Structurally altered substrates for DNA topoisomerase I. Effects of inclusion of a single 3'-deoxynucleotide within the scissile strand

Nucleosides and Nucleotides

Volumn 17, Issue 1-3, 1998, Pages 515-530

  Arslan, Tuncer ^a   Abraham, Anil T ^a   Hecht, Sidney M ^a  

^a UNIVERSITY OF VIRGINIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; DOUBLE STRANDED DNA;

ARTICLE; DNA DETERMINATION; DNA MODIFICATION; DNA STRUCTURE; ENZYME ACTIVITY; ENZYME SUBSTRATE; STRUCTURE ANALYSIS;

EID: 0031889559     PISSN: 07328311     EISSN: None     Source Type: Journal    
DOI: 10.1080/07328319808005195     Document Type: Article

References (55)

1. Chen, A. Y.; Liu, L. F. Annu. Rev. Pharmacol. Toxicol., 1994, 34, 191-218.
2. Gupta, M.; Fujimori, A.; Pommier, Y. Biochim. Biophys. Acta, 1995, 1262, 114.
3. Wang, J. C. Harvey Lectures, 1987, 81, 93-110.
4. Osheroff, N. Pharmacol. Ther., 1989, 41, 223-241.
5. Champoux, J. J.; Bullock, P. A. In Genetic Recombination; Kucherlapati, R.; Smith, G. R., Eds.; American Chemical Society for Microbiology, Washington, DC, 1988, pp 655-666.
6. Ikeda, H. In DNA Topology and its Biological Effects; Cozzarelli, N. R.; Wang, J. C., Eds.; Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1990, pp 341-359.
7. Zhu, J.; Schiestl, R. H. Mol. Cell. Biol., 1966, 16, 1805-1812.
8. Liu, L. F. DNA Annu. Rev. Biochem., 1989, 55, 351-375.
9. Hecht, S. M.; Berry, D. E.; MacKenzie, L. J.; Busby, R. W.; Nasuti, C. A. J. Nat. Prod., 1991, 55, 401-413.
10. Kingsbury, W. D.; Boehm, J. C.; Jakas, D. R.; Holden, K. G.; Hecht, S. M.; Gallagher, G.; Caranfa, M. J.; McCabe, F. L.; Faucette, L. F.; Johnson, R. K.; Hertzberg, R. P. J. Med. Chem., 1991, 34, 98-107.
11. Wang, L.-K.; Johnson, R. K.; Hecht, S.M. Chem. Res. Toxicol., 1993, 6, 813-818.
12. Leteurtre, F.; Fujimori, A.; Tanizaw, A.; Chhabra, A.; Mazumder, A.; Kohlhagen, G.; Nakano, H.; Pommier, Y. J. Biol. Chem., 1994, 269, 28702-28707.
13. Cozzarelli, N. R.; Wang, J. C. (Eds.) In DNA Topology and its Biological Effects, Cold Harbor Spring Press, 1978, pp 396 ff.
14. Champoux, J. J. J. Biol. Chem., 1981, 256, 4805-4809.
15. Champoux, J. J. Proc. Natl. Acad. Sci. U.S.A., 1976, 73, 3488-3491.
16. Hsiang, Y.-H.; Hertzberg, R.; Hecht, S. M.; Liu, L. F. J. Biol. Chem., 1985, 260, 14873-14878.
17. Hertzberg, R. P.; Caranfa, M. J.; Hecht, S. M. Biochemistry, 1989, 28, 4629-4638.
18. Kingma, P. S.; Corbett, A. H.; Burcham, P. C.; Marnett, L. J.; Osheroff, N. J. Biol. Chem., 1995, 270, 21441-21444.
19. Henningfeld, K. A.; Arslan, T.; Hecht, S. M. J. Am. Chem. Soc., 1996, 118, 11701-11714.
20. Been, M. D.; Champoux, J. J. Nucleic Acids Res., 1984, 12, 3097-3114.
21. Halligan, B. D.; Davis, J. L.; Edwards, K. A.; Liu, L. F. J. Biol. Chem., 1982, 257, 3995-4000.
22. McCoubrey, W.K.; Champoux, J. J. J. Biol. Chem., 1986, 261, 5130-5137.
23. Svejstrup, J. Q.; Christiansen, K.; Gromova, I. I.; Anderson, A. H.; Westergaard, O. J. Mol. Biol., 1991, 222, 669-678.
24. Christiansen, K.; Svejstrup, A. B. D.; Andersen, A. H.; Westergaard O. J. Biol. Chem., 1993, 268, 9690-9701.
25. Shuman, S. J. Biol. Chem., 1992, 267, 8620-8627.
26. Christiansen, K.; Westergaard, O. In DNA Repair Mechanisms, Alfred Benzon Symposium 35, Bohr, V. A.; Wassermann, K.; Kraemer, K. H., Eds.; Munksgaard, Copenhagen, 1992, pp 361-371.
27. Henningfeld, K. A.; Hecht, S. M. Biochemistry, 1995, 34, 6120-6129.
28. Robins, M. J.; Hansske, F.; Low, N. H.; Park, J. A. Tetrahedron Lett., 1984, 25, 367-370.
29. Hansske, F.; Robins, M. J. Tetrahedron Lett., 1985, 26, 4295-4298.
30. Norbeck, D. W.; Kramer, J. B. J. Am. Chem. Soc., 1988, 108, 7217-7218.
31. Murray, D. H.; Prokop, J. J. Pharm. Sci., 1965, 54, 1468-1473.
32. Rizzo, C. J.; Dougherty, J. P.; Breslow, R. Tetrahedron Lett., 1992, 33, 4129-4132.
33. Robins, M. J.; Wilson, J. S. J. Am. Chem. Soc., 1981, 103, 932-933.
34. Lessor, R. A.; Leonard, L. J. J. Org. Chem., 1981, 46, 4300-4301.
35. Rasmussen, J. R.; Slinger, C. J.; Kordish, R. J.; Newman-Evans, D. D. J. Org. Chem., 1981, 46, 4843-4846.
36. Barton, D. H. R.; Subramanian, R. J. Chem. Soc., Perkin Trans, 1, 1977, 1718-1723.
37. Barton, D. H. R.; Motherwell, W. B. Pure Appl. Chem., 1981, 53, 15-31.
38. Wittenburg, E. Chem. Ber., 1968, 107, 1095-1114.
39. Vorbrüggen, H. Acta Biochim. Pol., 1996, 43, 25-36.
40. Johnson, T. B.; Hilbert, G. E. Science, 1929, 69, 579-580.
41. Hilbert, G. E.; Johnson, T. B. J. Am. Chem. Soc., 1930, 52, 4489-4494.
42. Hennen, W. J.; Wong, C.-H. J. Org. Chem., 1989, 54, 4692-4695.
43. Wilson, J. L.; Liotta, D. Tetrahedron Lett., 1990, 31, 1815-1818.
44. Neilson, T.; Werstiuk, E. S. Can. J. Chem., 1971, 49, 493-499.
45. Ranganathan, R. S.; Jones, G. H.; Moffatt, J. G. J. Org. Chem., 1974, 39, 290-298.
46. Lai, C. K.; Gut, M. J. Org. Chem., 1987, 52, 685-688.
47. Caruthers, M. H. Science, 1985, 230, 281-285.
48. Stevnsner, T.; Mortensen, U. H.; Westergaard, O.; Bonven, B. J. J. Biol. Chem., 1989, 264, 10110-10113.
49. Edwards, K. A.; Halligan, B. D.; Davis, J. L.; Nivera, N. L.; Liu, L. I. Nucleic Acids Res., 1982, 10, 2565-2575.
50. Shuman, S.; Turner, J. J. Biol. Chem., 1993, 265, 18943-18950.
51. Sekiguchi, J.; Shuman, S. J. Biol. Chem., 1994, 269, 31731-31734.
52. Sekiguchi, J.; Shuman, S. EMBO J., 1996, 15, 3448-3457.
53. Pourquier, P.; Ueng, L.-M.; Kohlhagen, G.; Mazumder, A.; Gupta, M.; Kohn, K. W.; Pommier, Y. J. Biol. Chem., 1997, 272, 7792-7796.
54. Been, M. D.; Champoux, J. J. J. Mol. Biol., 1984, 180, 515-531.
55. Sambrook, J.; Fritsh, E.; Maniatis, T. In Molecuar Cloning: A Laboratory Manual, 2nd Ed.; Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989, pp 11.31-11.32.