE-1 β-lactamase gene. Antimicrob. Agents Chemother. 35:2428-2430.
18. Huovinen, P., S. Huovinen, and G. A. Jacoby. 1988. Sequence of PSE-2 β-lactamase. Antimicrob. Agents Chemother. 32:134-136.
19. Joris, B., J.-M. Ghuysen, G. Dive, A. Renard, O. Dideberg, P. Charlier, J.-M. Frère, J. A. Kelly, J. C. Boyington, P. C. Moews, and J. R. Knox. 1988. The active site-serine penicillin-recognizing enzymes as member of the Streptomyces R61 DD-peptidase family. Biochem. J. 250:313-324.
20. Joris, B., P. Ledent, O. Dideberg, E. Fonze, E. Lamotte-Brasseur, J. Kelly, J.-M. Ghuysen, and J. M. Frère. 1991. Comparison of the sequences of class A β-lactamases and of the secondary structure elements of penicillin-recognizing proteins. Antimicrob. Agents Chemother. 35:2294-2301.
21. Kahn, M., R. Kolter, C. Thomas, D. Figurski, R. Meyer, E. Remaut, and D. R. Helinski. 1979. Plasmid cloning vehicles derived from plasmids ColE1, F, R6K and RK2. Methods Enzymol. 68:268-280.
22. Labia, R., M. Guionie, and M. Barthélémy. 1981. Properties of three carbenicillin-hydrolysing β-lactamases (CARB) from Pseudomonas aeruginosa: identification of a new enzyme. J. Antimicrob. Chemother. 7:49-56.
23. CARB-3 encoding the carbenicillinase-3 β-lactamase of Pseudomonas aeruginosa. Gene 102:7-12.
24. Levesque, R. C., and G. A. Jacoby. 1988. Molecular structure and interrelationships of multiresistance β-lactamase transposons. Plasmid 19:21-29.
25. Levesque, R. C., A. A. Medeiros, and G. A. Jacoby. 1987. Molecular cloning and DNA homology of plasmid-mediated β-lactamase genes. Mol. Gen. Genet. 206:252-258.
26. Livermore, D. M., and C. S. Jones. 1986. Characterization of NPS-1, a novel plasmid-mediated β-lactamase from two Pseudomonas aeruginosa isolates. Antimicrob. Agents Chemother. 29:99-103.
27. Livermore, D. M., J. P. Maskell, and D. J. Williams. 1984. Detection of PSE-2 β-lactamase in enterobacteria. Antimicrob. Agents Chemother. 25:268-272.
28. Mercier, J., J. Lachapelle, F. Couture, M. Lafond, G. Vezina, M. Boissinot, and R. C. Levesque. 1990. Structural and functional characterization of tnpI, a recombinase locus in Tn21 and related β-lactamase transposons. J. Bacteriol. 172:3745-3757.
29. Messing, J. 1983. New M13 vectors for cloning. Methods Enzymol. 101:20-78.
30. Messing, J., J. Vieira, and C. C. Vanish-Perron. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-109.
31. Nakai, K., and M. Kanehisa. 1991. Expert system for predicting protein localization sites in gram-negative bacteria. Proteins Struct. Funct. Genet. 11:95-110.
32. Newsom, S. W. B. 1969. Carbenicillin-resistant Pseudomonas. Lancet ii:1141.
33. Nielsen, H., J. Engelbrecht, S. Brunak, and G. V. Heijne. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1-6.
34. Oliver, D. 1985. Protein secretion in Escherichia coli. Rev. Microbiol. 39:615-648.
35. Paul, G., M. L. Joly-Guillou, E. Bergogne-Berezin, P. Nivot, and A. Philippon. 1989. Novel carbenicillin-hydrolyzing β-lactamase (CARB-5) from Acinetobacter calcoaceticus var. anitratus. FEMS Microbiol. Lett. 59:45-50.
36. Philippon, A. M., G. C. Pamp, A. P. Thabaut, and G. A. Jacoby. 1986. Properties of a novel carbenicillin-hydrolyzing enzyme (CARB-4) specified by IncP2 plasmid from Pseudomonas aeruginosa. Antimicrob. Agents Chemother. 29:519-520.
37. Rose, R. E. 1988. The nucleotide sequence of pACYC184. Nucleic Acids Res. 16:355.
38. Sakurai, Y., K. Tsukamoto, and T. Sawai. 1991. Nucleotide sequence and characterization of a carbenicillin-hydrolyzing penicillinase gene from Proteus mirabilis. J. Bacteriol. 173:7038-7041.
39. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
40. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
41. Scholz, P., V. Haring, B. Wittmann-Liebold, K. Ashman, M. Bagdasarian, and E. Scherzinger. 1989. Complete nucleotide sequence and gene organization of the broad-host range plasmid RSF1010. Gene 75:271-288.
42. Segatore, B., O. Massida, G. Satta, D. Setacci, and G. Amicosante. 1993. High specificity of cphA-encoded metallo-β-lactamase from Aeromonas hydrophila AEO36 for carbapenems and its contribution to β-lactam resistance. Antimicrob. Agents Chemother. 37:1324-1328.
43. Silhavy, T. J., M. L. Berman, and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
44. Spratt, B. G., P. J. Hedge, S. te Heesch, A. Edelman, and J. K. Broome-Smith. 1986. Kanamycin-resistant vectors that are analogues of plasmids pUC8, pUC9, pEMBLS and pEMBL9. Gene 41:337-341.
45. Sutcliffe, J. G. 1978. Nucleotide sequence of the ampicillin resistance gene of Escherichia coli plasmid pBR322. Proc. Natl. Acad. Sci. USA 75:3737-3741.
46. Sykes, R. B., and M. Matthew. 1976. The β-lactamase of gram-negative bacteria and their role in resistance to β-lactam antibiotics. J. Antimicrob. Chemother. 2:115-157.
47. Takahashi, I., K. Tsukamoto, M. Harada, and T. Sawai. 1983. Carbenicillin-hydrolysing penicillinase of Proteus mirabilis and the PSE-type penicillinases of Pseudomonas aeruginosa. Microbiol. Immunol. 27:995-1004.